mRNA_A-nodosum_M_contig9874.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9874.1.1
Unique NamemRNA_A-nodosum_M_contig9874.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig9874.1.1 vs. uniprot
Match: D7FHZ7_ECTSI (Metallophos domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ7_ECTSI)

HSP 1 Score: 264 bits (674), Expect = 7.020e-78
Identity = 117/144 (81.25%), Postives = 128/144 (88.89%), Query Frame = 2 
Query: 1502 SNATYLEDSSARVEGLKFYGTPWTNSSHMGFSCKGTDLEGVWSAIPEDVDVLLTHMPPYNVLDLAFDLGTTSRNDPCSVCGERHRSYAHWGSWSLTDRVARLKPKVHVFGHVHNSHGIVRRDETIYINAAQDLNPQPIFLDIWV 1933
            SNATYLEDS   VEGLKFYGTPWTNSSHMGFSC+G  LEGVWSAIPE VD+LLTHMPP+N LDLAFD G+ ++ DPC VCGE HRS+AHWGSWSLTDRVA LKPKVHVFGHVHNSHGI+R+D+T+YINAAQD N QPIF DIWV
Sbjct:   78 SNATYLEDSETTVEGLKFYGTPWTNSSHMGFSCRGAQLEGVWSAIPEGVDILLTHMPPFNRLDLAFDRGSHAKADPCPVCGETHRSFAHWGSWSLTDRVAELKPKVHVFGHVHNSHGIIRKDDTVYINAAQDENQQPIFFDIWV 221
[Close]
BLAST of mRNA_A-nodosum_M_contig9874.1.1 vs. uniprot
Match: A0A6H5JJZ4_9PHAE (Metallophos domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJZ4_9PHAE)

HSP 1 Score: 266 bits (679), Expect = 3.190e-77
Identity = 118/144 (81.94%), Postives = 128/144 (88.89%), Query Frame = 2 
Query: 1502 SNATYLEDSSARVEGLKFYGTPWTNSSHMGFSCKGTDLEGVWSAIPEDVDVLLTHMPPYNVLDLAFDLGTTSRNDPCSVCGERHRSYAHWGSWSLTDRVARLKPKVHVFGHVHNSHGIVRRDETIYINAAQDLNPQPIFLDIWV 1933
            SNATYLEDS   VEGLKFYGTPWTNSSHMGFSC+G  LEGVWSAIPE VD+LLTHMPP+N LDLAFD G+ ++ DPC VCGE HRS+AHWGSWSLTDRVA LKPKVHVFGHVHNSHGI+R+DET+YINAAQD N QPIF DIWV
Sbjct:  174 SNATYLEDSETTVEGLKFYGTPWTNSSHMGFSCRGAQLEGVWSAIPEGVDILLTHMPPFNRLDLAFDRGSNAKADPCPVCGETHRSFAHWGSWSLTDRVAELKPKVHVFGHVHNSHGIIRKDETVYINAAQDENQQPIFFDIWV 317
[Close]
BLAST of mRNA_A-nodosum_M_contig9874.1.1 vs. uniprot
Match: A0A7S4MMV8_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MMV8_9EUKA)

HSP 1 Score: 157 bits (398), Expect = 1.030e-39
Identity = 68/132 (51.52%), Postives = 89/132 (67.42%), Query Frame = 2 
Query: 1505 NATYLEDSSARVEGLKFYGTPWTNSSHMGFSCKGTDLEGVWSAIPEDVDVLLTHMPPYNVLDLAFDLGTTSRNDPCSVCGERHRSYAHWGSWSLTDRVARLKPKVHVFGHVHNSHGIVRRDETIYINAAQDL 1900
            N  YL+DSS ++ G+KFYG+PWT SS MGFSC   +++  W  IP   D+L+THMPP+N+LDLAF       N  CS CG+ H  Y HWGS SL +RV  +KPK H+FGHVH+  G  R  +T ++N+A DL
Sbjct:  104 NCVYLQDSSVKLMGIKFYGSPWTTSSRMGFSCPRAEIKKKWKKIPRSTDILITHMPPFNILDLAFSSKALD-NSTCSTCGKSHERYRHWGSNSLLERVETVKPKFHLFGHVHDDPGFKRVGDTTFVNSAVDL 234
[Close]
BLAST of mRNA_A-nodosum_M_contig9874.1.1 vs. uniprot
Match: A0A814A372_9BILA (Hypothetical protein n=3 Tax=Rotaria sordida TaxID=392033 RepID=A0A814A372_9BILA)

