mRNA_A-nodosum_M_contig9934.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9934.1.1
Unique NamemRNA_A-nodosum_M_contig9934.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9934.1.1 vs. uniprot
Match: A0A6H5KCV4_9PHAE (Exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV4_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 3.540e-52
Identity = 90/112 (80.36%), Postives = 101/112 (90.18%), Query Frame = 1
Query:    1 ILGLDCEMVYTKAGLELARATFVNVKGEIVYDELVKPTGMMTDFNTQFSGITYEMLKGVTRTLRDAQAEILEFVGAETYLVGHSLESDLRALKIVHRRLIDTSELYPSTRAV 336
            +LGLDCEMVYT  GLELARAT VNVKG++VYD+LVKPT  +TD+NTQFSGIT EMLKGVTRTLRDAQ EIL FV AETYLVGHSL+SDLRAL++VHRRLIDTSELYP+ R +
Sbjct:  487 MLGLDCEMVYTSEGLELARATLVNVKGQMVYDKLVKPTLKVTDYNTQFSGITPEMLKGVTRTLRDAQREILSFVDAETYLVGHSLDSDLRALRLVHRRLIDTSELYPNPRGI 598          
BLAST of mRNA_A-nodosum_M_contig9934.1.1 vs. uniprot
Match: D7FQ11_ECTSI (Exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ11_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 1.040e-50
Identity = 91/123 (73.98%), Postives = 105/123 (85.37%), Query Frame = 1
Query:    1 ILGLDCEMVYTKAGLELARATFVNVKGEIVYDELVKPTGMMTDFNTQFSGITYEMLKGVTRTLRDAQAEILEFVGAETYLVGHSLESDLRALKIVHRRLIDTSELYPSTRAVILWSAQRDLTQ 369
            +LGLDCEM+YT  GLELARAT VNVKG+ VYD+LVKPT  +TD+NTQFSGIT EMLKGVTRTLRDAQ EIL FV AETYLVGHSL+SDLRAL++VHRRLIDTSELYP+ R +   +  R L++
Sbjct:  549 MLGLDCEMIYTSEGLELARATLVNVKGQTVYDKLVKPTLKVTDYNTQFSGITPEMLKGVTRTLRDAQREILSFVDAETYLVGHSLDSDLRALRLVHRRLIDTSELYPNLRGIPFKNGLRVLSK 671          
BLAST of mRNA_A-nodosum_M_contig9934.1.1 vs. uniprot
Match: A0A7S3XWP5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWP5_HETAK)

HSP 1 Score: 133 bits (335), Expect = 1.910e-37
Identity = 62/114 (54.39%), Postives = 89/114 (78.07%), Query Frame = 1
Query:   28 YTKAGLELARATFVNVKGEIVYDELVKPTGMMTDFNTQFSGITYEMLKGVTRTLRDAQAEILEFVGAETYLVGHSLESDLRALKIVHRRLIDTSELYPSTRAVILWSAQRDLTQ 369
            YT+AGLEL R T VN K E +YD +VKP   +TDFNTQ+SGIT + ++G T  L++AQA+++EF+G ETY+ GHS++SDLRALK++H R+IDT+ LYPS R +   ++ ++LT+
Sbjct:    1 YTEAGLELTRVTLVNHKSETLYDTIVKPARPITDFNTQYSGITEKDMQGPTVNLQEAQAKLMEFIGPETYVAGHSIDSDLRALKLIHHRIIDTAVLYPSPRGLPFKNSLKNLTK 114          
BLAST of mRNA_A-nodosum_M_contig9934.1.1 vs. uniprot
Match: A0A444Z2Y9_ARAHY (Exonuclease domain-containing protein n=8 Tax=Arachis TaxID=3817 RepID=A0A444Z2Y9_ARAHY)

