mRNA_A-nodosum_M_contig987.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig987.8.1
Unique NamemRNA_A-nodosum_M_contig987.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig987.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig987contigA-nodosum_M_contig987:160406..161113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size708
Hectar predicted targeting categoryother localisation
Exons1
Cds size390
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870521.1595316-UTR-A-nodosum_M_contig987:160405..1606311680870521.1595316-UTR-A-nodosum_M_contig987:160405..160631Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig987 160406..160631 +
1680870521.2681255-UTR-A-nodosum_M_contig987:161021..1611131680870521.2681255-UTR-A-nodosum_M_contig987:161021..161113Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig987 161022..161113 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870521.2549036-CDS-A-nodosum_M_contig987:160631..1610211680870521.2549036-CDS-A-nodosum_M_contig987:160631..161021Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig987 160632..161021 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig987.8.1prot_A-nodosum_M_contig987.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig987 160632..161021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig987.8.1

>prot_A-nodosum_M_contig987.8.1 ID=prot_A-nodosum_M_contig987.8.1|Name=mRNA_A-nodosum_M_contig987.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=130bp
MEENRGARSAGSGARGSQVRRPLEREPSLSGSEPDTESQRTGGPGAEELD
GLQPNRLNTSASPRDERPESLREGGDVDLGPARGRTTGGVTRRDYLSLSG
STRRTRKRNEVRPPYKLSTQTPGPTAGPS*
back to top

mRNA from alignment at A-nodosum_M_contig987:160406..161113+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig987.8.1 ID=mRNA_A-nodosum_M_contig987.8.1|Name=mRNA_A-nodosum_M_contig987.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=708bp|location=Sequence derived from alignment at A-nodosum_M_contig987:160406..161113+ (Ascophyllum nodosum dioecious)
CTTTTGTTCTCTTTTCTCTGTTCAGCAGACCACGAGCGGGATTGGCCACC
GTGTAAAGTAGTTTTTTCGGGTTGGCAACCTATACGCTGAATGTGAGAAA
CAACAACAACAACAACAACAACAACGCCCACTATCAGCAGAGCTCCAGGT
GAAACATAAAACCTCGCGGGGAGACACGATTTCGTTGGTTCTGGCGAAGG
AGATCCATCCGCGTGAACTCAACATCATGGAAGAAAACAGAGGTGCGAGA
TCGGCTGGGAGTGGTGCCAGAGGGTCACAGGTTCGCCGTCCCCTTGAACG
CGAGCCTAGTCTCTCTGGGAGCGAGCCTGATACTGAGTCCCAGCGCACAG
GTGGACCCGGCGCAGAAGAGCTGGATGGGCTTCAGCCGAATAGATTGAAT
ACTTCAGCCAGTCCAAGAGATGAGCGACCCGAGTCTCTACGTGAGGGAGG
CGATGTAGACCTTGGCCCGGCCCGGGGAAGGACCACAGGAGGCGTGACAC
GACGAGACTATTTGTCACTGTCAGGATCGACGCGACGTACCAGAAAAAGG
AACGAGGTGCGGCCTCCCTACAAGCTATCTACCCAGACGCCGGGGCCCAC
TGCTGGGCCCTCTTAAGGAGTTGTTGGTGCCAGGAAACGCAGCCGCTCAC
TGGCCGAAAACACTCGTGACAAGCCCGACGAAGAGAGTTCCTCGGAATTA
TCTACCAG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig987:160406..161113+

>mRNA_A-nodosum_M_contig987.8.1 ID=mRNA_A-nodosum_M_contig987.8.1|Name=mRNA_A-nodosum_M_contig987.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at A-nodosum_M_contig987:160406..161113+ (Ascophyllum nodosum dioecious)
ATGGAAGAAAACAGAGGTGCGAGATCGGCTGGGAGTGGTGCCAGAGGGTC
ACAGGTTCGCCGTCCCCTTGAACGCGAGCCTAGTCTCTCTGGGAGCGAGC
CTGATACTGAGTCCCAGCGCACAGGTGGACCCGGCGCAGAAGAGCTGGAT
GGGCTTCAGCCGAATAGATTGAATACTTCAGCCAGTCCAAGAGATGAGCG
ACCCGAGTCTCTACGTGAGGGAGGCGATGTAGACCTTGGCCCGGCCCGGG
GAAGGACCACAGGAGGCGTGACACGACGAGACTATTTGTCACTGTCAGGA
TCGACGCGACGTACCAGAAAAAGGAACGAGGTGCGGCCTCCCTACAAGCT
ATCTACCCAGACGCCGGGGCCCACTGCTGGGCCCTCTTAA
back to top