HSP 1 Score: 122 bits (307), Expect = 2.150e-27
Identity = 62/149 (41.61%), Postives = 88/149 (59.06%), Query Frame = 2 
Query: 1502 SNATYLEDSSARVEGLKFYGTPWTNSSHMGFSCKGTDLEGVWSAIPEDVDVLLTHMPPYNVLDLAFDLGTTSRNDPCSVCGER-HRSYAHWGSWSLTDRVA-RLKPKVHVFGHVHNSHGIV---RRDETIYINAAQDLNPQPIFLDIWV 1933
            SN+ YL+D   +VEG+  YG+ W    H    C+       WS+IP D+D+L+THMPP  +LDLAF     +  +PCS+C    H SY HWGS SL   +  R+KP++H FGHVH+ +G       + T++INAA DL  Q   L+ ++
Sbjct:  112 SNSIYLKDDLIQVEGITIYGSSW----HFNERCRAK-----WSSIPSDIDILMTHMPPKFILDLAFQPRKVASTEPCSICNNTVHGSYGHWGSKSLIKEIRQRIKPRIHCFGHVHDDNGYKYDQHENGTLFINAAADLTRQCFKLNFYL 251
[Close]
BLAST of mRNA_A-nodosum_M_contig9874.1.1 vs. uniprot
Match: A0A817W8Q9_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817W8Q9_9BILA)

HSP 1 Score: 117 bits (294), Expect = 1.080e-26
Identity = 58/149 (38.93%), Postives = 86/149 (57.72%), Query Frame = 2 
Query: 1502 SNATYLEDSSARVEGLKFYGTPWTNSSHMGFSCKGTDLEGVWSAIPEDVDVLLTHMPPYNVLDLAFDLGTTSRNDPCSVCGER-HRSYAHWGSWSLTDRVA-RLKPKVHVFGHVHNSHGIV---RRDETIYINAAQDLNPQPIFLDIWV 1933
            +N  YL+D   +VEG+  YG+PW  + H             W +IP ++D+L+TH+PP  +LDLAF     +  +PCS+C    H SY HWGS SL   +  R++P++H FGHVH+ +G        ET++INAA DL  Q   L+ ++
Sbjct:   23 TNCIYLKDELIQVEGITIYGSPWPFNEHYRTK---------WLSIPSNIDILMTHIPPKFILDLAFQPKKVASTEPCSMCNNTVHGSYGHWGSKSLIKEIRERIQPRIHCFGHVHDDNGYKYDQHESETLFINAATDLTGQVFKLNFYL 162
[Close]
BLAST of mRNA_A-nodosum_M_contig9874.1.1 vs. uniprot
Match: A0A817R4F3_9BILA (Hypothetical protein n=6 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817R4F3_9BILA)

HSP 1 Score: 119 bits (297), Expect = 4.580e-26
Identity = 58/149 (38.93%), Postives = 87/149 (58.39%), Query Frame = 2 
Query: 1502 SNATYLEDSSARVEGLKFYGTPWTNSSHMGFSCKGTDLEGVWSAIPEDVDVLLTHMPPYNVLDLAFDLGTTSRNDPCSVCGER-HRSYAHWGSWSLTDRVA-RLKPKVHVFGHVHNSHGIV---RRDETIYINAAQDLNPQPIFLDIWV 1933
            +N  YL+D   +VEG+  YG+PW+   H             W +IP ++D+L+TH+PP  +LDLAF     +  +PCS+C +  H SY HWGS SL   +  R++P++H FGHVH+ +G        ET++INAA DL  Q   L+ ++
Sbjct:  112 TNCIYLKDELIQVEGITIYGSPWSFKEHYRTK---------WLSIPSNIDILMTHIPPKFILDLAFQPKKVASTEPCSMCNDTVHGSYGHWGSKSLIKEIRERIQPRIHCFGHVHDDNGYKYDQHESETLFINAATDLTGQVFKLNFYL 251
[Close]
BLAST of mRNA_A-nodosum_M_contig9874.1.1 vs. uniprot
Match: A0A816D1C4_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A816D1C4_ADIRI)

