mRNA_A-nodosum_M_contig987.9.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig987.9.1
Unique NamemRNA_A-nodosum_M_contig987.9.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig987.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig987contigA-nodosum_M_contig987:161122..164653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size191
Hectar predicted targeting categoryother localisation
Exons2
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870521.1093636-CDS-A-nodosum_M_contig987:161121..1612311680870521.1093636-CDS-A-nodosum_M_contig987:161121..161231Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig987 161122..161231 +
1680870521.121303-CDS-A-nodosum_M_contig987:164574..1646531680870521.121303-CDS-A-nodosum_M_contig987:164574..164653Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig987 164575..164653 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig987.9.1prot_A-nodosum_M_contig987.9.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig987 161122..164653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig987.9.1

>prot_A-nodosum_M_contig987.9.1 ID=prot_A-nodosum_M_contig987.9.1|Name=mRNA_A-nodosum_M_contig987.9.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=63bp
EGDVIDVCGVSPREIDTESVPMETVRQHKEGIIVGVRRVPREGVAMLLWT
PLKGGKRAGREW*
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mRNA from alignment at A-nodosum_M_contig987:161122..164653+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig987.9.1 ID=mRNA_A-nodosum_M_contig987.9.1|Name=mRNA_A-nodosum_M_contig987.9.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3532bp|location=Sequence derived from alignment at A-nodosum_M_contig987:161122..164653+ (Ascophyllum nodosum dioecious)
GAGGGGGACGTGATCGACGTTTGTGGCGTGTCTCCCCGGGAGATTGATAC
GGAATCCGTACCCATGGAGACGGTTCGCCAGCACAAAGAGGGCATAATTG
TAGGTGTGAGGCAAAATGTCAAATTTATCGTTTCCCCGTTTCAATGATTA
TTCGAGGATTGCCCAGGTACTACTCGTACTGCTATCGGGAATGCTGTTTT
GGCGGCAAACGATTACTCAGGAGTACTAAACTGTCTCGAGTACTGATGAG
ACAGTAACACTCAGTACGTAGAACAGCATGTACTGCTACAGAAATCATTC
GAAAATTCTGCCCTGTACAGACAATACTATCTGTAGTATTTACTTGTCAC
CAAGATATTGGGACTTGACATTGAGTGGGCTACCCGATTTTGTTCACCCT
GTGCGGGCCCCAAAGAAGCGGTTCAAAATTAATTTGGTACAAAATCCTGT
ATTGTACCATTTAGTACGAAACCGAGCATCCCACTTTGTATCAAATGGTA
CAATATCGGGAAATTTTCAAGGCAGGATTGTGAATTACTGTAGTAACGAA
AACACGGAATGGACGCAAACACGTGTTAGTACATTGTTTTAACTATGCGC
CACGCACTGCACGGGTCAGTGGATACGGCTCGCGGTCCTTGCAAGCTCCA
ATGGCAGGATTTCTCGACTTTTGTTCACAACACTTGAATGGGCTGTGATT
TTGTACCATTTCTCCAGAAAACGCAAAAATCGGTACAAAAGCCTATGTTT
TTATGTGGATCGAAAAAAAGCGATACAAATTTTTTTGGGGGACGAAATAA
TTGCCCCACTGTTGTGAAAACATATATGTAGCGTAGGAAACTCGAATCAC
GACTTTTTGGAAGTGCAGTACTACGAGTGTTGTACTTTTTGTACGATAAG
GCAGCAATGGCCTTGCGCAAGCCGATGTGTTAGACTCCCTTGGCAGCCTC
AGTGTGTTTCTTAGGGCCCCTCTCCCAACGCGGTAAGCGGCGTTTTTTTT
TGTCAGGACAGGATTACAGTACAGTAGACGGGCCTGTATTATAAACCACG
AAACTTGACACGACCACAGCTGCAGCAGTGGTAGTATAATACTGGTACCA
GTATAAGTTATTGCCCGACCGGAACAATTCCTGCGCGTCGTGAGTTTCAG
GTACACGAGAGCGGTGATAATAATTTTTGCTTTCGATACTCCTATATTGC
