mRNA_A-nodosum_M_contig99.71.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig99.71.1
Unique NamemRNA_A-nodosum_M_contig99.71.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig99.71.1 vs. uniprot
Match: A0A6H5JG07_9PHAE (Rubredoxin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JG07_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 1.720e-45
Identity = 70/96 (72.92%), Postives = 78/96 (81.25%), Query Frame = 1
Query:   10 GDYECTQCSFVYSPFKDGQGALSGTQFEELPSSWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGYLLE 297
            GD+EC QC FVY P   GQGAL GTQF++LPS+W+CPVCK+PKDTF AQTKTIAGFEDN  YG GAN MT  QKNLLIFG L AFF+LFL GY L+
Sbjct:  135 GDHECLQCGFVYKPENAGQGALPGTQFDDLPSTWICPVCKAPKDTFFAQTKTIAGFEDNANYGFGANQMTGSQKNLLIFGGLFAFFVLFLAGYALD 230          
BLAST of mRNA_A-nodosum_M_contig99.71.1 vs. uniprot
Match: A0A7S2RF64_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RF64_9STRA)

HSP 1 Score: 122 bits (306), Expect = 9.770e-34
Identity = 61/96 (63.54%), Postives = 68/96 (70.83%), Query Frame = 1
Query:   10 GDYECTQCSFVYSPFKDGQGALSGTQFEELPSSWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGYLLE 297
            G  EC  C +VY        A  GTQF ELPSSW CP C S K  F  QT+T+AGFE+N QYG G N+MTAG+KN LIFGSLAAFF+LFLGGYLLE
Sbjct:   51 GRAECKTCGYVYDE------ATEGTQFVELPSSWRCPQCLSQKGFFEVQTRTLAGFEENLQYGFGTNTMTAGEKNNLIFGSLAAFFVLFLGGYLLE 140          
BLAST of mRNA_A-nodosum_M_contig99.71.1 vs. uniprot
Match: A0A6S9ELN9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9ELN9_HETAK)

HSP 1 Score: 120 bits (300), Expect = 4.990e-32
Identity = 55/99 (55.56%), Postives = 69/99 (69.70%), Query Frame = 1
Query:    1 RYAGDYECTQCSFVYSPFKDGQGALSGTQFEELPSSWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGYLLE 297
            +  G+++C+QC++VY P +  +  L GT F +LP+ + CP C +PK  F A T TIAGFEDNQ YG G NSMT  QKN LIFG LA FF LFL GYLL+
Sbjct:  108 KMTGEFQCSQCNYVYKPDEGERNILPGTSFADLPTGYQCPECGAPKSFFDALTVTIAGFEDNQGYGFGTNSMTGDQKNTLIFGGLAFFFALFLSGYLLD 206          
BLAST of mRNA_A-nodosum_M_contig99.71.1 vs. uniprot
Match: A0A0G4EEM1_VITBC (Rubredoxin-like domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EEM1_VITBC)

HSP 1 Score: 120 bits (300), Expect = 1.120e-31
Identity = 57/98 (58.16%), Postives = 73/98 (74.49%), Query Frame = 1
Query:   10 GDYECTQCSFVYSPFKDGQGAL--SGTQFEELPSSWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGYLLE 297
            GDY+C  C +VY  +K G G    + T++E++P+ W CP CK+PK+ F   T+TIAGF DNQ YG+G N++TAGQKN+LIFGSL  FFLLFL GYLLE
Sbjct:  142 GDYQCRNCGYVYR-WKQGDGIYLKANTKWEDVPTWWKCPNCKAPKNYFNPITRTIAGFADNQGYGIGTNTLTAGQKNVLIFGSLGLFFLLFLSGYLLE 238          
BLAST of mRNA_A-nodosum_M_contig99.71.1 vs. uniprot
Match: A0A7S0GMA1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GMA1_9EUKA)