HSP 1 Score: 118 bits (296), Expect = 6.360e-26
Identity = 58/146 (39.73%), Postives = 85/146 (58.22%), Query Frame = 2 
Query: 1502 SNATYLEDSSARVEGLKFYGTPWTNSSHMGFSCKGTDLEGVWSAIPEDVDVLLTHMPPYNVLDLAFDLGTTSRNDPCSVCGER-HRSYAHWGSWSLTDRVA-RLKPKVHVFGHVHNSHGIVRRDETIYINAAQDLNPQPIFLDIWV 1933
            +N  YL+D    VEG+  YG+PW  +               WS+IP+ +DVL+TH+PP  +LDLA+        +PC++C ++ H SY HWGS SL   V  R++P+VH FGHVH+  G    + T++INAA +L  Q   L+ +V
Sbjct:  116 TNCKYLQDELVEVEGITIYGSPWPFTQ---------SYRSKWSSIPDHIDVLMTHVPPQYILDLAYQPKKAPITEPCAMCDDKVHGSYGHWGSRSLKRAVLERIQPRVHCFGHVHDDPGYKYENNTLFINAAANLTHQSFKLNFYV 252
[Close]
BLAST of mRNA_A-nodosum_M_contig9874.1.1 vs. uniprot
Match: A0A8B8DZA7_CRAVI (UPF0046 protein C25E10.12-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8DZA7_CRAVI)

HSP 1 Score: 116 bits (291), Expect = 2.930e-25
Identity = 57/132 (43.18%), Postives = 78/132 (59.09%), Query Frame = 2 
Query: 1514 YLEDSSARVEGLKFYGTPWTNSSHM-----GFSCKGTDLEGVWSAIPEDVDVLLTHMPPYNVLDLAFDLGTTSRNDPCSVCGERHRSYAHWGSWSLTDRVAR-LKPKVHVFGHVHNSHGIVRRDETIYINAA 1891
            YL+DS    +G+KFYG+PWT SS        F+  G  L   W A+  D DVL+TH PPY VLD +  LG T     C  CG+ H    H G +SL + V + ++PK+H+FGH+H S G+  +D+ I+ NAA
Sbjct:  115 YLQDSFTVCDGVKFYGSPWTISSRKIKTSKAFTAAGEVLRERWGAVDGDTDVLITHTPPYGVLDYSRHLGDTPPKAVCQFCGKGHPDRGHAGCYSLREAVLQTIRPKMHLFGHLHGSAGLTEQDDIIFSNAA 246
[Close]
BLAST of mRNA_A-nodosum_M_contig9874.1.1 vs. uniprot
Match: A0A352N9D7_9BACT (Metallophosphoesterase n=2 Tax=Lentisphaerae TaxID=256845 RepID=A0A352N9D7_9BACT)

HSP 1 Score: 114 bits (284), Expect = 1.110e-24
Identity = 55/129 (42.64%), Postives = 75/129 (58.14%), Query Frame = 2 
Query: 1505 NATYLEDSSARVEGLKFYGTPWTNSSHMGFSCKGTDLEGVWSAIPEDVDVLLTHMPPYNVLDLAFDLGTTSRNDPCSVCGERHRSYAHWGSWSLTDRVARLKPKVHVFGHVHNSHGIVRRDETIYINAA 1891
            NA YL+D  A V GL FYGTPW+ +S   F  +   L   W  IPE++DVL+TH PPY +LD                   R  +  H G   LT+ + R++PK+HVFGH+H S+GI+R+D T+Y NA+
Sbjct:   85 NAIYLQDKCANVMGLSFYGTPWSPASGWSFQLEDDRLNEKWRKIPENIDVLVTHCPPYGILD-------------------RSTTGIHLGCPLLTENLQRIRPKLHVFGHIHESYGILRKDGTLYANAS 194
[Close]
BLAST of mRNA_A-nodosum_M_contig9874.1.1 vs. uniprot
Match: A0A820G6N3_9BILA (Hypothetical protein n=3 Tax=Rotaria TaxID=231623 RepID=A0A820G6N3_9BILA)

