mRNA_A-nodosum_M_contig9885.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9885.1.1
Unique NamemRNA_A-nodosum_M_contig9885.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9885.1.1 vs. uniprot
Match: A0A6H5JJG6_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG6_9PHAE)

HSP 1 Score: 305 bits (781), Expect = 1.210e-95
Identity = 150/203 (73.89%), Postives = 166/203 (81.77%), Query Frame = 1 
Query:    1 ENHDGTDKQYVVLGMKDGGHLCSCRTLQELGLCCRHFWAAMRLSRKYKFHVGILNQHWLAEQGRKPTSEWPEGAKPIWTVAKNHTPLTE-EVQALLVSTV-------------GDGVRLKWNADNTTIESSLMKLKETGPTPQDRRYLYVDCLKEATAAVGLGVETVPPDALRALVQQFVQGVNMAGRIGSRTGISVGNPHVV 567
            ENHDGTDK+Y+VLGM DG HLCSCRTLQELGLCCRHFWAAMRLSR+YKFHVGILNQHWLAEQGRKPTSEWPEGAKP W VA NH  L+E E QA LV+T              G G  ++W+A N TIESSL++LKETGPTPQDRR+LYVDCLKEATAAV LGVETVPP+ALRALV+QF QGV+ A RIGS  G++V NP VV
Sbjct:  638 ENHDGTDKRYIVLGMTDGSHLCSCRTLQELGLCCRHFWAAMRLSRRYKFHVGILNQHWLAEQGRKPTSEWPEGAKPTWAVALNHKALSEGEKQAPLVATGRLQCATEGDEGGGGAGAGVQWDAGNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVV 840
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BLAST of mRNA_A-nodosum_M_contig9885.1.1 vs. uniprot
Match: D7FLA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLA8_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 2.610e-48
Identity = 91/143 (63.64%), Postives = 107/143 (74.83%), Query Frame = 1 
Query:  181 EQGRKPTSEWPEGAKPIWTVAKNHTPLTE-EVQALLVSTV-------------GDGVRLKWNADNTTIESSLMKLKETGPTPQDRRYLYVDCLKEATAAVGLGVETVPPDALRALVQQFVQGVNMAGRIGSRTGISVGNPHVV 567
            ++GR+ T+EWPEGAKP W V KNH  L+E E QA LV+T              G G  ++W+A N TIESSL++LKETGPTPQDRR+LYVDCLKEATAAV LGVETVPP+ALRALVQQF QGV+ A RIGS  G++V NP VV
Sbjct:  253 QRGRRATTEWPEGAKPKWAVTKNHEALSEGEQQAPLVATGRLQCATDGDKGGGGAGGGVQWDAGNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVQQFKQGVHQASRIGSSAGLAVANPAVV 395
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BLAST of mRNA_A-nodosum_M_contig9885.1.1 vs. uniprot
Match: A0A6H5JCK5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK5_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 9.020e-38
Identity = 66/90 (73.33%), Postives = 77/90 (85.56%), Query Frame = 1 
Query:  298 GDGVRLKWNADNTTIESSLMKLKETGPTPQDRRYLYVDCLKEATAAVGLGVETVPPDALRALVQQFVQGVNMAGRIGSRTGISVGNPHVV 567
            G G  ++W+A N TIESSL++LKETGPTPQDRR+LYVDCLKEATAAV LGVETVPP+ALRALV+QF QGV+ A RIGS  G++V NP VV
Sbjct:    6 GAGAGVQWDAGNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVV 95
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BLAST of mRNA_A-nodosum_M_contig9885.1.1 vs. uniprot
Match: A0A6H5JBU5_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBU5_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 3.130e-37
Identity = 73/146 (50.00%), Postives = 96/146 (65.75%), Query Frame = 1 
Query:    1 ENHDGTDKQYVVLGMKDGGHLCSCRTLQELGLCCRHFWAAMRLSRKYKFHVGILNQHWLAEQGRKPTSEWPEGAKPIWTVAKNHTPLTEEVQALL-VSTVGDGVRLKWNA--DNTTIESSLMKLKETGPTPQDRRYLYVDCLKEAT 429
            E+  G   +Y+V  M+DG H+CSCRTLQELGLCCRHFW AMRLS K+KFHVGILN+HWL EQG +    WP   K  W VA  ++  +++ Q     + VGD     W A  +N TIE+ L ++ +TG + QDRR L+V+ LK+ T
Sbjct:  354 ESRYGRVMRYIVCSMQDGSHICSCRTLQELGLCCRHFWQAMRLSPKFKFHVGILNRHWLTEQGLRELEAWPPECKQ-WMVALVNSDASKDDQVRPPTAMVGD----TWQAIPENATIETRLQRVAQTGQSSQDRRLLFVEMLKKTT 494
