mRNA_A-nodosum_M_contig992.18.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig992.18.1
Unique NamemRNA_A-nodosum_M_contig992.18.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig992.18.1 vs. uniprot
Match: A0A6H5JJG5_9PHAE (DMT protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJG5_9PHAE)

HSP 1 Score: 476 bits (1226), Expect = 5.930e-160
Identity = 249/355 (70.14%), Postives = 289/355 (81.41%), Query Frame = 2
Query:  368 RSDRRGFILLATVPLVWGTYGPSVKYLYQMGDSTPGLFFNLSCYLVSAAFLTAIAWVNDARRHREV----------RSDPSEAKSVPPQDASLANSYAARAGLELGAWLFLGGTVQVWGLELTSASRAAFLVQLTTVIVPVLEAVLGRRKLKTQVWLACALAMVGVALVSLGGILPPGINAMEYIAGSLSAARFSPSGLLETITSKNIRGDLLIALSALFYSLHVVRLGAYVSKVETLSLARAKAIAEVGFSFLSVVVAGFVGGQWDNISRYVAALASKPELLLVFCAVVVWNGALTSAYAMWAQTRGQAVVAPSEANLVYSLQPLFSTFFAVLILKESFRGVEMAGAGIVLASL 1402
            RS+R G ++LATVPLVWGTY PSVKYLYQMG+S PGL FN +CY+VS     A+A +N ARRHR            R    E   +PP++ +L N YAARAG ELG WLFL GTV  WGLELTSASRA FLVQLTTVIVPVLEA +GRRKLK QVWLACALA VGVALVSLGGILPPG +  +YI+GSLSA R +PSGL E++TS N+RGDLL+A SALFYSLHVVRLG +VSK++TLSLARAKA++E+  S LS+VVAGF+GGQ DN +R++ ALASKP+LLLVF AVV+WNGALT+AYAMWAQTRGQA VAPSEANLVYSLQPL+S  FA ++LKESFRGVE AGAG++L SL
Sbjct:  104 RSERSGLLVLATVPLVWGTYAPSVKYLYQMGESPPGLLFNFACYVVSVLTFAAVASLNTARRHRTATAGECGRWGKRRGVEEEAELPPKEKALRNRYAARAGAELGLWLFLAGTV--WGLELTSASRAGFLVQLTTVIVPVLEAFVGRRKLKPQVWLACALATVGVALVSLGGILPPGADLFKYISGSLSATRLAPSGLWESVTSGNLRGDLLVACSALFYSLHVVRLGVHVSKLDTLSLARAKALSELALSALSLVVAGFLGGQADNFARFLGALASKPDLLLVFSAVVIWNGALTTAYAMWAQTRGQASVAPSEANLVYSLQPLWSVLFAAMLLKESFRGVEAAGAGLLLLSL 456          
BLAST of mRNA_A-nodosum_M_contig992.18.1 vs. uniprot
Match: K0RU20_THAOC (EamA domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RU20_THAOC)

HSP 1 Score: 203 bits (516), Expect = 5.860e-55
Identity = 130/365 (35.62%), Postives = 194/365 (53.15%), Query Frame = 2
Query:  383 GFILLATVPLVWGTYGPSVKYLYQMGDSTPGLFFNLSCYLVSAAFLTAIAWVNDARRHREVRSDPSEAKSVPPQDASLANSYAARAGLELGAWLFLGGTVQVWGLELTSASRAAFLVQLTTVIVPVLEA--VLGRRKLKTQVWLACALAMVGVALVSLGGILPPGINAMEYIAGSLSAARFSPSGLLETITSKNIRGDLLIALSALFYSLHVVRLGAYVSKVETLSLARAKAIAEVGFSFLSVVVAGFVGGQWDNISRYV---------------AALASKPELLLVFCAVVVWNGALTSAYAMWAQTRGQAVVAPSEANLVYSLQPLFSTFFAVLILKESFRGVEMAGAGIVLASLLLATYRSD 1426
            G ++L TVPL WGTY P+VKY+Y+M  + PG  F+   YLV+A  L  ++ +  A    E++ D +E                 R G ELG++LF+G  +QV GL+   A RAAFLVQLTTV+VP++ A  V     +  Q WLAC +A VGV+++   GI   G+ A       ++    SP             GDLLI L+A  Y+LHVVRLG Y  + + L+LA AKA  E   S   V++   +G     + +++                A +  P LL +    ++W G +T AY ++AQ+ GQ+ V+P+E+NL+Y+ QPLFS+ FA  +L E+       GA ++  +L L +  S+
Sbjct:  122 GILVLLTVPLAWGTYTPAVKYMYEMEPAIPGFVFSAGYYLVAAVTLRLLSSLQ-ANESNELKVDRAEESE---------EGLDIRGGWELGSYLFVGNALQVVGLQTVPADRAAFLVQLTTVLVPLVAALSVGALSAVPAQTWLACVVAFVGVSVM---GIDDGGVGAGISGGNPITLLHVSP-------------GDLLIVLAAFSYTLHVVRLGVYAPRTKPLALASAKATTEAFLSVAVVIILTIIGNNALEVPQFMQETGQGVINYFDALKTAASDNPRLLEISACAILWTGWVTCAYTIYAQSYGQSKVSPTESNLIYTTQPLFSSLFAYFLLGETLGAAGYVGATLICLALWLVSSPSN 460          
BLAST of mRNA_A-nodosum_M_contig992.18.1 vs. uniprot
Match: A0A8J2ST49_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2ST49_9STRA)

HSP 1 Score: 187 bits (474), Expect = 2.770e-50
Identity = 133/338 (39.35%), Postives = 178/338 (52.66%), Query Frame = 2