HSP 1 Score: 114 bits (285), Expect = 1.630e-24
Identity = 59/148 (39.86%), Postives = 85/148 (57.43%), Query Frame = 2 
Query: 1502 SNATYLEDSSARVEGLKFYGTPWTNSSHMGFSCKGTDLEGVWSAIPEDVDVLLTHMPPYNVLDLAFDLGTTSRNDPCSVCGER-HRSYAHWGSWSLTDRVAR-LKPKVHVFGHVHNSHGIV---RRDETIYINAAQDLNPQPIFLDIW 1930
            +N TYL+    +VEG+  YG+PW  S +  +  K       WS+IP D+D+L+TH+PP  +LDLAF        DPCS+C +  H  Y HWGS SL   + R ++P++H FGHVH+  G       + T++INAA  L  Q   L+ +
Sbjct:  112 TNCTYLDGELIQVEGITIYGSPW--SFNENYRAK-------WSSIPSDIDILMTHIPPKFILDLAFQPKKAVSTDPCSICDDAVHGYYGHWGSRSLIKEIRRRIQPRIHCFGHVHDDQGYKYDQHENGTLFINAAAYLTSQAFKLNFY 250
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9874.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHZ7_ECTSI7.020e-7881.25Metallophos domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JJZ4_9PHAE3.190e-7781.94Metallophos domain-containing protein n=1 Tax=Ecto... [more]
A0A7S4MMV8_9EUKA1.030e-3951.52Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A814A372_9BILA2.150e-2741.61Hypothetical protein n=3 Tax=Rotaria sordida TaxID... [more]
A0A817W8Q9_9BILA1.080e-2638.93Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
A0A817R4F3_9BILA4.580e-2638.93Hypothetical protein n=6 Tax=Rotaria sp. Silwood2 ... [more]
A0A816D1C4_ADIRI6.360e-2639.73Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
A0A8B8DZA7_CRAVI2.930e-2543.18UPF0046 protein C25E10.12-like n=1 Tax=Crassostrea... [more]
A0A352N9D7_9BACT1.110e-2442.64Metallophosphoesterase n=2 Tax=Lentisphaerae TaxID... [more]
A0A820G6N3_9BILA1.630e-2439.86Hypothetical protein n=3 Tax=Rotaria TaxID=231623 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9874contigA-nodosum_M_contig9874:3621..7861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FHZ7
PFAMsMetallophos
Model size3169
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue3.63e-86
EggNOG OGsKOG3947@1|root,KOG3947@2759|Eukaryota
DescriptionCalcineurin-like phosphoesterase
Cds size933
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9874.1.1prot_A-nodosum_M_contig9874.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9874 4624..6628 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870522.5460367-UTR-A-nodosum_M_contig9874:3620..46231680870522.5460367-UTR-A-nodosum_M_contig9874:3620..4623Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9874 3621..4623 +
1680870522.6271892-UTR-A-nodosum_M_contig9874:6628..78611680870522.6271892-UTR-A-nodosum_M_contig9874:6628..7861Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9874 6629..7861 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870522.5676725-CDS-A-nodosum_M_contig9874:4623..52081680870522.5676725-CDS-A-nodosum_M_contig9874:4623..5208Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9874 4624..5208 +
1680870522.580358-CDS-A-nodosum_M_contig9874:5562..57321680870522.580358-CDS-A-nodosum_M_contig9874:5562..5732Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9874 5563..5732 +
1680870522.5956073-CDS-A-nodosum_M_contig9874:6114..61721680870522.5956073-CDS-A-nodosum_M_contig9874:6114..6172Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9874 6115..6172 +
1680870522.6082087-CDS-A-nodosum_M_contig9874:6508..66281680870522.6082087-CDS-A-nodosum_M_contig9874:6508..6628Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9874 6509..6628 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9874.1.1

>prot_A-nodosum_M_contig9874.1.1 ID=prot_A-nodosum_M_contig9874.1.1|Name=mRNA_A-nodosum_M_contig9874.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=311bp
MIFFSNHARRWSRMGRLEHSNTGTTRKTLETTETAYHPRLYLYRSKISKI
YFHQQRPSRGSQPASQRLVRDSTGVYLPRRRWPYGERRIGVVVEHITARA
EWNANSQTPAAALPSPVHQGCKSTHRGLAQEHAKERDVGVKGFCRPVLHA
LTLRFCFHFIFRLSTCSNATYLEDSSARVEGLKFYGTPWTNSSHMGFSCK
GTDLEGVWSAIPEDVDVLLTHMPPYNVLDLAFDLGTTSRNDPCSVCGERH
RSYAHWGSWSLTDRVARLKPKVHVFGHVHNSHGIVRRDETIYINAAQDLN
PQPIFLDIWV*
back to top

