mRNA_A-nodosum_M_contig99.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig99.7.1
Unique NamemRNA_A-nodosum_M_contig99.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig99.7.1 vs. uniprot
Match: A0A6H5KVV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV7_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 9.360e-12
Identity = 58/125 (46.40%), Postives = 62/125 (49.60%), Query Frame = 1 
Query:    1 GIKLRPRETKALLRALDVSPHRFVSLGLVDGL-------GDPPHGPHHLRPGHPPGMGKHGHGS-RFGRNIGHSR------PPPHGRHHS-------GRHLHLSGSDSE---GKY---GRPMHGP 294
            GI LRPRET+ LLRAL V PHR V LGLV          G    GP HLR GHP G G   H   R GR +G  R      PPPH   H        G HLH SG   E   G +   GRP+HGP
Sbjct:  151 GITLRPRETRPLLRALGVGPHRLVKLGLVQREELRRSRPGGRRGGPSHLRHGHPGGPGGRXHXXXRGGRGMGRPRGPPPYGPPPHRHVHGHGKRRAHGDHLHSSGPVHEPPPGPFHESGRPLHGP 275
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig99.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KVV7_9PHAE9.360e-1246.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig99contigA-nodosum_M_contig99:105528..105887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size362
Hectar predicted targeting categoryother localisation
Exons1
Cds size360
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870524.6258357-CDS-A-nodosum_M_contig99:105527..1058871680870524.6258357-CDS-A-nodosum_M_contig99:105527..105887Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig99 105528..105887 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig99.7.1prot_A-nodosum_M_contig99.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig99 105528..105887 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig99.7.1

>prot_A-nodosum_M_contig99.7.1 ID=prot_A-nodosum_M_contig99.7.1|Name=mRNA_A-nodosum_M_contig99.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=120bp
GIKLRPRETKALLRALDVSPHRFVSLGLVDGLGDPPHGPHHLRPGHPPGM
GKHGHGSRFGRNIGHSRPPPHGRHHSGRHLHLSGSDSEGKYGRPMHGPPR
HHGPPRGRHGGGRRGHSGSP
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mRNA from alignment at A-nodosum_M_contig99:105528..105887+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig99.7.1 ID=mRNA_A-nodosum_M_contig99.7.1|Name=mRNA_A-nodosum_M_contig99.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=360bp|location=Sequence derived from alignment at A-nodosum_M_contig99:105528..105887+ (Ascophyllum nodosum dioecious)
GGCATCAAACTGCGTCCCCGCGAGACCAAGGCCCTGCTTCGCGCTCTCGA
CGTGAGCCCCCACCGCTTCGTAAGCCTCGGGCTCGTGGACGGCCTTGGAG
ATCCTCCGCACGGCCCACACCACCTTCGTCCGGGACACCCACCCGGCATG
GGCAAACACGGCCATGGTTCTCGATTTGGTAGGAACATAGGGCATTCTAG
GCCCCCGCCTCACGGTCGGCACCACTCCGGCCGTCACCTGCACCTGTCCG
GCAGCGATTCTGAGGGGAAGTACGGCAGGCCGATGCACGGCCCTCCACGC
CACCATGGCCCGCCTCGCGGTCGGCACGGCGGCGGCAGGAGGGGGCACTC
TGGGTCCCCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig99:105528..105887+

>mRNA_A-nodosum_M_contig99.7.1 ID=mRNA_A-nodosum_M_contig99.7.1|Name=mRNA_A-nodosum_M_contig99.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at A-nodosum_M_contig99:105528..105887+ (Ascophyllum nodosum dioecious)
GGCATCAAACTGCGTCCCCGCGAGACCAAGGCCCTGCTTCGCGCTCTCGA
CGTGAGCCCCCACCGCTTCGTAAGCCTCGGGCTCGTGGACGGCCTTGGAG
ATCCTCCGCACGGCCCACACCACCTTCGTCCGGGACACCCACCCGGCATG
GGCAAACACGGCCATGGTTCTCGATTTGGTAGGAACATAGGGCATTCTAG
GCCCCCGCCTCACGGTCGGCACCACTCCGGCCGTCACCTGCACCTGTCCG
GCAGCGATTCTGAGGGGAAGTACGGCAGGCCGATGCACGGCCCTCCACGC
CACCATGGCCCGCCTCGCGGTCGGCACGGCGGCGGCAGGAGGGGGCACTC
TGGGTCCCCG
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