HSP 1 Score: 118 bits (295), Expect = 5.730e-31
Identity = 56/95 (58.95%), Postives = 65/95 (68.42%), Query Frame = 1
Query:   10 GDYECTQCSFVYSPFKDGQGAL--SGTQFEELPSSWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGY 288
            GD+EC +C FVY        +L   GT FE+LP  WLCPVC  PKDTF  Q K +AGF +NQ YG G NS+T GQK+ LI+GSLAAFF LFL GY
Sbjct:  137 GDFECVECQFVYKAENGDPESLIAKGTAFEDLPEDWLCPVCGQPKDTFEEQGKIVAGFAENQGYGFGTNSLTEGQKSALIYGSLAAFFALFLLGY 231          
BLAST of mRNA_A-nodosum_M_contig99.71.1 vs. uniprot
Match: A0A7S3K377_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K377_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.700e-29
Identity = 57/99 (57.58%), Postives = 68/99 (68.69%), Query Frame = 1
Query:   10 GDYECTQCSFVYSPFKDGQ---GALSGTQFEELPSSWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGYLLE 297
            G Y C  CS+ Y P + GQ   G   GT F +LP+SW CP C++ KD F  QT TIAGF +NQ YGLG N+MT   K+ LIFGSLAAFF+LF+GGYLL 
Sbjct:   93 GIYICKVCSYKYDP-EVGQPIGGIQPGTPFSQLPASWRCPTCRAQKDAFEPQTLTIAGFAENQGYGLGGNAMTEESKSTLIFGSLAAFFVLFMGGYLLN 190          
BLAST of mRNA_A-nodosum_M_contig99.71.1 vs. uniprot
Match: A0A2V3IE15_9FLOR (Rubredoxin n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IE15_9FLOR)

HSP 1 Score: 112 bits (281), Expect = 4.230e-29
Identity = 54/96 (56.25%), Postives = 65/96 (67.71%), Query Frame = 1
Query:   10 GDYECTQCSFVYSPFKDGQ---GALSGTQFEELPSSWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGY 288
            G YEC  C + Y P K G+   G   GT FE+LP+++ CPVC++PK  F+++ K IAGF DNQ YG G NSMTAGQKNLLIFG L    LL L GY
Sbjct:  115 GRYECPACGYTYEP-KQGEKQAGIQPGTPFEQLPATYFCPVCRTPKSRFISKKKVIAGFADNQSYGFGTNSMTAGQKNLLIFGGLVFAALLLLSGY 209          
BLAST of mRNA_A-nodosum_M_contig99.71.1 vs. uniprot
Match: B5YMM0_THAPS (Rubredoxin, rubredoxin-type Fe4 protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMM0_THAPS)

HSP 1 Score: 110 bits (275), Expect = 5.110e-29
Identity = 53/103 (51.46%), Postives = 67/103 (65.05%), Query Frame = 1
Query:    1 RYAGDYECTQCSFVYSPFKDGQGALSG-----TQFEELPSSWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGYLL 294
            R  G ++C+ C + Y P K     + G     T FEELPS+W CP C++ KD+F    +TI GFE NQ YG G N+MT G+KN LI+G LAAFFLLF+GGY L
Sbjct:   39 RSTGIHKCSNCDWEYDPAKGDSFLIGGMIKPDTPFEELPSNWRCPTCRASKDSFREVVETIPGFEVNQGYGFGTNAMTTGEKNALIWGGLAAFFLLFIGGYAL 141          
BLAST of mRNA_A-nodosum_M_contig99.71.1 vs. uniprot
Match: C1EAE7_MICCC (Rubredoxin-like domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EAE7_MICCC)

HSP 1 Score: 110 bits (275), Expect = 1.450e-28
Identity = 51/100 (51.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:    7 AGDYECTQCSFVYSPFKDGQG---ALSGTQFEELPSSWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGYLLE 297
            +G+++C  C +VY+P K+G       SGT F++LP  WLCP C +   TF +  K +AGFE NQ YG G NSM+ G+K++LI+G+LA FF LFLGGYLL+
Sbjct:   81 SGEHQCQSCLYVYNP-KNGDPDYPVASGTAFKDLPEDWLCPTCGAAPKTFKSLGKEVAGFEQNQGYGFGTNSMSGGEKSILIYGALALFFALFLGGYLLD 179          
BLAST of mRNA_A-nodosum_M_contig99.71.1 vs. uniprot
Match: Q9XG40_GUITH (Rubredoxin n=1 Tax=Guillardia theta TaxID=55529 RepID=Q9XG40_GUITH)