Query:  392 LLATVPLVWGTYGPSVKYLYQMGDSTPGLFFNLSCYLVSAAFLTAIAWVNDARRHREVRSDPSEAKSVPPQDASLANSYAARAGLELGAWLFLGGTVQVWGLELTSASRAAFLVQLTTVIVPVLEAVLGRRKLKTQVWLACALAMVGVALVSLGGILPPGINAMEYIAGSLSAARFSPSGLLETITSKNIRGDLLIALSALFYSLHVVRLGAYVSKVETLSLARAKAIAEVGFSFLSVVVAGFVGGQWDNISRYVAALA-SKPELLLVFCAVVVWNGALTSAYAMWAQTRGQAVVAPSEANLVYSLQPLFSTFFAVLILKESFRGVEMAGAGIVLASL 1402
            +L +VP+ WGTY P+VK +Y +    PG+ F+L+ Y+V+ A L A+A    A R  +                   N    RAG ELG +LFLG   QV GLE  SA  AAFLVQ TTVIVPVLEA +  + +    +  CA+A +GVA++   G+            G+  AA                 GDLLI  +AL YS+HVVRL A    ++ L LARAKA AEVGF+ LSV          D    + A+LA + P+        VVW GA+T AY +WAQ+ GQ  V  + ANLVY+ QP+FS  FA  +L E      +AG G++L ++
Sbjct:   44 VLLSVPVAWGTYAPAVKAVYALPAPPPGVVFSLAYYVVALACLGAVA----APRRSQ-------------------NPLPYRAGGELGLYLFLGNLFQVVGLETVSADAAAFLVQTTTVIVPVLEARVTGKAVAGATYRNCAVAFLGVAVLCGEGLE----------TGAAPAA-----------------GDLLILCAALLYSVHVVRLSALAPGLDALDLARAKAAAEVGFAVLSVAALAAATPFLDG-RAFAASLAHAAPDTTAALATAVVWCGAVTCAYTIWAQSFGQRGVTAARANLVYTSQPVFSALFAFGLLHEVPTAATLAGGGLILIAV 330          
BLAST of mRNA_A-nodosum_M_contig992.18.1 vs. uniprot
Match: A0A7S4GI16_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GI16_9EUGL)

HSP 1 Score: 190 bits (483), Expect = 1.760e-48
Identity = 129/357 (36.13%), Postives = 191/357 (53.50%), Query Frame = 2
Query:  392 LLATVPLVWGTYGPSVKYLYQMGDSTPGLFFNLSCYLVSAAFLTAIAWVNDARRHREVRSDPSEAKSVPPQDASLANSYAARA---GLELGAWLFLGGTVQVWGLELTSASRAAFLVQLTTVIVPVLEAVLGRRKLKTQVWLACALAMVGVALVSLGGILPPGINAMEYIAGSLSAARFSPSGLLETITSKNIRGDLLIALSALFYSLHVVRLGAYVSKVETLSLARAKAIAEVGFSFL---SVVVAGFVGGQ-----WDNISRYVAALASKPELLLVFCAVVVWNGALTSAYAMWAQTRGQAVVAPSEANLVYSLQPLFSTFFAVLILKESFRGVEMAGAGIVLASLLLATYRSDG 1429
            +L +VPLVWGTY P+V+++Y +    PG+FF+   YLV+  FL+A+A          +R  P  A    P+DA+   +   R    G ELG +LFLG   QV GL+ T++ +AAF+ QLTT+ VPVLEA+L R  +   +W A  +A+ GV +V+  G        M  +A +  AA               + G LL+ L+ LFY+LH+VRLG +  K + + LA +KA  E+ FS      + V+G   G+        +   V +L     L L       W GA+T  Y +WAQ+ GQA + P EANL+YS QP++STFF  ++L E+     + G  ++ A++LLA     G
Sbjct:  379 VLFSVPLVWGTYAPAVRFIYTLPVKVPGIFFSSLYYLVATLFLSAVA--------AALRPGPGSA----PEDAAERQAAKRRTLLGGAELGGYLFLGSYAQVLGLQATTSGQAAFITQLTTISVPVLEALLNRTPVPRGLWAASFVALAGVLVVAADG--------MAAVAAADPAA--------------TLPGFLLLGLATLFYTLHIVRLGVWAPKCDAIPLALSKAAWELLFSVALMGGLAVSGTDSGREIVTFLQQLMDGVLSLVDLQNLGLA----AAWTGAVTFGYTLWAQSFGQAGIRPVEANLIYSTQPIWSTFFGAVLLGETLGPAGVVGFVLIGAAMLLAIQAEAG 697          
BLAST of mRNA_A-nodosum_M_contig992.18.1 vs. uniprot
Match: A0A7S2LKU0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LKU0_9STRA)

HSP 1 Score: 183 bits (464), Expect = 6.060e-48
Identity = 129/372 (34.68%), Postives = 185/372 (49.73%), Query Frame = 2
Query:  383 GFILLATVPLVWGTYGPSVKYLYQ-MGDSTPGLFFNLSCYLVSAAFLTAIAWVNDARRHREVRSDPSEAKSVPPQDASLANSYAARAGLELGAWLFLGGTVQVWGLELTSASRAAFLVQLTTVIVPVLEAVLGRR--KLKTQVWLACALAMVGVALVSLGGILPPGINAMEYIAGSLSAARFSPSGLLETITSKNIRGDLLIALSALFYSLHVVRLGAYVSKVETLSLARAKAIAEVGFSFLSVVVAGFVGGQ-------------------WDNISRYV--AALASKPELLLVFCAVVVWNGALTSAYAMWAQTRGQAVVAPSEANLVYSLQPLFSTFFAVLILKESFRGVEMAGAGIVLASLLLATYRSD 1426