HSP 1 Score: 139 bits (349), Expect = 5.220e-36
Identity = 71/123 (57.72%), Postives = 86/123 (69.92%), Query Frame = 1
Query:    1 ILGLDCEMVYTKAGLELARATFVNVKGEIVYDELVKPTGMMTDFNTQFSGITYEMLKGVTRTLRDAQAEILEFVGAETYLVGHSLESDLRALKIVHRRLIDTSELYPSTRAVILWSAQRDLTQ 369
            IL LDCEM  T  G EL R T VN+ G++V D+LVKP+  + D+NT+FSGITYEML GVT TLRD Q E LE V  ET+LVGHSLE+DL ALKI H  +IDT+ LY + R     +A R L +
Sbjct:  219 ILALDCEMCITTEGFELTRVTLVNINGQVVIDKLVKPSNDIVDYNTRFSGITYEMLDGVTTTLRDIQKEFLELVYKETFLVGHSLENDLLALKISHDLIIDTAVLYKNPRGASYKTALRHLAK 341          
BLAST of mRNA_A-nodosum_M_contig9934.1.1 vs. uniprot
Match: A0A836CFL3_9STRA (Exonuclease domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFL3_9STRA)

HSP 1 Score: 135 bits (340), Expect = 8.020e-35
Identity = 63/112 (56.25%), Postives = 87/112 (77.68%), Query Frame = 1
Query:    1 ILGLDCEMVYTKAGLELARATFVNVKGEIVYDELVKPTGMMTDFNTQFSGITYEMLKGVTRTLRDAQAEILEFVGAETYLVGHSLESDLRALKIVHRRLIDTSELYPSTRAV 336
            +LG+DCEMV TK GLELAR + VN +GE VYD  V+P+  +T+ +T++SGIT   L+GVT TL+D QA++L  + + TYLVGHSL+ DLRAL++VH R+IDT+ LYPS + +
Sbjct:   98 LLGIDCEMVETKKGLELARVSLVNARGEAVYDRHVRPSAPVTNHHTEYSGITAAHLEGVTATLKDVQADLLPLLDSHTYLVGHSLDGDLRALRLVHPRIIDTAVLYPSPKGM 209          
BLAST of mRNA_A-nodosum_M_contig9934.1.1 vs. uniprot
Match: UPI000CD9378F (small RNA degrading nuclease 5 isoform X4 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD9378F)

HSP 1 Score: 133 bits (335), Expect = 1.230e-34
Identity = 67/123 (54.47%), Postives = 86/123 (69.92%), Query Frame = 1
Query:    1 ILGLDCEMVYTKAGLELARATFVNVKGEIVYDELVKPTGMMTDFNTQFSGITYEMLKGVTRTLRDAQAEILEFVGAETYLVGHSLESDLRALKIVHRRLIDTSELYPSTRAVILWSAQRDLTQ 369
            I+G+DCEM  T  G EL R T ++ KG+++ D+LVKPT  +TD+NT++SGIT EML GVT TL+D Q E L+ V  ET LVGHSLE+DL ALKI H  +IDT+ LY  +R      A R LT+
Sbjct:  211 IVGVDCEMCITNEGFELTRVTLIDFKGQVLLDKLVKPTNAITDYNTRYSGITSEMLNGVTTTLKDIQEEFLQIVNRETILVGHSLENDLLALKICHNLVIDTAVLYKHSRGGTYKIALRVLTR 333          
BLAST of mRNA_A-nodosum_M_contig9934.1.1 vs. uniprot
Match: A0A7S1SV13_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SV13_9CHLO)

HSP 1 Score: 125 bits (315), Expect = 1.450e-34
Identity = 63/122 (51.64%), Postives = 85/122 (69.67%), Query Frame = 1
Query:    1 ILGLDCEMVYTKAGLELARATFVNVKGEIVYDELVKPTGMMTDFNTQFSGITYEMLKGVTRTLRDAQAEILEFVGAETYLVGHSLESDLRALKIVHRRLIDTSELYPSTRAVILWSAQRDLT 366
            ++GLDCEM  T AGLEL R T VN    +V DELVKP+  + D+NT+FSGIT +ML GVT +L DA+A++++ V   T LVGH L++DLRAL+++H   +DTS LYP  +     SA R L+
Sbjct:    8 LMGLDCEMCITAAGLELTRVTLVNEHDTVVVDELVKPSNPILDYNTRFSGITEDMLSGVTTSLEDARAKVIKVVKDTTMLVGHGLDNDLRALRLLHANCLDTSILYPHPKGPPARSALRYLS 129          
BLAST of mRNA_A-nodosum_M_contig9934.1.1 vs. uniprot
Match: A0A1Y1IAJ6_KLENI (Exonuclease family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IAJ6_KLENI)