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BLAST of mRNA_A-nodosum_M_contig9885.1.1 vs. uniprot
Match: A0A6H5JMX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMX3_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 7.200e-35
Identity = 75/143 (52.45%), Postives = 95/143 (66.43%), Query Frame = 1 
Query:  160 LNQHWLAEQGRKPTSEWPEGAKPIWTVAKNHTPLTEEVQALLVSTVGD------GVRLKWNADNTTIESSLMKLKETGPTPQDRRYLYVDCLKEATAAVGLGVETVPPDALRALVQQFVQ-GVNMAGRIGSRTGISVGNPHVV 567
            L +    E+  K    +P+  +  W   +    L+  +Q    +T GD      G  ++W+A N TIESSL++LKETGPTPQDRR+LYVDCLKEATAAV LGVETVPP+ALRALV+QF Q GV+ A RIGS  G++V NP VV
Sbjct:   60 LTESGFEEEYAKLIETFPKAKEHFWAAMR----LSRRLQC---ATEGDEGGGGAGAGVQWDAGNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQXGVHQASRIGSSAGLAVANPAVV 195
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BLAST of mRNA_A-nodosum_M_contig9885.1.1 vs. uniprot
Match: A0A6H5JUZ2_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ2_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 3.310e-32
Identity = 76/187 (40.64%), Postives = 102/187 (54.55%), Query Frame = 1 
Query:    1 ENHDGTDKQYVVLGMKDGGHLCSCRTLQELGLCCRHFWAAMRLSRKYKFHVGILNQHWLAEQGR-KPTSEWPEGAKPIWTVAKNHTPLTEEVQALLVSTVGDGVRL---KWNA---DNTTIESSLMKLKETGPTPQDRRYLYVDCLKEATAAVGLGVETVPPDALRALVQQFVQGVNM-AGRIGSRT 537
            E  DG    Y+VL   DG HLC CRTLQ LGL CRH WAAM  S +++FH      HWL E+ R  P  +WP+ A+P W V+ ++     EV        G+GV     +W +    + T+++ L+ LKE GPT QDR+ LY D  K+   A  +  +   P    ALV QF+  VNM AG +G+ T
Sbjct:  596 EQRDGKAFDYLVLLFSDGSHLCQCRTLQTLGLFCRHVWAAMMHSPRFRFH------HWLTEKARGTPQQDWPDVARPRWVVSXSNRHAAGEVDGAAGEGEGEGVGGCGGRWKSFVGSSQTVQTVLLDLKEKGPTYQDRKVLYADVTKKLGQAASILSDRFSPTVAVALVDQFLTMVNMQAGGVGTTT 776
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BLAST of mRNA_A-nodosum_M_contig9885.1.1 vs. uniprot
Match: D8LU83_ECTSI (SWIM-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU83_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 1.980e-30
Identity = 64/148 (43.24%), Postives = 86/148 (58.11%), Query Frame = 1 
Query:    1 ENHDGTDKQYVVLGMKDGGHLCSCRTLQELGLCCRHFWAAMRLSRKYKFHVGILNQHWLAEQGR-KPTSEWPEGAKPIWTVAKNHTPLTEEVQALLVSTVGDGV---RLKWNA---DNTTIESSLMKLKETGPTPQDRRYLYVDCLKE 423
            E  D     Y+VL   DG HLC CRTLQ L L CRH WAAM  S +++FHVG+L++HWL E+ R  P  +WP+ A+P W V+  H     EV        G+GV     +W +    + T+++ L+ LKE GPT QDR+ LY D  K+
Sbjct:  497 EQRDDKAFDYLVLLFSDGSHLCQCRTLQTLRLFCRHVWAAMMYSPRFRFHVGLLHEHWLTEKARGTPQQDWPDVARPRWVVSNRHA--AREVDGAAGEGEGEGVGGCSGRWKSFVGSSQTVQTVLLDLKEKGPTDQDRQVLYADVTKK 642
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BLAST of mRNA_A-nodosum_M_contig9885.1.1 vs. uniprot
Match: A0A6H5JFD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFD7_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.990e-26
Identity = 67/176 (38.07%), Postives = 95/176 (53.98%), Query Frame = 1 
Query:   16 TDKQYVVLGMKDGGHLCSCRTLQELGLCCRHFWAAMRLSRKYKFHVGILNQHWLAEQGR-KPTSEWPEGAKPIWTVAKNHTPLTEEVQALLVSTVGDGVRLKWNADNTTIESSLMKLKETGPTPQDRRYLYVDCLKEATAAVGLGVETVPPDALRALVQQFVQGVNM-AGRIGSRT 537
            T   Y+VL   D  HLC CRTLQ LGL CR  WAAM  S +++FHVG+L++HWL E+ R  P  +WP+ A+P W   +  T   E  +       G G        + T+++ ++ LKE GPT QDR+ +Y +  K+   A  +  +   P    A V QF+  VN+ AG  G+ T