            G ++L TVPL WGTY P VKY+Y+ M  S PG  F+   Y+V+A  L+ ++ +      +E+ + P++ +          N    R G ELG++LF+G  +QV GL+   A RAAFLVQLTTVIVP+L A        +  Q W AC +A  GV ++                 G+       P   LE   S+   GD LI L+A+ YS+HVVRLG Y  +   + LA +KA  E   S   V    FVGG                    ++ IS  V   ++ S    L V  A ++W G +T AY ++AQ+ GQ  V P+++NL+Y+ QPLFS+ FA  +L E        GA ++  +L L +   D
Sbjct:   73 GILVLLTVPLAWGTYTPVVKYMYEKMDPSMPGFVFSAGYYIVAAVSLSVLSQLQAKNDDQEIINTPNDLQIEEEN-----NKITTRGGWELGSYLFIGNGLQVVGLQTVPADRAAFLVQLTTVIVPLLSAFAAGNLSAIPLQTWAACIIAFSGVVIMG-----------AHDSGGAGDQTGLLPLNSLEFNVSQ---GDALILLAAIAYSMHVVRLGEYAPRTTAIKLAASKATTEAFLSIALVATLFFVGGSAQSPLPEFVNKIGHEVVEYYNAISSAVMNGSVLSSGSSLGVSAAAILWTGWITCAYTIFAQSFGQGRVNPTDSNLIYTTQPLFSSLFAYFLLGEVLGVYGYIGAILIGMALWLVSSSGD 425          
BLAST of mRNA_A-nodosum_M_contig992.18.1 vs. uniprot
Match: A0A7R9TUG6_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TUG6_9VIRI)

HSP 1 Score: 176 bits (447), Expect = 1.750e-46
Identity = 120/342 (35.09%), Postives = 171/342 (50.00%), Query Frame = 2
Query:  389 ILLATVPLVWGTYGPSVKYLYQM--GDSTPGLFFNLSCYLVSAAFLTAIAWVNDARRHREVRSDPSEAKSVPPQDASLANSYAARAGLELGAWLFLGGTVQVWGLELTSASRAAFLVQLTTVIVPVLEAVLGRRKLKTQVWLACALAMVGVALVSLGGILPPGINAMEYIAGSLSAARFSPSGLLETITSKNIRGDLLIALSALFYSLHVVRLGAYVSKVETLSLARAKAIAEVGFSFLSVVVAGFVGGQWDNISRYVAALASKPELLLVFCAVVVWNGALTSAYAMWAQTRGQAVVAPSEANLVYSLQPLFSTFFAVLILKESFRGVEMAGAGIVLASLLL 1408
            ++L +VPL WGT+      +  +      P          + AA L A+  V  AR    VR+      S+P   A L  ++  R G ELGAWLF+G ++Q++ L LT+ASR AFLVQ TTVIVP+LEA L RR +  + W ACA+A  G+AL+S GG             G   A+   P   L         GD L   SA F+++HVVRL  + +    L LA  KA  +   + L+VV+AG   G ++ +        + P  +   CA+V WNG + SAY +WAQ   Q  ++   ANL YS QPL +   A   L ES      AG  +++ + ++
Sbjct:    9 LVLTSVPLAWGTWAVVNVLMLNVFVAAGVPPXXXXAINAGIQAASLAALTAVCAARA---VRTAGGRGASLPAPSA-LPGAFTLRGGAELGAWLFMGSSLQLYALTLTTASRVAFLVQATTVIVPMLEAALCRRAVSGRTWFACAMATSGIALLSFGG-------------GGAPASALPPGHAL---------GDALALTSAAFFAMHVVRLQGFAAACVPLELAWVKAATQAALT-LAVVLAGVAFGIFEVVPTLDGLAVAGPHTIAAVCALVAWNGVVPSAYTVWAQGFAQRAISAPRANLFYSAQPLAAAALAAAFLGESLGAHGAAGGALIVGACVI 323          
BLAST of mRNA_A-nodosum_M_contig992.18.1 vs. uniprot
Match: A0A0G4H494_9ALVE (EamA domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H494_9ALVE)

HSP 1 Score: 178 bits (451), Expect = 8.030e-46
Identity = 130/364 (35.71%), Postives = 195/364 (53.57%), Query Frame = 2
Query:  389 ILLATVPLVWGTYGPSVKYLYQMGDSTPGLFFNLSCYLVSAAFLTAIAWVN-----DARRHREVRSD---PSEAKSVPPQDASLANSYAARAGLELGAWLFLGGTVQVWGLELTSASRAAFLVQLTTVIVPVLEAVLGRRKLKTQVWLACALAMVGVALVSLGGILPPGINAMEYIAGSLSAARFSPSGLLETITSKNI-RGDLLIALSALFYSLHVVRLGAYVSKVETLSLARAKAIAEVGFSFLSVVVAGFVGGQ-----------WDNISRYVAALASKPEL---LLVFCAVVVWNGALTSAYAMWAQTRGQAVVAPSEANLVYSLQPLFSTFFAVLILKESFRGVEMAGAGIVLASLLLA 1411
            +LL++V L+WGTY P +K LY +    P +  N S YL S   L A   +      D    +E  SD    ++ +    +D+  ++     AG ELG WL+LG   Q++GL+ T ASRAAF VQ TTV+VP+L +V G  +++  +W++ ALA  GV  V+L G             GS+S   F   G  ++++ +N+ +GDLL+ LSALFYS HVVRLG     +  L LA  K   ++  + L V    +  G+            D ++ +  ++     L     VF  V V+NG + S YA WAQ+ GQ  V+P+ ANL+YSLQP++++ FA L+LKE      + G   ++A+ LLA