HSP 1 Score: 108 bits (271), Expect = 3.410e-28
Identity = 51/98 (52.04%), Postives = 66/98 (67.35%), Query Frame = 1
Query:   10 GDYECTQCSFVYSPFKDGQ--GALSGTQFEELPSSWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGYLLE 297
            G YEC  C ++Y P K  +  G   GT F +L  S++CP C+SPK+ F +  K IAGF +NQ+YGLG NS+T+GQKN LI+G L   FLL L GYL+E
Sbjct:   62 GKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSPKNQFKSIKKVIAGFAENQKYGLGGNSLTSGQKNTLIYGVLVLLFLLLLSGYLIE 159          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig99.71.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JG07_9PHAE1.720e-4572.92Rubredoxin-like domain-containing protein n=2 Tax=... [more]
A0A7S2RF64_9STRA9.770e-3463.54Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6S9ELN9_HETAK4.990e-3255.56Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4EEM1_VITBC1.120e-3158.16Rubredoxin-like domain-containing protein n=2 Tax=... [more]
A0A7S0GMA1_9EUKA5.730e-3158.95Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S3K377_9STRA1.700e-2957.58Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A2V3IE15_9FLOR4.230e-2956.25Rubredoxin n=1 Tax=Gracilariopsis chorda TaxID=448... [more]
B5YMM0_THAPS5.110e-2951.46Rubredoxin, rubredoxin-type Fe4 protein (Fragment)... [more]
C1EAE7_MICCC1.450e-2851.00Rubredoxin-like domain-containing protein n=1 Tax=... [more]
Q9XG40_GUITH3.410e-2852.04Rubredoxin n=1 Tax=Guillardia theta TaxID=55529 Re... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig99contigA-nodosum_M_contig99:636877..637176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FU16
PFAMsRubredoxin
Model size300
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.73e-47
EggNOG OGsCOG1773@1|root,2S3MR@2759|Eukaryota
Ec32 ortholog descriptionRubredoxin
Ec32 orthologEc-27_001080.1
DescriptionRubredoxin
Cds size300
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870527.4212766-CDS-A-nodosum_M_contig99:636876..6371761680870527.4212766-CDS-A-nodosum_M_contig99:636876..637176Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig99 636877..637176 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig99.71.1prot_A-nodosum_M_contig99.71.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig99 636877..637176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig99.71.1

>prot_A-nodosum_M_contig99.71.1 ID=prot_A-nodosum_M_contig99.71.1|Name=mRNA_A-nodosum_M_contig99.71.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=100bp
RYAGDYECTQCSFVYSPFKDGQGALSGTQFEELPSSWLCPVCKSPKDTFV
AQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGYLLE*
back to top

mRNA from alignment at A-nodosum_M_contig99:636877..637176+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig99.71.1 ID=mRNA_A-nodosum_M_contig99.71.1|Name=mRNA_A-nodosum_M_contig99.71.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at A-nodosum_M_contig99:636877..637176+ (Ascophyllum nodosum dioecious)
CGCTACGCAGGCGACTACGAGTGCACCCAATGTTCATTCGTGTACAGTCC CTTCAAGGACGGCCAGGGAGCGCTTTCGGGGACGCAGTTCGAGGAACTCC CGTCGTCGTGGCTGTGCCCCGTCTGCAAGTCCCCCAAGGATACCTTTGTT GCGCAGACCAAGACGATCGCGGGTTTCGAGGACAACCAACAGTACGGACT CGGGGCTAACTCGATGACAGCGGGGCAGAAGAATTTGCTCATCTTTGGGA GCCTGGCAGCATTCTTTTTGCTCTTCCTTGGGGGATATCTTCTGGAGTAG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig99:636877..637176+

>mRNA_A-nodosum_M_contig99.71.1 ID=mRNA_A-nodosum_M_contig99.71.1|Name=mRNA_A-nodosum_M_contig99.71.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at A-nodosum_M_contig99:636877..637176+ (Ascophyllum nodosum dioecious)
CGCTACGCAGGCGACTACGAGTGCACCCAATGTTCATTCGTGTACAGTCC
CTTCAAGGACGGCCAGGGAGCGCTTTCGGGGACGCAGTTCGAGGAACTCC
CGTCGTCGTGGCTGTGCCCCGTCTGCAAGTCCCCCAAGGATACCTTTGTT
GCGCAGACCAAGACGATCGCGGGTTTCGAGGACAACCAACAGTACGGACT
CGGGGCTAACTCGATGACAGCGGGGCAGAAGAATTTGCTCATCTTTGGGA
GCCTGGCAGCATTCTTTTTGCTCTTCCTTGGGGGATATCTTCTGGAGTAG
back to top