mRNA_A-nodosum_M_contig99.49.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig99.49.1
Unique NamemRNA_A-nodosum_M_contig99.49.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig99.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig99contigA-nodosum_M_contig99:463188..464727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size267
Hectar predicted targeting categoryother localisation
Exons2
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870524.47979-CDS-A-nodosum_M_contig99:463187..4633551680870524.47979-CDS-A-nodosum_M_contig99:463187..463355Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig99 463188..463355 -
1680870524.4903674-CDS-A-nodosum_M_contig99:464628..4647151680870524.4903674-CDS-A-nodosum_M_contig99:464628..464715Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig99 464629..464715 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870524.505538-UTR-A-nodosum_M_contig99:464715..4647271680870524.505538-UTR-A-nodosum_M_contig99:464715..464727Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig99 464716..464727 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig99.49.1prot_A-nodosum_M_contig99.49.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig99 463188..464715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig99.49.1

>prot_A-nodosum_M_contig99.49.1 ID=prot_A-nodosum_M_contig99.49.1|Name=mRNA_A-nodosum_M_contig99.49.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=85bp
MVATVLDHDRELLYDIWKREYAYEGEEEQRKWDEVINFTLKVGSPLFYMH
ILANCIRRPIIVISDDHPREADLSYIDSVKLQSV*
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mRNA from alignment at A-nodosum_M_contig99:463188..464727-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig99.49.1 ID=mRNA_A-nodosum_M_contig99.49.1|Name=mRNA_A-nodosum_M_contig99.49.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1540bp|location=Sequence derived from alignment at A-nodosum_M_contig99:463188..464727- (Ascophyllum nodosum dioecious)
GTGCTCCAGAACATGGTGGCCACGGTCCTTGACCACGACCGTGAGCTCCT
GTACGACATTTGGAAGCGCGAGTACGCATATGAAGGGGAGGAAGAGCAGG
CGAGCTTATGCTGTACCAGTAGTTGGTATCTGTTACTTTTTTGTAATTGC
TATTTGCTGTACAGTACTCCAGTAATGTGCACTCTACTCTATTCATAAAC
TTTGTCAGTTACAGTATTAATAATGGTTAGTGGTTCCACCCGCAGGGAAA
CGGAGTAATAATCAAGAAAACGGTCAAACATACATGTATGTGTATGTATG
TATGTATGTATGTATGTATGTATGGTCATCACACATAGCAGGGTATGGAT
CAACCGGATGAGGTTACCAATCCTGCTCGTGACCAGCCGAAGAGGGAAAA
TGAATAGTCCCCTGTCCCCGTACGTGCCTGAGAATTTTGGTCTCGCGAGA
CGGGTTCAGCCATCCCGTCCCGCGCCAGCCTCCTCATTCTCCATACTCGG
GCTGAATCTGGTGCTTACTCATGGGATTCCTCCCGATTTCCGCGGCGGCG
TCTATTTATTACGGTATTTATTTTAAACCACCATACGCCATCGGGTCAGT
GCCGACTTTATCGGGTCACGCAATTGCGTACCAATGACGTTCACTGCCGA
GAGTCCGCCGGCACAGGGCCAGTAGTCCTCAAGGTAGTTCCAGTGACGGG
TGCTGCCATTTTGCAGGTCACCAAAGACCAATTAATATGCGCCTCTCTTT
TCCCGCACCCACTATACTAATATCGGTATGAAGTGGGCATGTTGAAAGAA
GGCATCGTACACGCATTCCTGAAAAAGAGTCAAGGAACATGTTCCTACTG
TATTAATATTATTATAATATCATGGAGTTAATATTGATTTTAATGTGTCG
CCTTAGTCGTGGATTAACCTCGTACAGTAGTTATTTATAATTCAATATCC
GGTACCTGGTATATATTATGTCACGAACTATGATAGTATAGAGTACCCGG
TACTAGAAAAATACAGTACAGTCACTGTTCATACCGGTAGTATATTATAT
ATTATAGTAGTCCAAGTACATACCCTTTTACGCTTGAAACATTTTTTTCT
TCGAACACGAGGACCTTTTTGATGATGCTGCATCTCATCTACCAGGTAAT
ATCTAATGCTCGATGCTATTAATAGGTCGGGGGCGAAAGATCATCTATAT
CGAATCATGTGCTGCAACACGATAACCGAAGAAAAAAGACAGACTTAAGA
GTAGGAGCAATAACTCGCACACAGATTATGAACTTTTGTACTGCTTGTGT
GTAACCTATATATGCCCTCCCTTCTCCCTCTCCCCCTCCCTCTCCCTGAT
GACATTTATTAATAATTAATAGCGCAAATGGGACGAGGTCATCAACTTCA
CCTTGAAGGTCGGCTCCCCCCTCTTCTATATGCATATCCTGGCGAACTGC
ATCCGTCGGCCGATCATCGTTATCAGCGATGATCACCCTCGGGAGGCAGA
TCTAAGCTACATCGACTCAGTTAAACTTCAGTCCGTGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig99:463188..464727-

>mRNA_A-nodosum_M_contig99.49.1 ID=mRNA_A-nodosum_M_contig99.49.1|Name=mRNA_A-nodosum_M_contig99.49.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=255bp|location=Sequence derived from alignment at A-nodosum_M_contig99:463188..464727- (Ascophyllum nodosum dioecious)
ATGGTGGCCACGGTCCTTGACCACGACCGTGAGCTCCTGTACGACATTTG
GAAGCGCGAGTACGCATATGAAGGGGAGGAAGAGCAGCGCAAATGGGACG
AGGTCATCAACTTCACCTTGAAGGTCGGCTCCCCCCTCTTCTATATGCAT
ATCCTGGCGAACTGCATCCGTCGGCCGATCATCGTTATCAGCGATGATCA
CCCTCGGGAGGCAGATCTAAGCTACATCGACTCAGTTAAACTTCAGTCCG
TGTGA
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