Sbjct:   99 LLLSSVSLLWGTYTPIIKLLYNLPHPPPPMAVNFSAYLASIFLLLAARNLGSNGGADIETLQETSSDFHSSAKGREDEVEDSDESSVSLLPAGAELGLWLYLGSISQLFGLQNTPASRAAFEVQTTTVLVPLLASVTGGERVRGSLWVSVALAFAGV--VTLAG-------------GSVSL--FPSEG--QSLSLQNLFKGDLLVILSALFYSSHVVRLGRVAPFLPALPLATTKIGVQLVIAGLVVAWTAYSEGESGGSLPLTLFLQDFVNSFGDSVGGNSFLNSVFFVFLIVSVYNGGV-SGYAAWAQSAGQKKVSPTAANLLYSLQPVWASLFAALLLKEQIETRTLTGGACIIAACLLA 442          
BLAST of mRNA_A-nodosum_M_contig992.18.1 vs. uniprot
Match: A0A7S3AAI5_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3AAI5_9RHOD)

HSP 1 Score: 174 bits (440), Expect = 2.460e-45
Identity = 126/340 (37.06%), Postives = 187/340 (55.00%), Query Frame = 2
Query:  392 LLATVPLVWGTYGPSVKYLYQMGDSTPGLFFNLSCYLVSAAFLTAIAWVNDARRHREVRSDPSEAKSVPPQDASLANSYAARAGLELGAWLFLGGTVQVWGLELTSASRAAFLVQLTTVIVPVLEAVLGRRKLKTQVWLACALAMVGVALVSLGGILPPGINAMEYIAGSLSAARFSPSGLLETITSKNIRGDLLIALSALFYSLHVVRLGAYVSKV-ETLSLARAKAIAEVGFSFLSVVVAGFVGGQWDNISRYVAALASKPELLLVFCAVVVWNGALTSAYAMWAQTRGQAVVAPSEANLVYSLQPLFSTFFAVLILKESFRGVEM-AGAGIVLASLL 1405
            +LA+VP+ W TY  +V+ LY +    P    N+  YL S A       V  A          SE++S P  ++ ++  YA   G ELG +LFLG T+Q+  L+LT+AS+AAF+VQ T+V+VP +EA+LGR   K ++  +  LA +G+ L S+    P  + A++            PS L       N+ GD L   +A+FYSLHV+RLG+  SK+ +T  LARAK I ++    ++ V A       D I  Y+  +      L     ++VW GA+T+AY  WAQTRGQ  V PS A+++YS QP++S+  A ++L E     ++ AG  I+ ASLL
Sbjct:   41 ILASVPVAWSTYNVAVRLLYSIDHPPPAPLINVGNYLTSLATFQIALLVRFALSKFSGSWQASESESSPEYESMISYYYA---GFELGLYLFLGSTIQLEALKLTTASKAAFIVQTTSVLVPTIEAILGRFPFK-KILPSVVLASIGIILFSVDD--PKSLGALD------------PSQL-------NL-GDSLALFAAVFYSLHVIRLGSLSSKLRDTFRLARAKTICQL---CIASVYATLALTSTDGIGEYLDNVTFND--LQASALILVWLGAVTTAYPQWAQTRGQMSVPPSVASILYSTQPVWSSITAFVVLSEQLPLKDIIAGVAIISASLL 349          
BLAST of mRNA_A-nodosum_M_contig992.18.1 vs. uniprot
Match: A0A1Z5KLH4_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KLH4_FISSO)

HSP 1 Score: 174 bits (440), Expect = 1.740e-44
Identity = 121/372 (32.53%), Postives = 188/372 (50.54%), Query Frame = 2
Query:  383 GFILLATVPLVWGTYGPSVKYLYQMGDSTPGLFFNLSCYLVSAAFLTAIAWVNDARRHREVRSDPSEAKSVPPQDASLANSYAARAGLELGAWLFLGGTVQVWGLELTSASRAAFLVQLTTVIVPVLEAVLGRRKLKTQVWLACALAMVGVALVSLGGILPPGINAMEYIAGSLSAARFSPSGLLETITSKNIRGDLLIALSALFYSLHVVRLGAYVSKVETLSLARAKAIAEVGFSFLSVVVAGFV-----GGQWDNISRYVAALASKPELLLVF--------------------CAVVVWNGALTSAYAMWAQTRGQAVVAPSEANLVYSLQPLFSTFFAVLILKESFRGVEMAGAGIVLASLLLATYRS 1423
            G  +LATVP+VWGTY P VK LY++    PG  F+ + + V+A     +           +   PS   S+   D  +      +AGLELG +LFLG ++QV GL+  ++ RA FLVQLTT+IVP+++A L R  + ++ W+AC LA+ G++++   G         E +   +S+  FS   L +        GD LI  +A+ YSLHVVRLG + ++   L L   KA+ E+  S +++++   V     GG          A  +  E+   F                       V+W G +++AY  +AQ+ GQ  V P++ANL+YSLQP+F+  FA  +L E+       G  ++  ++LLA   S
Sbjct:   86 GIFVLATVPVVWGTYVPVVKGLYEIDPPIPGFVFSTAYFAVAAVSAFGL-----------LSFQPSNESSLSSDDGWV----VLQAGLELGFYLFLGNSLQVLGLKTITSERAGFLVQLTTIIVPIVQAALLRSSVSSRTWIACVLALAGISIMGYDG---------EILKTQMSS--FSWPSLKD--------GDFLILGAAVVYSLHVVRLGRWANETSPLKLVAFKALTELILSIIALLLLTSVAPSSTGGIVPEAGLLTFAQETGLEISTFFETLQERIVSGTLTTSSIRLAVGAVLWTGLISTAYTTFAQSFGQRRVKPADANLIYSLQPIFTAIFAYFLLGETMGMYGFVGGSVIGGAVLLAASES 423          
BLAST of mRNA_A-nodosum_M_contig992.18.1 vs. uniprot
Match: A0A7S2HES8_9STRA (Hypothetical protein n=2 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HES8_9STRA)