Sbjct:  296 TTFDYLVLLFSDVSHLCQCRTLQTLGLFCRQVWAAMMHSPRFRFHVGLLHEHWLTEKARGTPLHDWPDVARPRW---EKWTGRRERERD------GGG-----GXSSQTVQTVVLDLKEKGPTDQDRQVVYANVTKKLGQAASILSDKFSPTVAVARVDQFLATVNVQAGGAGATT 457
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BLAST of mRNA_A-nodosum_M_contig9885.1.1 vs. uniprot
Match: A0A6H5JNB0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNB0_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 5.710e-25
Identity = 57/156 (36.54%), Postives = 80/156 (51.28%), Query Frame = 1 
Query:   10 DGTDKQYVVLGMKDGGHLCSCRTLQELGLCCRHFWAAMRLSRKYKFHVGILNQHWLAEQGR-KPTSEWPEGAKPIWTVAKNHTPLTEEVQALLVSTVGDGVRLKWNA-----------------DNTTIESSLMKLKETGPTPQDRRYLYVDCLKE 423
            DG    Y+VL   DG HLC CRT Q LGL CRH WAAM  S +++FHVG+L+QHWL E+ R  P  +WP+ A+P + V  +    T   +       G+                          + T++++L+ LKE  PT Q+R+ LY D  K+
Sbjct:  567 DGRTFDYLVLLFSDGSHLCQCRTFQTLGLFCRHVWAAMMYSPRFRFHVGLLHQHWLTEKARGTPLQDWPDVARPRFVVISDRHASTAGAKERFEGAAGEXXXXXXXXXXXXXXXXXXXXXXXXXSSQTVQAALLDLKEKEPTDQERQVLYADVTKK 722
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BLAST of mRNA_A-nodosum_M_contig9885.1.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 2.970e-24
Identity = 61/141 (43.26%), Postives = 83/141 (58.87%), Query Frame = 1 
Query:  154 GILNQHWLAEQGRKPTSEWPEGAKPIWTVAKNHTPLTEEVQALLVSTV-GDGVRLKWNA--DNTTIESSLMKLKETGPTPQDRRYLYVDCLKEATAAVGLGVETVPPDALRALVQQFVQGVNMAGRIGSRTGISVGNPHVV 567
            G + +HWL EQG +    WP   KP W VA  H+  +++ Q    + V GD     W A  ++ TIE+ L ++ +TG + QDRR LYV+ LK+ATAAV  GV+ VPPD +RA+VQ F   +N A  I S  G  +GNP  V
Sbjct:  412 GRVMRHWLTEQGLRELEAWPPECKPQWMVALVHSDASKDDQVRPPTVVVGD----TWQAIPEDATIETRLQRVAQTGQSCQDRRLLYVEMLKKATAAVSSGVQLVPPDTMRAIVQTFESSMNAAAMISSGQGAVLGNPQAV 548
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9885.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5JJG6_9PHAE1.210e-9573.89SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
D7FLA8_ECTSI2.610e-4863.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCK5_9PHAE9.020e-3873.33Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBU5_9PHAE3.130e-3750.00SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JMX3_9PHAE7.200e-3552.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUZ2_9PHAE3.310e-3240.64SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LU83_ECTSI1.980e-3043.24SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JFD7_9PHAE1.990e-2638.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNB0_9PHAE5.710e-2536.54SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JWW3_9PHAE2.970e-2443.26MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9885contigA-nodosum_M_contig9885:2000..2566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LU83
Preferred nameFHY3
PFAMsFAR1,MULE,SWIM
Model size567
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0007154,GO:0007165,GO:0007602,GO:0007623,GO:0008150,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009585,GO:0009605,GO:0009628,GO:0009639,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010017,GO:0010018,GO:0010218,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0023052,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0042752,GO:0042753,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0048511,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051606,GO:0051716,GO:0060255,GO:0065007,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071490,GO:0080090,GO:0104004,GO:0140110,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons1