HSP 1 Score: 135 bits (339), Expect = 2.890e-34
Identity = 65/110 (59.09%), Postives = 86/110 (78.18%), Query Frame = 1
Query:    1 ILGLDCEMVYTKAGLELARATFVNVKGEIVYDELVKPTGMMTDFNTQFSGITYEMLKGVTRTLRDAQAEILEFVGAETYLVGHSLESDLRALKIVHRRLIDTSELYPSTR 330
            ++ +DCEM YT+AGLEL R T V+ KG+++ D+LVKPT  + D+NT+FSGIT EML+ VT TL+D QAE+LE V AET LVGHSL+SDL+ALK++H   IDT+  +P  R
Sbjct:  391 MVAVDCEMCYTEAGLELTRVTLVSGKGKVLLDKLVKPTNPIRDYNTKFSGITAEMLQDVTTTLQDIQAELLELVSAETILVGHSLQSDLQALKLIHGNNIDTALAFPHPR 500          
BLAST of mRNA_A-nodosum_M_contig9934.1.1 vs. uniprot
Match: A0A200QJK9_9MAGN (Exonuclease n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QJK9_9MAGN)

HSP 1 Score: 134 bits (336), Expect = 3.620e-34
Identity = 69/123 (56.10%), Postives = 89/123 (72.36%), Query Frame = 1
Query:    1 ILGLDCEMVYTKAGLELARATFVNVKGEIVYDELVKPTGMMTDFNTQFSGITYEMLKGVTRTLRDAQAEILEFVGAETYLVGHSLESDLRALKIVHRRLIDTSELYPSTRAVILWSAQRDLTQ 369
            IL LDCEM  T  G EL RAT V+++G+++ D+LVKP+  + D+NT+FSGIT EMLKGVT TL+D QAE L+ V  ET LVGHSLE+DL ALKI H+ +IDT+ LY + R     S+ R L +
Sbjct:  221 ILALDCEMCITADGFELTRATLVDIEGQVLLDKLVKPSNAILDYNTRFSGITCEMLKGVTTTLKDIQAEFLKLVYKETVLVGHSLENDLLALKISHKLVIDTAILYQNPRGAHYKSSLRVLAR 343          
BLAST of mRNA_A-nodosum_M_contig9934.1.1 vs. uniprot
Match: A0A251MR96_PRUPE (Exonuclease domain-containing protein n=7 Tax=Prunus TaxID=3754 RepID=A0A251MR96_PRUPE)

HSP 1 Score: 133 bits (335), Expect = 4.450e-34
Identity = 70/123 (56.91%), Postives = 86/123 (69.92%), Query Frame = 1
Query:    1 ILGLDCEMVYTKAGLELARATFVNVKGEIVYDELVKPTGMMTDFNTQFSGITYEMLKGVTRTLRDAQAEILEFVGAETYLVGHSLESDLRALKIVHRRLIDTSELYPSTRAVILWSAQRDLTQ 369
            +L LDCEM  T  GLEL RAT V +KG++V D+LVKPT  + D+NT+FSGIT EML GVT +L+D Q E L+ V  ET LVGHSLE+DL ALKI H  +IDT+ LY  +R     S  RDL +
Sbjct:  214 MLALDCEMCVTSEGLELTRATLVTIKGKVVLDKLVKPTNTIVDYNTRFSGITSEMLDGVTTSLKDIQDEFLKLVYKETILVGHSLENDLLALKISHNLVIDTAVLYRYSRGGSYKSKLRDLAR 336          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9934.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCV4_9PHAE3.540e-5280.36Exonuclease domain-containing protein n=1 Tax=Ecto... [more]
D7FQ11_ECTSI1.040e-5073.98Exonuclease domain-containing protein n=1 Tax=Ecto... [more]
A0A7S3XWP5_HETAK1.910e-3754.39Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A444Z2Y9_ARAHY5.220e-3657.72Exonuclease domain-containing protein n=8 Tax=Arac... [more]
A0A836CFL3_9STRA8.020e-3556.25Exonuclease domain-containing protein n=1 Tax=Trib... [more]
UPI000CD9378F1.230e-3454.47small RNA degrading nuclease 5 isoform X4 n=1 Tax=... [more]
A0A7S1SV13_9CHLO1.450e-3451.64Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A1Y1IAJ6_KLENI2.890e-3459.09Exonuclease family protein n=1 Tax=Klebsormidium n... [more]
A0A200QJK9_9MAGN3.620e-3456.10Exonuclease n=1 Tax=Macleaya cordata TaxID=56857 R... [more]
A0A251MR96_PRUPE4.450e-3456.91Exonuclease domain-containing protein n=7 Tax=Prun... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9934contigA-nodosum_M_contig9934:6833..7219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQ11
PFAMsRNase_T,SAP
Model size387
Max annot lvl2759|Eukaryota
KEGG rclassRC01469
KEGG koko:K06118,ko:K14570
KEGG ReactionR05775
KEGG Pathwayko00520,ko00561,ko03008,map00520,map00561,map03008
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.37e-46
EggNOG OGsCOG0847@1|root,KOG2248@2759|Eukaryota
EC3.13.1.1
Descriptionexonuclease activity
Cds size366
COG categoryL
BRITEko00000,ko00001,ko01000,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870534.8379943-UTR-A-nodosum_M_contig9934:6832..68531680870534.8379943-UTR-A-nodosum_M_contig9934:6832..6853Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9934 6833..6853 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870534.8560529-CDS-A-nodosum_M_contig9934:6853..72191680870534.8560529-CDS-A-nodosum_M_contig9934:6853..7219Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9934 6854..7219 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9934.1.1prot_A-nodosum_M_contig9934.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9934 6854..7219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9934.1.1