HSP 1 Score: 175 bits (443), Expect = 3.060e-44
Identity = 129/377 (34.22%), Postives = 189/377 (50.13%), Query Frame = 2
Query:  383 GFILLATVPLVWGTYGPSVKYLYQMGDSTPGLFFNLSCYLVSAAFLTAIAWVNDARRHREVRSDPSEAKSVPPQDASLANSYAARAGLEL--------GAWLFLGGTVQVWGLELTSASRAAFLVQLTTVIVPVLEAVLGRRKL---KTQVWLACALAMVGVALVSLGGILPPGINAMEYIAGSLSAARFSPSGLLETITSKNIRGDLLIALSALFYSLHVVRLGAYVSKVETLSLARAKAIAEVGFSFLSVVVAGFVGGQWDN----------ISRYVAAL-------ASKPELLLVFCAVVVWNGALTSAYAMWAQTRGQAVVAPSEANLVYSLQPLFSTFFAVLILKESFRGVEMAGAGIVLASLLLATYRSDG 1429
            G ++L TVPL WGTY P VKY+Y++    PG  F+   Y+V++  L  +A +           D +  + V   +           G++L        G +LFLG  +QV GL+   A RAAFLVQLTT++VP+++A L  + L     + W+AC LA  GV ++ L G     ++  + +  SLS+       ++ T TS    GDLLI  +A  Y+LHVVRLG Y      + LA +KA  E   S   V+   F+ G  D           IS +  ++       A     LL     ++W G +T AY ++AQ+ GQ  V+P++ANL+Y+ QPLFS  FA  IL E+       GAG++ A+L L T    G
Sbjct:  113 GILVLMTVPLSWGTYAPVVKYVYEINPPVPGFVFSAGYYVVASLTLLTLASLTTTN------DDDTRKEGVETMEEG-----GVEEGMDLXXXXXXXXGLYLFLGNALQVIGLKTVPADRAAFLVQLTTIMVPLVQATLVEKNLWSISIKTWVACLLAFSGVVVMGLDG---KEMSGGDSVLSSLSS-------IVNTFTS----GDLLIVSAAFVYTLHVVRLGRYAPYTTPIRLAASKATTEAILSVGLVLALLFLTGSDDQASFVTQTSHEISTFFTSIQNSLTTNAIPITTLLPAVGAILWTGWITCAYTIYAQSFGQRRVSPTDANLIYTTQPLFSALFAWGILGETLGKEGYVGAGLIGAALWLVTDSGGG 464          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig992.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJG5_9PHAE5.930e-16070.14DMT protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
K0RU20_THAOC5.860e-5535.62EamA domain-containing protein n=1 Tax=Thalassiosi... [more]
A0A8J2ST49_9STRA2.770e-5039.35Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4GI16_9EUGL1.760e-4836.13Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S2LKU0_9STRA6.060e-4834.68Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7R9TUG6_9VIRI1.750e-4635.09Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A0G4H494_9ALVE8.030e-4635.71EamA domain-containing protein n=1 Tax=Chromera ve... [more]
A0A7S3AAI5_9RHOD2.460e-4537.06Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A1Z5KLH4_FISSO1.740e-4432.53Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S2HES8_9STRA3.060e-4434.22Hypothetical protein n=2 Tax=Helicotheca tamesis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig992contigA-nodosum_M_contig992:235473..240379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LTH6
PFAMsEamA
Model size1842
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons9
Evalue1.48e-167
EggNOG OGsCOG0697@1|root,2S6AJ@2759|Eukaryota
Ec32 ortholog descriptionEamA domain
Ec32 orthologEc-02_005650.1
DescriptionEamA-like transporter family
Cds size1284
COG categoryEG
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig992.18.1prot_A-nodosum_M_contig992.18.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig992 235624..239972 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870534.0074492-UTR-A-nodosum_M_contig992:235472..2356231680870534.0074492-UTR-A-nodosum_M_contig992:235472..235623Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig992 235473..235623 +