mRNA from alignment at A-nodosum_M_contig9874:3621..7861+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9874.1.1 ID=mRNA_A-nodosum_M_contig9874.1.1|Name=mRNA_A-nodosum_M_contig9874.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4241bp|location=Sequence derived from alignment at A-nodosum_M_contig9874:3621..7861+ (Ascophyllum nodosum dioecious)
CAGCTGACGCGGTCAGTGTGAGGGAGTGTGAGTGAGTCTGCAGTCGGTCA
AAAGAGTGTACAAAATTTGACACAGTAGGTTGCACTGGCGCCAACTTCAC
CGTCCGAACCTTTATTCAGTATTGCGGGGACGAAATCACGAGCGCGCCTT
ACCGGCACGCTGCGACCTGGCGCTCGATATAGCTTGGATAATATTTCGAA
ATAAAGGGTAGTTTTTAACTTCCCCGAACACTCTTATTCGTTTAACTTCC
GCTGCGCCGCTCGCGCGGAACGTGCAGACGGAGATATTCTCGTCCACTGC
GGAGACTTTTCCACGAAGCTCTACCAGCGCGACTTTGAGGCCGTCGTGGA
GGACTTCGATCGATTCCTCGGGTCCTTAGGGGCACAGACACAAGGTAAAT
GGAGAGGTCCCCGTGGCGTCTTGACGCTGCCGCCTTGGTGCCCTACCGGA
CGGGAACTATCTTCCTAGACCTGCGGGACGAGCGCGTAATACTGAGAGCG
GGTTACAGCTGGCTTCCCCATAGATGTCCCATGAGATGACGTTTCTTTAC
GTCCTCGCCCCCCCCACCCCCCCGTTCTGGTTGGGCTGGCGTTTCTTTGC
TCTATACGATATTCGTACGTACGTCTCTTGCTGTCTGTTCTTCACATACG
ATGCCCTTCTCGCGCGTGGCGCCTCAGCTGGTCATCGGCGGCAACCACGA
GATCGCGTTTAACTCCTACACAAGAGAGCAGATACAGCGCCGTTTAAGGT
GACAGACCCGTGGCCCCCGACCGCCTCCACGCTGAGGTTACGGCTGCGAA
CAAGCGCGCGTCCCCCCCCCATTTGGACGAATCTAACTATCGACAGGTCT
CCCTACACACTTAAGCTCCATACCTGGTATGTATTTTATACACCTTGACC
ACCTCCTGATTATGGGAGTGGCTTAGTCCCTGCTGGAAGTCTCTCCCTTG
CTGAGGACGGTGAACGACAATGACAATCGTGAGGTGCATAGTACCCGCAT
GACATGATTTTTTTTTCCAATCATGCGCGTCGATGGTCTCGTATGGGGCG
ACTCGAGCACTCTAATACGGGCACGACTCGCAAAACTCTTGAAACCACAG
AGACTGCATACCACCCCCGACTGTACCTCTACCGGTCAAAGATTTCCAAG
ATTTATTTTCATCAACAAAGACCGTCCCGAGGAAGCCAGCCAGCCAGCCA
AAGACTTGTACGTGACAGTACTGGCGTCTACCTACCCCGCCGTCGCTGGC
CTTACGGCGAGCGGCGCATCGGCGTCGTCGTCGAGCACATCACCGCTCGC
GCTGAGTGGAATGCGAACAGTCAAACCCCGGCAGCAGCGCTCCCTTCACC
AGTGCACCAGGGTTGCAAGAGTACCCACCGCGGTCTTGCGCAGGAGCACG
CGAAGGAGCGAGATGTGGGGGTGAAGGGTTTTTGCCGCCCTGTTTTGCAC
GCCCTCACACTCCGCTTTTGCTTCCATTTTATTTTTCGCCTTTCTACGTG
CAGTAACGCCACCTACCTTGAAGATTCGAGCGCCAGGGTCGAGGGGCTCA
AGTTTTACGGGACTCCTTGGACGAATTCCTCCCACATGGCGAGTTTCGAG
GGGAGGAGGGGGGGGGCAGAGGTTGACCGCCAAATTATCGTGTTTTTTCG
CTCGAACAAACGCGCTGATAAATTGTCCGTGGTTACATGGGTGGAAAAAC
CAAGCAACTTGTGTATGGTGAATGAATCGCGCGTGCCGGCGTACAGCCGC
CGTGATCTTGCCCGCGCCTTTGCTGTCAGTGTTTGGTGCGGTCATCAGTG
GGAACCTCTGACCGATCCAACGCCGCGCGCAGCCAGATCTCGCTTCACCC
AACTACACAATTTAGTCGCCCGAACCATAATGGGCACATTCGCCGTCCCT
CGCTTCCGCCCACTTGTCGACGCCTTTCCCTCGGTACGGCAGGGTTTCAG
CTGCAAAGGAACAGATCTGGAAGGCGTGTGGTCCGCGATTCCAGAAGACG
