mRNA_A-nodosum_M_contig99.38.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig99.38.1
Unique NamemRNA_A-nodosum_M_contig99.38.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig99.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig99contigA-nodosum_M_contig99:366589..367133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size545
Hectar predicted targeting categoryother localisation
Exons1
Cds size534
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870524.537528-CDS-A-nodosum_M_contig99:366588..3671221680870524.537528-CDS-A-nodosum_M_contig99:366588..367122Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig99 366589..367122 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870524.549412-UTR-A-nodosum_M_contig99:367122..3671331680870524.549412-UTR-A-nodosum_M_contig99:367122..367133Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig99 367123..367133 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig99.38.1prot_A-nodosum_M_contig99.38.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig99 366589..367122 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig99.38.1

>prot_A-nodosum_M_contig99.38.1 ID=prot_A-nodosum_M_contig99.38.1|Name=mRNA_A-nodosum_M_contig99.38.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=178bp
MLARAPASPAQGLHHHGPRYFNFPYFCTMCGLPIRYVVCYDRYDRKSGMK
ALLHKREEGNEQNRACPGVSWTKSGTSGRFGGGFRLDKTGHKTKVDKTGA
WCMADKLGHFPYFVDITGHTRVFSCQNWAYSVNPPLVSAPVHPSSMPCHV
FCCLKKNQTTPRPSEHPPVMGGKMTVV*
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mRNA from alignment at A-nodosum_M_contig99:366589..367133-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig99.38.1 ID=mRNA_A-nodosum_M_contig99.38.1|Name=mRNA_A-nodosum_M_contig99.38.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=545bp|location=Sequence derived from alignment at A-nodosum_M_contig99:366589..367133- (Ascophyllum nodosum dioecious)
TGGACGGCTGGATGCTGGCTCGCGCGCCGGCTTCACCAGCTCAAGGCCTC
CACCACCATGGACCTCGGTATTTCAATTTTCCTTATTTTTGTACGATGTG
TGGCCTGCCAATCCGGTACGTGGTCTGCTACGACAGGTACGACAGGAAAT
CGGGAATGAAAGCGTTATTACACAAAAGAGAAGAAGGGAATGAACAAAAT
CGGGCATGCCCGGGTGTTTCTTGGACAAAATCGGGCACAAGTGGAAGGTT
CGGGGGAGGTTTCCGTTTGGACAAAACCGGGCACAAAACAAAAGTGGACA
AAACGGGTGCATGGTGCATGGCGGACAAACTCGGGCACTTCCCATACTTC
GTAGATATAACCGGGCATACCCGGGTGTTCAGTTGCCAAAATTGGGCATA
CTCTGTTAATCCCCCTCTTGTGAGCGCTCCCGTTCACCCATCATCCATGC
CATGTCATGTGTTCTGTTGTTTAAAGAAAAATCAGACCACACCTAGACCT
TCTGAGCATCCCCCGGTTATGGGGGGAAAAATGACTGTTGTTTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig99:366589..367133-

>mRNA_A-nodosum_M_contig99.38.1 ID=mRNA_A-nodosum_M_contig99.38.1|Name=mRNA_A-nodosum_M_contig99.38.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at A-nodosum_M_contig99:366589..367133- (Ascophyllum nodosum dioecious)
ATGCTGGCTCGCGCGCCGGCTTCACCAGCTCAAGGCCTCCACCACCATGG
ACCTCGGTATTTCAATTTTCCTTATTTTTGTACGATGTGTGGCCTGCCAA
TCCGGTACGTGGTCTGCTACGACAGGTACGACAGGAAATCGGGAATGAAA
GCGTTATTACACAAAAGAGAAGAAGGGAATGAACAAAATCGGGCATGCCC
GGGTGTTTCTTGGACAAAATCGGGCACAAGTGGAAGGTTCGGGGGAGGTT
TCCGTTTGGACAAAACCGGGCACAAAACAAAAGTGGACAAAACGGGTGCA
TGGTGCATGGCGGACAAACTCGGGCACTTCCCATACTTCGTAGATATAAC
CGGGCATACCCGGGTGTTCAGTTGCCAAAATTGGGCATACTCTGTTAATC
CCCCTCTTGTGAGCGCTCCCGTTCACCCATCATCCATGCCATGTCATGTG
TTCTGTTGTTTAAAGAAAAATCAGACCACACCTAGACCTTCTGAGCATCC
CCCGGTTATGGGGGGAAAAATGACTGTTGTTTAA
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