1680870534.1213722-UTR-A-nodosum_M_contig992:239972..2403791680870534.1213722-UTR-A-nodosum_M_contig992:239972..240379Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig992 239973..240379 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870534.0215828-CDS-A-nodosum_M_contig992:235623..2360321680870534.0215828-CDS-A-nodosum_M_contig992:235623..236032Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig992 235624..236032 +
1680870534.031692-CDS-A-nodosum_M_contig992:236587..2367121680870534.031692-CDS-A-nodosum_M_contig992:236587..236712Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig992 236588..236712 +
1680870534.0416667-CDS-A-nodosum_M_contig992:237135..2372491680870534.0416667-CDS-A-nodosum_M_contig992:237135..237249Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig992 237136..237249 +
1680870534.052924-CDS-A-nodosum_M_contig992:237719..2378161680870534.052924-CDS-A-nodosum_M_contig992:237719..237816Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig992 237720..237816 +
1680870534.0658426-CDS-A-nodosum_M_contig992:238173..2382991680870534.0658426-CDS-A-nodosum_M_contig992:238173..238299Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig992 238174..238299 +
1680870534.080904-CDS-A-nodosum_M_contig992:238645..2387721680870534.080904-CDS-A-nodosum_M_contig992:238645..238772Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig992 238646..238772 +
1680870534.0916576-CDS-A-nodosum_M_contig992:239061..2391971680870534.0916576-CDS-A-nodosum_M_contig992:239061..239197Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig992 239062..239197 +
1680870534.1015995-CDS-A-nodosum_M_contig992:239571..2396341680870534.1015995-CDS-A-nodosum_M_contig992:239571..239634Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig992 239572..239634 +
1680870534.1114607-CDS-A-nodosum_M_contig992:239885..2399721680870534.1114607-CDS-A-nodosum_M_contig992:239885..239972Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig992 239886..239972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig992.18.1

>prot_A-nodosum_M_contig992.18.1 ID=prot_A-nodosum_M_contig992.18.1|Name=mRNA_A-nodosum_M_contig992.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=428bp
MERTSGGEGNLSGQGRWGKGVRARRRATNAGLSETVPIDLAANDADVKAG
QMPAINDDSSSVAANSPRESGGRSDRRGFILLATVPLVWGTYGPSVKYLY
QMGDSTPGLFFNLSCYLVSAAFLTAIAWVNDARRHREVRSDPSEAKSVPP
QDASLANSYAARAGLELGAWLFLGGTVQVWGLELTSASRAAFLVQLTTVI
VPVLEAVLGRRKLKTQVWLACALAMVGVALVSLGGILPPGINAMEYIAGS
LSAARFSPSGLLETITSKNIRGDLLIALSALFYSLHVVRLGAYVSKVETL
SLARAKAIAEVGFSFLSVVVAGFVGGQWDNISRYVAALASKPELLLVFCA
VVVWNGALTSAYAMWAQTRGQAVVAPSEANLVYSLQPLFSTFFAVLILKE
SFRGVEMAGAGIVLASLLLATYRSDGK*
back to top

mRNA from alignment at A-nodosum_M_contig992:235473..240379+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig992.18.1 ID=mRNA_A-nodosum_M_contig992.18.1|Name=mRNA_A-nodosum_M_contig992.18.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4907bp|location=Sequence derived from alignment at A-nodosum_M_contig992:235473..240379+ (Ascophyllum nodosum dioecious)