Evalue3.25e-31
EggNOG OGs2CMBY@1|root,2QPXR@2759|Eukaryota
DescriptionMULE transposase domain
Cds size567
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870523.228855-CDS-A-nodosum_M_contig9885:1999..25661680870523.228855-CDS-A-nodosum_M_contig9885:1999..2566Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9885 2000..2566 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9885.1.1prot_A-nodosum_M_contig9885.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9885 2000..2566 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9885.1.1

>prot_A-nodosum_M_contig9885.1.1 ID=prot_A-nodosum_M_contig9885.1.1|Name=mRNA_A-nodosum_M_contig9885.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=189bp
ENHDGTDKQYVVLGMKDGGHLCSCRTLQELGLCCRHFWAAMRLSRKYKFH
VGILNQHWLAEQGRKPTSEWPEGAKPIWTVAKNHTPLTEEVQALLVSTVG
DGVRLKWNADNTTIESSLMKLKETGPTPQDRRYLYVDCLKEATAAVGLGV
ETVPPDALRALVQQFVQGVNMAGRIGSRTGISVGNPHVV
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mRNA from alignment at A-nodosum_M_contig9885:2000..2566-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9885.1.1 ID=mRNA_A-nodosum_M_contig9885.1.1|Name=mRNA_A-nodosum_M_contig9885.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=567bp|location=Sequence derived from alignment at A-nodosum_M_contig9885:2000..2566- (Ascophyllum nodosum dioecious)
GAAAACCACGACGGCACAGACAAACAATACGTAGTCCTTGGCATGAAGGA
TGGTGGTCATCTCTGCTCGTGTCGCACTCTGCAAGAACTAGGCCTTTGCT
GCCGGCACTTTTGGGCGGCGATGCGCCTTAGCCGCAAGTACAAGTTCCAC
GTTGGCATTTTGAACCAGCACTGGCTGGCAGAGCAGGGGCGGAAACCCAC
GAGTGAGTGGCCAGAGGGGGCCAAGCCCATTTGGACTGTAGCGAAGAACC
ACACCCCCTTAACTGAGGAAGTACAGGCCCTGCTGGTTTCGACCGTGGGC
GATGGGGTAAGGTTGAAGTGGAATGCTGATAACACTACCATTGAGTCCTC
TCTAATGAAGTTGAAGGAGACAGGGCCAACCCCCCAGGACCGCCGGTACC
TGTACGTAGACTGCCTGAAGGAGGCCACCGCAGCTGTGGGTTTAGGTGTA
GAGACTGTACCTCCCGACGCGCTACGGGCGCTAGTACAACAATTCGTGCA
AGGGGTGAACATGGCGGGGAGGATAGGGTCGAGGACAGGGATTTCGGTGG
GAAATCCGCATGTAGTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9885:2000..2566-

>mRNA_A-nodosum_M_contig9885.1.1 ID=mRNA_A-nodosum_M_contig9885.1.1|Name=mRNA_A-nodosum_M_contig9885.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=567bp|location=Sequence derived from alignment at A-nodosum_M_contig9885:2000..2566- (Ascophyllum nodosum dioecious)
GAAAACCACGACGGCACAGACAAACAATACGTAGTCCTTGGCATGAAGGA
TGGTGGTCATCTCTGCTCGTGTCGCACTCTGCAAGAACTAGGCCTTTGCT
GCCGGCACTTTTGGGCGGCGATGCGCCTTAGCCGCAAGTACAAGTTCCAC
GTTGGCATTTTGAACCAGCACTGGCTGGCAGAGCAGGGGCGGAAACCCAC
GAGTGAGTGGCCAGAGGGGGCCAAGCCCATTTGGACTGTAGCGAAGAACC
ACACCCCCTTAACTGAGGAAGTACAGGCCCTGCTGGTTTCGACCGTGGGC
GATGGGGTAAGGTTGAAGTGGAATGCTGATAACACTACCATTGAGTCCTC
TCTAATGAAGTTGAAGGAGACAGGGCCAACCCCCCAGGACCGCCGGTACC
TGTACGTAGACTGCCTGAAGGAGGCCACCGCAGCTGTGGGTTTAGGTGTA
GAGACTGTACCTCCCGACGCGCTACGGGCGCTAGTACAACAATTCGTGCA
AGGGGTGAACATGGCGGGGAGGATAGGGTCGAGGACAGGGATTTCGGTGG
GAAATCCGCATGTAGTC
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