mRNA_A-nodosum_M_contig994.3.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig994.3.2
Unique NamemRNA_A-nodosum_M_contig994.3.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig994.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig994contigA-nodosum_M_contig994:50504..52788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1983
Hectar predicted targeting categoryother localisation
Exons2
Cds size1524
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870535.1496856-UTR-A-nodosum_M_contig994:50503..508821680870535.1496856-UTR-A-nodosum_M_contig994:50503..50882Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig994 50504..50882 -
1680870535.1628637-UTR-A-nodosum_M_contig994:51184..511881680870535.1628637-UTR-A-nodosum_M_contig994:51184..51188Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig994 51185..51188 -
1680870535.3231087-UTR-A-nodosum_M_contig994:52712..527881680870535.3231087-UTR-A-nodosum_M_contig994:52712..52788Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig994 52713..52788 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870535.1772985-CDS-A-nodosum_M_contig994:51188..527121680870535.1772985-CDS-A-nodosum_M_contig994:51188..52712Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig994 51189..52712 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig994.3.2prot_A-nodosum_M_contig994.3.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig994 51189..52712 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig994.3.2

>prot_A-nodosum_M_contig994.3.2 ID=prot_A-nodosum_M_contig994.3.2|Name=mRNA_A-nodosum_M_contig994.3.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=508bp
MMNVSSRKCRTESCSKRSSFGLAGTKTASYCAQHAPAGMVNVRGRKCRTE
GCEKRSSFGLAGTKTVEYCAQHAPAGMVNISSKKCKAEGCGKQPAFGVLG
TKTAEYCVHHAPAGMVKVWARKSRIKGSGNPPAFGEAGTKAAEDCAHHAP
AGMINVFNRKCRTEGCGKRSSFGVAGTKTAEYCAQHAPDRMINVSYLKCR
TEGCDMFSSFGVASTKTPEYCVQHAPDEMVDVLGRKCRTESFGKQPTFGL
AGTKSPKYCAQHASDLMANVSSKNSRKCRTEGCGKKPAFGVVGTKTVEYC
AHHALAGMVKISDKMYRTEGCDKCPLFGEAGTKTLEYCMQHAPDGMANVW
SRKCKTEGSDKCSSFGLAGTKTADYCAQHAAAGMVNVRRSGKVSGGDYSR
SSCDIEVYRRRETCPHYIAEGTIVNASPSGVKRKTVYPSDIASTPPDGSG
DSPKRARWLDMTSAASSRAVAGESAAESVTMAAVDRQQLHSPVKRDSCVK
AEVQLSL*