GGCTATCGCTCGAGAGGCCGTAGGATTCTGCTGCTTTCACGGCTTGGCAG CTGGCCCGGAGTCGCCAACACCGTACTCACGTGTTCTACATAAAGTTTCC TATCGATACTCTAGTTGTGCCGCACTTATCGAGCCTTCAACCAGGCTCTA CATGGAGCGGACCTCGGGAGGGGAAGGCAATCTCTCGGGGCAGGGACGTT GGGGTAAAGGCGTTCGCGCCCGTCGGCGTGCCACCAACGCCGGGTTATCG GAAACAGTGCCGATTGACCTCGCAGCAAACGATGCTGACGTGAAGGCTGG CCAGATGCCAGCGATAAACGACGACAGCAGCAGCGTAGCCGCAAATTCAC CCAGGGAGTCCGGTGGGCGCTCGGATCGGAGAGGCTTTATTTTGCTCGCC ACCGTACCGCTCGTGTGGGGCACGTACGGACCATCCGTGAAGTACTTGTA TCAAATGGGCGACTCCACGCCAGGGTTGTTTTTCAACTTAAGTTGCTACT TGGTGTCGGCGGCGTTTCTAACGGCCATCGCGTGGGTCAACGATGCCCGG CGACATAGAGGTGAGCGACTCGATGCGACCACGACGGCGAGGTTCATAGA ACAGACAACAGCAAAGGTTGTTCGGGAATGGATGAAGCATCACAAGGCTA CTATGCCCCGAGAGTCGTGATAGAATGGAGGCGTTCCTTGGTCACTCCCG CCTAACTTGTCTCCAAGTACCCGATTGTGTAACCTATCAACACAACTTTG TCAAAATAGCAAGTCTTTCTTTTGGCGCACCGTGCAACGGATACACAGAC AGTAGCTCGGAGGACTTCCTCCCTGAACTAAGAATAGTCTACCAGGCGCT TTGGCCGGTAGGCATCTGAGAAAGGGAAAAGGAATGAAGTCGATCTAGCT CTGGAACCTCAGCTTGACACAGTTTCTAGCACAGGGACCCAGATATTGTG TCACTAGCATGAAGCGTGCGTCATGTGTGCAGGTTCTTTACAACTTGTAC GATTGTCTAGCTTCCCTCGCTAACCAAGCTGGTCGCCTCTAGCTCCAAAC GCCCCTCGCTCCTTTTTTACTCAACGAGTTGTGCTCCTGAAAACCGGAAA CCTCTCGTTTCTCAGAAGTGCGCTCAGATCCGTCCGAAGCGAAGTCGGTA CCTCCGCAAGACGCATCTCTCGCCAACAGCTACGCCGCTCGAGCTGGGCT CGAGCTGGGCGCTTGGCTGTTCCTGGGAGGCACTGTACAGGCGAGCGACG AGCGCACTCCCGACATGTCTACCTTCGCTCGTGCGTGATTAACTCGCAAC AAGCTTGCCGTGTGCATGCCGATGCCGCGGTGTCGTACGATGCAACAAGC CATCGTGTTCTAGTCCACGCGCGAACTGGAGGTGCGGTCTATACACTATA CACTATGCTTTACCTTATTTGAGACAGAAAATGGCAGGGCGGAAAATCGT CCCGTCGTCCCTATCCTCTCTAATATGAAGAGGTGTCGTTGTCTCAAGAA CCCTGAGAATCTCTTCCGCGAACGTCATCTCGCGGCCTGAGCGTGCGAGC TTGCCCCGGCCCCCCCCCTCCGTTCCTCCTGTCCTTTCGTGATCCTCGAA ATATGGAACCTTCCCGACTGAAGTGAAACCGTTCGCTTCGCCTCTGGCTG CGCCGGTGACCAGGTGTGGGGTCTCGAGCTCACGTCTGCAAGCCGCGCTG CTTTCTTGGTCCAGCTCACGACGGTCATCGTGCCTGTGTTAGAAGCCGTC CTGGGGCGGAGGAAGCTCAAGACACAGGTGCGCCTGCCGCCTTCCACATT TCGTTTGATTTCAGAGTCCCTTTCCTCGGAAAGCACATCGGCGGTCGACG CCAACAGCGCTGTCGGCAAGAGTGGGCTCTGCGATGCCTTTTGAACCAGG GTTTAATAGCAGCGGACTCTCCGCAGGCGTCATAGCAAGCAGCTTCACCC CGCGACGCGCTTGTTTTCCTCCGCGAGAAGCCTTTTGATCTCAATTGAAA CCTCTTACAGCACGATACGACAGGTGTATTTTACACCGTACACCGCGCAC GCCGGTCACATTTTGTGACACCATTCCCAGTGGAAACGGAGGCAGCAGAT TGAAACTGGCCCGGCATGTGTCAACGACGCCCAATTTTCGTTTAGCGTCT CATTCGTCATTCGTTTTTGACCCCGAGTAAAAAGAAAAGTGAGGCAAGCA AAACGGCCGAACACGTCAGAATGACGTAACACGTCCGTATGACGCAGGTT TGGTTGGCTTGCGCGCTGGCCATGGTGGGAGTAGCACTGGTCAGCCTCGG TGGTATTCTTCCCCCGGGGATTAACGCGATGGAATACATAGCTGGTAAGA GCACAGGATTTTTCGCAATTTTCACCAGTGCATATTGTGTTGAGGTCTGA TGGCTGAAGGGGTCCCCGACAAACCTTGTCTTTCCTCTACGCACTACCAC GAAAACGAAGCTCACGTGTGTGTAGTACCTGCAGACCTCGCCGGGGATGA ATTGCCCCGCGCTCTATCGCGAGGCGATCTTGAGGGCCTCGCGGTTACGC TCAGCGCAGAAAGCCTAGGCGAGGGTAACGTCATATTATTTGAGCCATTC ATTCTTGGGGCCGCACCCATAGAACTGGAAAAGACGAGAGCTTTCTCTCG TCCAAGCTTGCGTCCGAAAAACACGGGTTCGCGCCCTTTGCGTCCGCGCA GGTTCGCTCTCGGCCGCCCGTTTTTCGCCTTCAGGTCTGCTGGAGACCAT CACGAGCAAAAATATTCGAGGGGATCTCCTGATAGCCTTGTCCGCTTTGT TTTACTCTCTCCACGTGGTACGATTAGGTGAGGAAAGACACCACGAAAGT CATGAGCCCTCTTCGCACAGCTAGGGGCGGGGATGTATCTCTCTGTCGAC TTGATTCGGTAACGAAGTACTTTTATTATTATAAGAGGAGACTAGTTTGT ACTGTAATATTTATAGAGCTGTAGTGCTATGTACAGAGTTGGCTATCGTC GAAAAACGGGGGTTAGGCTCGACACCACGGCAAATGTTTCGTGCTTACGA GGCATCACCGATATTGCGGCGAGATCGCAGCAGCGAAGCGCACGTGGCTG TCGGCTGGAGCAACGTCCGCGTTCGCTGACCGTCGGTGTCGCTCTCAAAT TTTGTTTTGTTTTTCTCAAGCAGGCGCGTACGTGTCGAAGGTGGAGACAC TGTCTCTGGCTCGGGCGAAGGCGATCGCGGAGGTGGGGTTCTCGTTTCTC TCAGTGGTCGTGGCAGGATTCGTGGGCGGACAGTGGGACAATATCTCGAG GTAGGCTGTTGAGGGGTGAACGAAGGAGACTTACCCCTCTAACGTGAAGG AGATCTACACAGAGATACTCAGCAAGGCAAGGTCCGGTGCTGGATAAACG