mRNA_A-nodosum_M_contig986.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig986.4.1
Unique NamemRNA_A-nodosum_M_contig986.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig986.4.1 vs. uniprot
Match: A0A6H5L6Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z1_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 3.380e-11
Identity = 27/49 (55.10%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:  133 IKRMVVELYDDTSRRYNAELTAAIRKAPIPIVFINCDIWQSKVSGEKFI 279
            IK+M+VE+Y  T+R +N+EL   +R+A IPI+++NCD+W S+VSGEK+I
Sbjct:  256 IKKMIVEMYAATTRAFNSELVKDVRRALIPILYLNCDLWTSRVSGEKYI 304
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BLAST of mRNA_A-nodosum_M_contig986.4.1 vs. uniprot
Match: A0A6H5KX27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX27_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 3.380e-11
Identity = 27/49 (55.10%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:  133 IKRMVVELYDDTSRRYNAELTAAIRKAPIPIVFINCDIWQSKVSGEKFI 279
            IK+M+VE+Y  T+R +N+EL   +R+A IPI+++NCD+W S+VSGEK+I
Sbjct:  177 IKKMIVEMYAATTRAFNSELVKDVRRALIPILYLNCDLWTSRVSGEKYI 225
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BLAST of mRNA_A-nodosum_M_contig986.4.1 vs. uniprot
Match: D7G3L2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L2_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.020e-9
Identity = 23/54 (42.59%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:  118 LNHKGIKRMVVELYDDTSRRYNAELTAAIRKAPIPIVFINCDIWQSKVSGEKFI 279
            +N+K +K+++ E+Y  T++ +NA +   +R A IPI+++NCD+W S VSG K+I
Sbjct:  111 INNKAVKKVIAEMYHATTQEFNASMQKTLRNATIPILYVNCDLWTSHVSGLKYI 164
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BLAST of mRNA_A-nodosum_M_contig986.4.1 vs. uniprot
Match: D7G4Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Z8_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.420e-9
Identity = 23/54 (42.59%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:  118 LNHKGIKRMVVELYDDTSRRYNAELTAAIRKAPIPIVFINCDIWQSKVSGEKFI 279
            +N+K +K+++ ++Y  T+R +NA +   +R A IPI+++NCD+W S VSG K+I
Sbjct:  111 INNKAVKKVIAKMYHVTTREFNASMQKTLRNATIPILYVNCDLWTSHVSGLKYI 164
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BLAST of mRNA_A-nodosum_M_contig986.4.1 vs. uniprot
Match: A0A6H5JP19_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP19_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 9.890e-7
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:  142 MVVELYDDTSRRYNAELTAAIRKAPIPIVFINCDIWQSKVSGEKFI 279
            M+VE+Y+ T +  N +L   +  A IPI++ NCDIW +KVSGEKFI
Sbjct:    1 MIVEMYNATLKVVNKDLQRQLALAIIPILYANCDIWTTKVSGEKFI 46
[Close]
BLAST of mRNA_A-nodosum_M_contig986.4.1 vs. uniprot
Match: A0A6H5K7T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7T5_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.870e-6
Identity = 19/47 (40.43%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:  133 IKRMVVELYDDTSRRYNAELTAAIRKAPIPIVFINCDIWQSKVSGEK 273
            +K+M+VE+Y  T+ ++N ++   +R+A +PI+++NCD+W SK S +K
Sbjct:   23 VKKMIVEMYAATTEKFNRQILKDVRRALVPILYMNCDLWTSKGSQDK 69
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig986.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L6Z1_9PHAE3.380e-1155.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX27_9PHAE3.380e-1155.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3L2_ECTSI1.020e-942.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4Z8_ECTSI1.420e-942.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP19_9PHAE9.890e-752.17Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7T5_9PHAE1.870e-640.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig986contigA-nodosum_M_contig986:50484..52031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G3L2
PFAMsDimer_Tnp_hAT
Model size282
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.67e-10