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mRNA from alignment at A-nodosum_M_contig994:50504..52788-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig994.3.2 ID=mRNA_A-nodosum_M_contig994.3.2|Name=mRNA_A-nodosum_M_contig994.3.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2285bp|location=Sequence derived from alignment at A-nodosum_M_contig994:50504..52788- (Ascophyllum nodosum dioecious)
CTGTGGCAAGTGTCCGTCATTCGGAGAGGCTGGTGCGAAAACGGCGGAGT
ACTGCGTACAACACGCCCCGGACGGGATGATGAACGTTTCCAGCAGAAAG
TGCAGAACCGAAAGCTGCAGCAAGCGTTCATCTTTCGGATTGGCCGGTAC
AAAAACAGCGAGCTACTGCGCACAACACGCCCCGGCTGGGATGGTCAACG
TCAGGGGAAGAAAGTGCAGAACCGAAGGATGCGAGAAGCGTTCGTCATTC
GGACTGGCCGGTACGAAAACGGTGGAGTACTGCGCACAACACGCCCCGGC
CGGAATGGTCAACATTTCCAGCAAGAAGTGCAAAGCAGAAGGCTGCGGCA
AGCAGCCGGCGTTCGGAGTGTTGGGGACGAAAACGGCGGAGTACTGTGTG
CATCATGCCCCGGCCGGGATGGTCAAGGTCTGGGCCAGAAAGTCCAGAAT
CAAAGGCAGCGGCAATCCGCCGGCGTTCGGGGAGGCTGGTACGAAAGCGG
CGGAGGATTGCGCACATCACGCCCCGGCCGGGATGATCAACGTCTTCAAC
AGAAAGTGCAGAACCGAAGGCTGCGGCAAGCGTTCGTCGTTCGGAGTGGC
TGGTACGAAAACGGCGGAGTACTGCGCACAACACGCCCCGGACAGGATGA
TCAACGTTTCCTATCTAAAGTGCAGAACCGAAGGCTGCGACATGTTTTCG
TCGTTTGGAGTTGCAAGTACAAAAACGCCGGAGTACTGTGTACAACACGC
GCCGGACGAGATGGTTGACGTATTGGGCAGAAAGTGCAGAACCGAAAGCT
TCGGCAAGCAGCCGACTTTCGGATTGGCTGGTACGAAATCGCCGAAGTAT
TGCGCACAACACGCCTCGGACTTGATGGCCAACGTTTCCAGCAAAAACAG
CAGAAAGTGCAGAACAGAGGGCTGCGGGAAGAAGCCGGCGTTCGGAGTGG
TCGGGACAAAAACGGTGGAGTACTGCGCTCATCACGCCCTGGCCGGGATG
GTCAAGATCTCGGACAAAATGTACAGAACCGAAGGCTGCGACAAATGTCC
GTTATTCGGCGAGGCAGGTACGAAAACGCTGGAGTACTGCATGCAACACG
CGCCGGACGGGATGGCCAACGTCTGGAGCAGAAAGTGCAAAACCGAAGGC
AGCGACAAGTGTTCGTCTTTCGGATTGGCCGGTACAAAAACAGCGGACTA
CTGCGCACAACACGCCGCGGCCGGGATGGTTAACGTCCGCAGGAGTGGTA
AGGTTTCCGGTGGGGACTACAGCAGGTCAAGTTGCGATATTGAAGTGTAC
AGGAGGCGAGAGACTTGCCCACATTACATCGCAGAGGGAACCATTGTTAA
CGCAAGTCCCAGTGGCGTAAAACGGAAAACCGTTTATCCTTCTGACATTG
CAAGCACCCCTCCGGACGGTAGTGGGGATTCTCCTAAGCGAGCTAGGTGG
CTAGACATGACCTCCGCGGCTTCTTCGCGAGCTGTAGCTGGAGAATCAGC
TGCAGAGTCGGTGACTATGGCGGCGGTCGACAGGCAACAACTACACTCTC
CTGTCAAGCGAGATTCGTGTGTTAAGGCTGAGGTACAGCTCTCCTTATAG
TCAGGTATATCACGCAGGGTATCAAGCCCATCTGGTTAAGTAACAGTTGG
TTACAGTACTATTCCAGTGACCGAATCTCCGTCGTAGGTACACACTCGTA
CATTTGTTCAGAAGAAGTGATACTGTATCCCGCGTTTTGTCCGTGGTCTA
CGAAACATTCCCTGTCGCGAGGCGGCGCTCCAGCTCAGCTTTTGCATTTT
CCCTAAGATCCTCGTGACGTCAAAGTGCAGTAATTCTCAACCGAACATGC
TACTCATACTTACTCCTACAACCTTGCACTGTCGTCCCCCCGTCTTTCTA