TTGACGTTCTGTTGACCCATATGCCGCCCTACAACGTGCTCGACCTCGCC
TTCGACCTTGGCACCACGTCGAGGAACGACCCCTGCTCAGTCTGCGGGGA
GAGACACCGGAGGTCATCCCCCGCGCCACAAGAAGCGAAACTTTAGCTAA
TCTCGTTAGTTGGGCAGAAAGTGAAAACCTCCGACTTTACCCGGTGACGT
TCGCGGTGTCAGAGAAGGGCGAAGAGCCCCACCCGTGAAGATCATATTCT
TCGGTCGATGCAGTATTTTGGCCACCTCCGGTAATGAGCTGTGGTGCTCG
TCATCGTAACGGTCACGATGGCTTCACACGCTGCGCTGACAGCACACAGC
AAACACTTTGATGTGCGGGCCATGACAAAAAAATCTCACCCTAAAAAAAC
CGCGCGCCCCTCGCCCGTCTCTGCACCGCACATTTTTATACTCGCCCAAC
AACACTCGGTCGGGGCATGATCGGCTCGTCGTGATGCTGTGCAGCTATGC
TCACTGGGGAAGCTGGAGCCTGACGGACCGTGTCGCGAGGTTGAAACCAA
AGGTGCGTCTTTCCGAACTGTGTGAATATAAGATATCTGATCGTGATCGC
GGATCCATCCGGGCTTCGTCTTTCAACAGACAGCACACAGGAATAACGAT
CGTCGTTTCTTGCAACGAAGGAAACTGGTAAATCAGCTACACAGACAGTT
CCTGCCTGCGGGCTGCACGCGTGACGCCGGTTGCAGATTTGAAAGTTTTT
TTGTGCCTGAGAGCAGACCCCTGGTTGCGGGTTATTTGCCCTCATCCAGA
CCGTCCAGATGGTGTGCACTCTACCGCTCATTACTTTTGGCACGTGCGTT
GTCTCAAGGGGATGTTCGTATGCCGCCCCCCCCCGCAGGTTCACGTCTTT
GGTCACGTGCACAATTCCCACGGAATCGTCAGGAGGGACGAAACGATATA
CATAAACGCCGCGCAAGACTTGAACCCCCAACCCATTTTTTTAGATATTT
GGGTCTGAGCGCGTGCGACAGCGAAGTGGTGGATGTACTGTTGAAAGGGT
ATATATTAATGATACTAGTGTTCTGCTGGAATTTTTGCATCTTTTTGTTG
GAGCCTTCGAATCCGTGCTCTTTAATAACAGCGCTTCGAAAGCGGCTGGA
AAGCAGCCAGATTATTTTGCTCGTAGATATATATAGTATATATAACTGGT
TCGAGCGTAACACCTTTTCAACAAGCGGAAGGTGAATGGGTTACGAGGCT
TGTTAACACCCCCATAAGTTTGTTCAGTCGAGTTGATTAAAAGTTGTTTT
GGTACGCATGATGTTTTTTAAGATCCAGGATGAGCGGTTGATGCCTCGCC
CTTCTAGGGAGAAATATGACGGATCAAGAGGTGCATCAGCCGCCTTTGAA
CGGGGCATTTATTTGCGTGTTTGGTGTTTTTCTCCCTAGTTACCTTGCCA
TGCACATGTCCTAATTTCCGAGTGGTTTTCATCGAGGGCCGGGGCGACGA
GTGTAAACGCCGGGTACCCTTGGGGACAGCAGTGCACGCCTAACGAAAAA
GGAGTCGTTGGTTAGGAGGTCTTTTTTTGTCTAGGGCAAAAAGACGGACA
GCATTTTTAACGAGAAGGAAAATCGCTGAATGAAAGGGGCTTTTCGTCTC
ATCATATCATCGCCGATCACACGAACGGTCATCGTGTTTCCCGGAAAAAC
GATAGAAGAGTATGATAGGCCAGGCAGAAGCGACTCCTCTTGAACCGTTA
ATACACTTCCCTGTTCCGAGCGATGAAGAAAGTTGCGTCGGCAGTTGTTC
AAGAATCTGGTGGACGAGAAGCGAACATCTCTTTACTGGTAGCTCCATGC
TGTGTCCAGTCGTACGTCCTCCTTTAATATTTGATTGTGTCACACTTGCG
ACCGATGGGCCAATCAACCTGCTATTGATGGGTTACCAATACCACTGACT
GAAACGTTGCCATCCTGCCTGTGGTTACGAAGGATCTTCCCATCTCTCCC
CGGTTCTCGCCTAATGAATTTTTATCGCGATGCAAATCCAGGACTCTTAC
AACTAGTCAACGAATGGTTGAATTTTTCTTGCGTTCTCAAGCTTTCCGCT
ACGGAATCATCAAAACCAGTTTTAAAGTCATCATCCTGTCGAGAATCGAA
GTGAAGAATCCGCACTATAATATGAATCATTTTTGATTGGTCGATTGGAT
TCTCACGTTATAAACTGATGCAAAGAATCCAACCCGTGGTT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig9874:3621..7861+