EggNOG OGs2CZK4@1|root,2SARG@2759|Eukaryota
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870520.4463835-CDS-A-nodosum_M_contig986:50483..505611680870520.4463835-CDS-A-nodosum_M_contig986:50483..50561Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig986 50484..50561 +
1680870520.4573524-CDS-A-nodosum_M_contig986:50574..506281680870520.4573524-CDS-A-nodosum_M_contig986:50574..50628Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig986 50575..50628 +
1680870520.4705334-CDS-A-nodosum_M_contig986:51883..520301680870520.4705334-CDS-A-nodosum_M_contig986:51883..52030Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig986 51884..52030 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig986.4.1prot_A-nodosum_M_contig986.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig986 50484..52030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig986.4.1

>prot_A-nodosum_M_contig986.4.1 ID=prot_A-nodosum_M_contig986.4.1|Name=mRNA_A-nodosum_M_contig986.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=93bp
FDPVREELHHQRCVPLQHWREPTYSPIRGEEKDRFQPERLNHKGIKRMVV
ELYDDTSRRYNAELTAAIRKAPIPIVFINCDIWQSKVSGEKFI
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mRNA from alignment at A-nodosum_M_contig986:50484..52031+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig986.4.1 ID=mRNA_A-nodosum_M_contig986.4.1|Name=mRNA_A-nodosum_M_contig986.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1548bp|location=Sequence derived from alignment at A-nodosum_M_contig986:50484..52031+ (Ascophyllum nodosum dioecious)
TTTGATCCAGTTCGTGAGGAGCTTCATCATCAGCGCTGCGTGCCCCTTCA
GCATTGGCGAGAACCAACATATTCGCCACTGCCTCTCCCTCATTCGCGGT
GAAGAGAAGGACAGGTTTCAACCGGAGCGTCTCAACCACAAGGGGGTAAG
TTTGTTGATGACGTAATTGTATCATGGTCACGGTGCCAGCCGATACAGTA
GTGTCCTGTACCTGGTGTCAGTGGTCAGTGCCCCTTATACCCTGGACGAT
ATGCCATTGGATCGGATATCGGATTTTCGATAGGCCAGAAATTGTCCATA
TCGATACCTATCGTAGCCCATCACGCCAGAGGATTCGAAGCTATCGATAT
GTATCGGAAGCAGACGATAGGTCGGTGCAATAGGCCACGATAACATATTG
CGCAATCAATAGGGTGGAGGGAGCGGCCTATCGATAGGTATTGAAAAAAC
CGGCAGGGTTGCGCAATCTTCGCCGGCAGCTATCGCAAAAAGATATAGCG
TTGTTTGAGTGACGATCGATACCTATCACTTTGAACGATAGGCGAAGTCA
ATGATCGATCAATGCCTATTGGCTTTTAACAATATGTGAGTCGATACCAA
TTGGTCGTCGATACCCATCGGTGTGGACGATATATGGTGCCTATTGATCT
ATTTCGTGCATCCATATATCCATATATAATATGTATATATTAATATTAAT
ATGCGTATGTAGTTGTATACGTATACATATTATATTATATATTACTCGGA
GTATATCACATTATATAGGAGTATATAAATAATATAATACAAATATATTG
TAATATATTACTATACTATATAATATAGACTAATATATATTATATTAATT
AATAATATTAATATAATATTACTCCGATTATATTATTTGTATACATGCAA
ATAATACAATTATGTATATTAATAAATATAATAAGTATACTTTTAATTTA
TTTTATTATATGTATTATATAAAAATATTATATATATTAATATAATTTAT
TAATATGATATATATAGCACGATATATAGATATAGACAATATATATTCAT
ATTGGCATATAATAATATATTATATATGATATATATAGATATAGACAATA
TATATTAATATTGGCATATAATAATATATTATATATATGTGAGTTATATA
TAATATATATTTTTAACATTAAATATGTACTTTTATATATTAATATCAAT
TATTAATACATGTATAGAAAGTGGTAGAAAAGGGGCTGGTGTGTTATTAA
TAATATAATAAAAATAGGTGAGCGGAAAGATAACTATGCTTGCACAATGT
GGTGGCGTCGTTAGCGCGTACCCCGCTGCACTTGTTCACAACATTTCTGT
TCGTGGTTCGTACTGCCCACTGCCCACGACCCACCGCTCCAATACCGCAG
ATCAAGAGGATGGTGGTCGAGCTCTACGACGACACCTCCAGGAGGTACAA
CGCCGAACTAACTGCAGCGATTCGCAAGGCCCCCATCCCTATCGTGTTCA
TCAACTGCGACATTTGGCAGAGCAAGGTGTCAGGAGAAAAGTTCATCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig986:50484..52031+

>mRNA_A-nodosum_M_contig986.4.1 ID=mRNA_A-nodosum_M_contig986.4.1|Name=mRNA_A-nodosum_M_contig986.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=279bp|location=Sequence derived from alignment at A-nodosum_M_contig986:50484..52031+ (Ascophyllum nodosum dioecious)
TTTGATCCAGTTCGTGAGGAGCTTCATCATCAGCGCTGCGTGCCCCTTCA
GCATTGGCGAGAACCAACATATTCGCCAATTCGCGGTGAAGAGAAGGACA
GGTTTCAACCGGAGCGTCTCAACCACAAGGGGATCAAGAGGATGGTGGTC
GAGCTCTACGACGACACCTCCAGGAGGTACAACGCCGAACTAACTGCAGC
GATTCGCAAGGCCCCCATCCCTATCGTGTTCATCAACTGCGACATTTGGC
AGAGCAAGGTGTCAGGAGAAAAGTTCATC
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