ACTCAGATATACTGTCTACGTCGAGCACGAACGTGATGGTCAGTCAGGCA
AGAGCAAGGCGTCGGATTAAAAAACACCCCGGAGTCTGTGCGATCCTCGA
GAGCGTTTCTCCGAGGTTAGCTCTAGTGTTTGCTAGTCGTATCACCAGAG
TGTCAGAGTCAGTTACGGAAGCGCCCTTCTACAGTAACCCTTGCCGTGGA
CAGCAGGTGGTGATGTGTGCTTTATTGTGTATTGTACACAAAGTATGCAG
CACAACCCGGGCATGGAAGTCTCTCTCCCACCTTTTCTCAGGAAATGGGC
AGTAACGACACCTTAAGCTAGTTTTTTTTGTGAAGATTGAGTGAAGTATT
GTTGAATTTTCGGGTCTACTTGACAGAGAAAATAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig994:50504..52788-

>mRNA_A-nodosum_M_contig994.3.2 ID=mRNA_A-nodosum_M_contig994.3.2|Name=mRNA_A-nodosum_M_contig994.3.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at A-nodosum_M_contig994:50504..52788- (Ascophyllum nodosum dioecious)
ATGATGAACGTTTCCAGCAGAAAGTGCAGAACCGAAAGCTGCAGCAAGCG
TTCATCTTTCGGATTGGCCGGTACAAAAACAGCGAGCTACTGCGCACAAC
ACGCCCCGGCTGGGATGGTCAACGTCAGGGGAAGAAAGTGCAGAACCGAA
GGATGCGAGAAGCGTTCGTCATTCGGACTGGCCGGTACGAAAACGGTGGA
GTACTGCGCACAACACGCCCCGGCCGGAATGGTCAACATTTCCAGCAAGA
AGTGCAAAGCAGAAGGCTGCGGCAAGCAGCCGGCGTTCGGAGTGTTGGGG
ACGAAAACGGCGGAGTACTGTGTGCATCATGCCCCGGCCGGGATGGTCAA
GGTCTGGGCCAGAAAGTCCAGAATCAAAGGCAGCGGCAATCCGCCGGCGT
TCGGGGAGGCTGGTACGAAAGCGGCGGAGGATTGCGCACATCACGCCCCG
GCCGGGATGATCAACGTCTTCAACAGAAAGTGCAGAACCGAAGGCTGCGG
CAAGCGTTCGTCGTTCGGAGTGGCTGGTACGAAAACGGCGGAGTACTGCG
CACAACACGCCCCGGACAGGATGATCAACGTTTCCTATCTAAAGTGCAGA
ACCGAAGGCTGCGACATGTTTTCGTCGTTTGGAGTTGCAAGTACAAAAAC
GCCGGAGTACTGTGTACAACACGCGCCGGACGAGATGGTTGACGTATTGG
GCAGAAAGTGCAGAACCGAAAGCTTCGGCAAGCAGCCGACTTTCGGATTG
GCTGGTACGAAATCGCCGAAGTATTGCGCACAACACGCCTCGGACTTGAT
GGCCAACGTTTCCAGCAAAAACAGCAGAAAGTGCAGAACAGAGGGCTGCG
GGAAGAAGCCGGCGTTCGGAGTGGTCGGGACAAAAACGGTGGAGTACTGC
GCTCATCACGCCCTGGCCGGGATGGTCAAGATCTCGGACAAAATGTACAG
AACCGAAGGCTGCGACAAATGTCCGTTATTCGGCGAGGCAGGTACGAAAA
CGCTGGAGTACTGCATGCAACACGCGCCGGACGGGATGGCCAACGTCTGG
AGCAGAAAGTGCAAAACCGAAGGCAGCGACAAGTGTTCGTCTTTCGGATT
GGCCGGTACAAAAACAGCGGACTACTGCGCACAACACGCCGCGGCCGGGA
TGGTTAACGTCCGCAGGAGTGGTAAGGTTTCCGGTGGGGACTACAGCAGG
TCAAGTTGCGATATTGAAGTGTACAGGAGGCGAGAGACTTGCCCACATTA
CATCGCAGAGGGAACCATTGTTAACGCAAGTCCCAGTGGCGTAAAACGGA
AAACCGTTTATCCTTCTGACATTGCAAGCACCCCTCCGGACGGTAGTGGG
GATTCTCCTAAGCGAGCTAGGTGGCTAGACATGACCTCCGCGGCTTCTTC
GCGAGCTGTAGCTGGAGAATCAGCTGCAGAGTCGGTGACTATGGCGGCGG
TCGACAGGCAACAACTACACTCTCCTGTCAAGCGAGATTCGTGTGTTAAG
GCTGAGGTACAGCTCTCCTTATAG
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