>mRNA_A-nodosum_M_contig9874.1.1 ID=mRNA_A-nodosum_M_contig9874.1.1|Name=mRNA_A-nodosum_M_contig9874.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=933bp|location=Sequence derived from alignment at A-nodosum_M_contig9874:3621..7861+ (Ascophyllum nodosum dioecious)
ATGATTTTTTTTTCCAATCATGCGCGTCGATGGTCTCGTATGGGGCGACT
CGAGCACTCTAATACGGGCACGACTCGCAAAACTCTTGAAACCACAGAGA
CTGCATACCACCCCCGACTGTACCTCTACCGGTCAAAGATTTCCAAGATT
TATTTTCATCAACAAAGACCGTCCCGAGGAAGCCAGCCAGCCAGCCAAAG
ACTTGTACGTGACAGTACTGGCGTCTACCTACCCCGCCGTCGCTGGCCTT
ACGGCGAGCGGCGCATCGGCGTCGTCGTCGAGCACATCACCGCTCGCGCT
GAGTGGAATGCGAACAGTCAAACCCCGGCAGCAGCGCTCCCTTCACCAGT
GCACCAGGGTTGCAAGAGTACCCACCGCGGTCTTGCGCAGGAGCACGCGA
AGGAGCGAGATGTGGGGGTGAAGGGTTTTTGCCGCCCTGTTTTGCACGCC
CTCACACTCCGCTTTTGCTTCCATTTTATTTTTCGCCTTTCTACGTGCAG
TAACGCCACCTACCTTGAAGATTCGAGCGCCAGGGTCGAGGGGCTCAAGT
TTTACGGGACTCCTTGGACGAATTCCTCCCACATGGGTTTCAGCTGCAAA
GGAACAGATCTGGAAGGCGTGTGGTCCGCGATTCCAGAAGACGTTGACGT
TCTGTTGACCCATATGCCGCCCTACAACGTGCTCGACCTCGCCTTCGACC
TTGGCACCACGTCGAGGAACGACCCCTGCTCAGTCTGCGGGGAGAGACAC
CGGAGCTATGCTCACTGGGGAAGCTGGAGCCTGACGGACCGTGTCGCGAG
GTTGAAACCAAAGGTTCACGTCTTTGGTCACGTGCACAATTCCCACGGAA
TCGTCAGGAGGGACGAAACGATATACATAAACGCCGCGCAAGACTTGAAC
CCCCAACCCATTTTTTTAGATATTTGGGTCTGA
back to top