TTTAGGTCTTACGTGGACCTGTAGTGTGTGGGGAGTATTCGAAAAAACAG
TAGTTCTGATAGACAGTAAGGAAGGCTATTCGCCTACCTGCTTCTCACTT
CCTCGTACGACCCTCCATTGCTTCGTCTACTCAACTTTCAGGTGAATACT
GTTGTTGAACTTTTCTAGGTTATGTTGAAGATATCAATCTTCCTGGCTGG
TCGTCTTCTTCTCCCCTCTTTAAAACTTTTCCATTTTTACACAATCTGCA
TCATCCCTATTAAAACTGTATACACTGCATAATATATAATTTACAGCTGC
TTCTTTAAATGTCCATCATTTTCTACATGTTATAGACCCCGTTATTATTA
TTATTATTATTTCCGCACATAAGTCCGATCTCTCGTACCCCGTTAATCGT
AATAATAACAATGAACTTCAACCCTTTAGGATCATATTATTGTATTCCTG
TcCTGATCCCTTATTCCACGTTTGTTTACCGTGCATCTAGACTCAAGAGA
GCTCCTTGTTTGATTTTTTTTTTTTGGAATcCCTGCAAAGTGATTAATGT
AATTTCGTATAATGTATGGTTTCTCCCGATTTTCCCTTTGACCCTATTTT
CACCCCTTGTTAGTGTATATCAACCTCTAGGGCCAGGTGTATAAGTCTTC
CTACACAATCTGCATCATCTCTTATTAAAACTGTATACGCTATATATTGT
ATATATATTACAGCTACTTTTATTAAACTGAATTCCACATTATTTACTGT
ACATCTAGACCAAGAGAACTCCTTCCTTGATCTTCTGTAGCCCTGCATAA
TGGTTATTGTGGTTTAGTTTATAATGTAAGGTATCTCCCGATTTTCGCTT
TGATGGATCTGTTTTCATCCGTTGTTAATGTATATCAAACTCTAGGGCGA
GGTTTATAAGTCTCCCATAAAATAAATTTTGGTGTCTCTCTATGACCCCA
CTACTGTAATCCGGAAGTGGAAATATGATGTTCACCTGTACTAATATAAT
CTTACTGTACTTGTTTCTTCTTTTTCTCTTTTTACTACTACATAATGATT
AATGTACTTGTATAGTTCCCTCTCTGACCCTAACTTAATTTCCCCTATGT
CGCCACCCATCAATTTATATCAATAACAAAGAACCTCACCTATATAGTAA
TATTAATTTAATTTTACTTTAATTTCTCTAAGATCATATAAGACCATATT
ACTACACTGTAGTCCAGAACTCTTAGATTAAAAGGATTTTGGTTTTGGTG
TCCCTGCATGGAGATTAATGTAAGTGCACAGTATAACGGAGGGCTTCTCC
CCGATATTATACTGTCGACCCGATGTAGTTACATTGGGGAACCCTTTTGA
TACCATGAAGAGGTTTTGTCTCTACAGCCAATGTTCCCACCTAAACCTTT
AGACACTTTATCACTTGAGGTGGATGCTCAGAAGGTTTAGATGCGTTCAG
ATTTTTCTTAAATAAAGCGAAAACCAACAGCACCCGGAGCGAACCCGCGA
AAGACAAGACCGCCCAGGTGCCTGTCCTGGTTGTATCTATCTGTAAACTG
AATCATGGAAAATGAAAGTTTCCCTGTCCCCGCTCGCGCATTAGAAAATT
GTCACGCGGGAAGGGTTCTGGCGTCCCGACCCGTGTCAGCCTGCTTTCTC
TCTACACTTGGGGCGAATCTGGTGCTTACTCGCGGAATTTCTACGGATTT
CGGCGGTGACGTCAGCAAGTTTATACCGCCATAACCCATCGGGTCAGCCC
GGAGTTTCAAATGGTCACGAAATCGCGTACCGATGACGTTCACTGCCGAG
AGTCCGCCGGCAAAGTTCTTTTGAAACACTCAGTGGTATGTCGTGGGCAC
GTTGTCTGATATAGAGAGTACTGGAGGCGAAATAAAAAATAGAAGTGATC
GCTACACGGTAGTTGGGCACAAGATAGTTGTGCCGGATTTCCTTTTTTAG
TTCCCATCGTCGTCCGAGTGGTCTACTATGTAAACTGCACCCCTGCTAGT
GCGGAAGTCGTGAGTTCGATTCTTGTCAAGCAGGATTGTATTCTGGCGCC
TGTAGCGGAAAGCGTTAGCACGGGAGTAAGTAAAATTCAACCATTAGTTG
ACAAGTTGTAAGAGTGTTGAACTTGCATCGCTATAGAAATTCGTAAGGCG
TGAGTCGGCGATAGATAGGAGTAGTGACCACAGCCAGAATATCATCGTGG
CCGATGGGCTCATTCCACTCACATCCCGTTACATTCGCCACCACGCTTTC
AAGGAGGGTTCCACGGGAGGGAGTGGCGATGCTGTTATGGACACCACTGA
AAGGAGGCAAAAGGGCAGGAAGAGAGTGGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig987:161122..164653+

>mRNA_A-nodosum_M_contig987.9.1 ID=mRNA_A-nodosum_M_contig987.9.1|Name=mRNA_A-nodosum_M_contig987.9.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=189bp|location=Sequence derived from alignment at A-nodosum_M_contig987:161122..164653+ (Ascophyllum nodosum dioecious)
GAGGGGGACGTGATCGACGTTTGTGGCGTGTCTCCCCGGGAGATTGATAC
GGAATCCGTACCCATGGAGACGGTTCGCCAGCACAAAGAGGGCATAATTG
TAGGTGTGAGGAGGGTTCCACGGGAGGGAGTGGCGATGCTGTTATGGACA
CCACTGAAAGGAGGCAAAAGGGCAGGAAGAGAGTGGTGA
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