GTTGGAAACCCAGTGGGTTAAAGAGTGCTCTCGCCTCGAGGGATCGTTTC AGAAATATGCGCGAACCGGCCTGGATAGTTGCTCGCGAGCCAGTACGTTT CCGTTGTCCAACGAGCAACACGTGGCCGTTCTGTCCATTTGTCGAAGAGC AACCTCCGCGCCTCGCGTGACGTCATGAAATGCGCACAGATATGTCGCGG CTTTGGCTTCGAAACCTGAACTCTTGTTGGTTTTCTGTGCTGTAGTGGTT TGGAACGGTGCTCTGACGAGCGCGTACGCGATGTGGGCGCAAACCCGGGG ACAAGCTGTGGTGGCCCCGAGCGAAGTGAGCCAAAGTATTTACTCCGTAT ATATATATTTTTTCTTCCCTCGTTTTTTTTCGATGTGTAGACGCGCGAGA AACAAATAACGGTCTGTTTTCTGCGTGGATCTGTAATCGCAAAGTGCTGC GTGCGGTGGGGCGCAAGGTGAGGAGACGCGCCAAGGCTATAATCTCTTGA CTACGCACACCGAGTGCGATTTGAATACCTTAGGTACATTCTTTTCGTTG GGCAGGCGTGCGGCCGATTCTCGAAGCTCACGACATCCTTCCTTGATCCT CTCGCCTCTCTCGCTTCTTCTAACGTATCTGTAATCTCTCGCGTCTGGCC GCACATGCTTTATGCCTTCTCCGTCCTCCTCTGCCGTGTTCTGTCACAGG CTAACCTGGTCTACTCATTGCAGCCCTTGTTTTCCACATTTTTTGCCGTC TTGATCCTCAAGGTACGCCACGCTCCTCCGAATTGCTTTTCATTTCCGTC CCCCCTTAATCTCCTGTCAAAACCGTAGATTATTCCCCAGAGTCCTGGTT TCTAGTCACTGAGCCGCGAAAAAAACTGCCCAAGGTTTGGCGGCTGAACC GCCGGAGACCGCGAAAGCGTCAACTCTCGCCTCGGCAGAAATATTGACCG TTCGCCTGCGGAAAGAACTTTTACAGCGACCCATTGCCTCGTACCCATGC TGTTGGCTCGCAGGAGTCCTTCCGAGGAGTGGAGATGGCGGGAGCGGGGA TTGTCCTAGCTTCGCTCTTGCTTGCAACGTATCGAAGCGACGGAAAATAA TCTTACACGGTGGACGCGGCATCACCGGAATACCGGTAGTGATCCGTTAC TGCTACGATGAAGACTGGCTCTCTCTTGGCGGGTCGTCGGTAGGGTGCTG ACGAGAATGTTGTGCTTAAGGCAGTGAGTCGAGTCAGCCGATCGCATGGA GAACGAATAGACTCCATCCCTTGAACCTGGGAGAAAAATAAAGATGTTCA TGACAAAATCTATGCTCGCGTACACGCGCTGGTTGAACCGTGCTTTCATG TATTCGTGCCGTTGCCGTTTTAGTGCCACTGCTGTCGATGCTCCCATACT TTTTAGGTTTTCTTCTCAAGTGTAGTGTAGAGCTGACACCATTTTGGCCG TGTGCAGCGCACGAGGACGTCCCTCGCCTCAACGCGCGCTCCTCTCAAGT GTCTCGG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig992:235473..240379+

>mRNA_A-nodosum_M_contig992.18.1 ID=mRNA_A-nodosum_M_contig992.18.1|Name=mRNA_A-nodosum_M_contig992.18.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1284bp|location=Sequence derived from alignment at A-nodosum_M_contig992:235473..240379+ (Ascophyllum nodosum dioecious)
ATGGAGCGGACCTCGGGAGGGGAAGGCAATCTCTCGGGGCAGGGACGTTG
GGGTAAAGGCGTTCGCGCCCGTCGGCGTGCCACCAACGCCGGGTTATCGG
AAACAGTGCCGATTGACCTCGCAGCAAACGATGCTGACGTGAAGGCTGGC
CAGATGCCAGCGATAAACGACGACAGCAGCAGCGTAGCCGCAAATTCACC
CAGGGAGTCCGGTGGGCGCTCGGATCGGAGAGGCTTTATTTTGCTCGCCA
CCGTACCGCTCGTGTGGGGCACGTACGGACCATCCGTGAAGTACTTGTAT
CAAATGGGCGACTCCACGCCAGGGTTGTTTTTCAACTTAAGTTGCTACTT
GGTGTCGGCGGCGTTTCTAACGGCCATCGCGTGGGTCAACGATGCCCGGC
GACATAGAGAAGTGCGCTCAGATCCGTCCGAAGCGAAGTCGGTACCTCCG
CAAGACGCATCTCTCGCCAACAGCTACGCCGCTCGAGCTGGGCTCGAGCT
GGGCGCTTGGCTGTTCCTGGGAGGCACTGTACAGGTGTGGGGTCTCGAGC
TCACGTCTGCAAGCCGCGCTGCTTTCTTGGTCCAGCTCACGACGGTCATC
GTGCCTGTGTTAGAAGCCGTCCTGGGGCGGAGGAAGCTCAAGACACAGGT
TTGGTTGGCTTGCGCGCTGGCCATGGTGGGAGTAGCACTGGTCAGCCTCG
GTGGTATTCTTCCCCCGGGGATTAACGCGATGGAATACATAGCTGGTTCG
CTCTCGGCCGCCCGTTTTTCGCCTTCAGGTCTGCTGGAGACCATCACGAG
CAAAAATATTCGAGGGGATCTCCTGATAGCCTTGTCCGCTTTGTTTTACT
CTCTCCACGTGGTACGATTAGGCGCGTACGTGTCGAAGGTGGAGACACTG
TCTCTGGCTCGGGCGAAGGCGATCGCGGAGGTGGGGTTCTCGTTTCTCTC
AGTGGTCGTGGCAGGATTCGTGGGCGGACAGTGGGACAATATCTCGAGAT
ATGTCGCGGCTTTGGCTTCGAAACCTGAACTCTTGTTGGTTTTCTGTGCT
GTAGTGGTTTGGAACGGTGCTCTGACGAGCGCGTACGCGATGTGGGCGCA
AACCCGGGGACAAGCTGTGGTGGCCCCGAGCGAAGCTAACCTGGTCTACT
CATTGCAGCCCTTGTTTTCCACATTTTTTGCCGTCTTGATCCTCAAGGAG
TCCTTCCGAGGAGTGGAGATGGCGGGAGCGGGGATTGTCCTAGCTTCGCT
CTTGCTTGCAACGTATCGAAGCGACGGAAAATAA
back to top