>prot_A-nodosum_M_contig9934.1.1 ID=prot_A-nodosum_M_contig9934.1.1|Name=mRNA_A-nodosum_M_contig9934.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=122bp
MVYTKAGLELARATFVNVKGEIVYDELVKPTGMMTDFNTQFSGITYEMLK
GVTRTLRDAQAEILEFVGAETYLVGHSLESDLRALKIVHRRLIDTSELYP
STRAVILWSAQRDLTQVASIP*
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mRNA from alignment at A-nodosum_M_contig9934:6833..7219+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9934.1.1 ID=mRNA_A-nodosum_M_contig9934.1.1|Name=mRNA_A-nodosum_M_contig9934.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=387bp|location=Sequence derived from alignment at A-nodosum_M_contig9934:6833..7219+ (Ascophyllum nodosum dioecious)
ATCTTGGGACTAGACTGCGAGATGGTGTACACAAAAGCAGGACTGGAACT AGCACGCGCGACGTTCGTGAACGTGAAAGGGGAGATTGTGTACGACGAGC TCGTCAAGCCCACGGGGATGATGACAGATTTCAACACTCAGTTCAGCGGC ATTACTTACGAGATGCTCAAGGGGGTCACACGTACTCTCAGGGACGCGCA GGCTGAGATTCTGGAGTTCGTCGGCGCCGAGACGTACCTGGTGGGTCACA GCTTGGAGAGCGATCTGCGGGCGTTGAAGATAGTGCACCGCAGACTGATC GACACGTCCGAACTCTACCCTAGCACGAGGGCCGTGATATTATGGTCGGC GCAGAGGGATTTGACGCAAGTGGCATCGATCCCGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9934:6833..7219+

>mRNA_A-nodosum_M_contig9934.1.1 ID=mRNA_A-nodosum_M_contig9934.1.1|Name=mRNA_A-nodosum_M_contig9934.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at A-nodosum_M_contig9934:6833..7219+ (Ascophyllum nodosum dioecious)
ATGGTGTACACAAAAGCAGGACTGGAACTAGCACGCGCGACGTTCGTGAA
CGTGAAAGGGGAGATTGTGTACGACGAGCTCGTCAAGCCCACGGGGATGA
TGACAGATTTCAACACTCAGTTCAGCGGCATTACTTACGAGATGCTCAAG
GGGGTCACACGTACTCTCAGGGACGCGCAGGCTGAGATTCTGGAGTTCGT
CGGCGCCGAGACGTACCTGGTGGGTCACAGCTTGGAGAGCGATCTGCGGG
CGTTGAAGATAGTGCACCGCAGACTGATCGACACGTCCGAACTCTACCCT
AGCACGAGGGCCGTGATATTATGGTCGGCGCAGAGGGATTTGACGCAAGT
GGCATCGATCCCGTGA
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