mRNA_A-nodosum_M_contig986.10.4 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig986.10.4
Unique NamemRNA_A-nodosum_M_contig986.10.4
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig986.10.4 vs. uniprot
Match: D7FT55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT55_ECTSI)

HSP 1 Score: 352 bits (904), Expect = 5.700e-107
Identity = 176/350 (50.29%), Postives = 221/350 (63.14%), Query Frame = 3 
Query:  858 YDEDEALAALLDDTCDFNLFMCCWTQNDD-QGMEDNTDVCRYTDSTHAGRDY--PGESEGEVHCHGFGWNEGADYLTQILSLYHFVRRFDHRNQRGYFGSIEGAPECACIEDMPVVSRADCTTFNRDGLTACANNDLRSHYRGRMDSPGGDLDFNLVATCDNENAPITTDYAYVEERKVEDTYDEDDAVQEILASCEYNTYMCCWTENEGQGMQDNTDVCRVID--ESGEITEYPGESEGDVHCHGFGWKDD-TDFLTNKLPLYHYVINFDHADTRGYSGNVPGAPQCGCVEHMPVVSRADCTTYNRDG-----LTACMNNDLFTHYRGRLGKPNGDMDVNLVKQCNNAD 1874
            YDED  +A LLD TC+++ +MCCWT +D   GM  N+DVCR  D    G  +  P +SEG V+CHGF W EGAD  T IL LYH+V+      + G++G++EGAPEC CIE+MP VS ++C+ ++ +G+  C NN L S YRGR+  P G +D NLV TCDNE+ P   DY Y                     SC +NTYMCCWTEN+G+GM DNTDVCRV+D    GE  E+PG+SEG+VHCHGF W +D TD   + L    +V NFDH D RGY GN+ GAP CGC+E MPVVS ADCTTY+ D       TAC  NDL T Y      P G++  NLV  C+NA+
Sbjct:  150 YDEDVEVAKLLDSTCEWDTYMCCWTGSDGADGMTANSDVCRVLDYPEEGDSFEMPRDSEGSVYCHGFAWVEGADVDTHILPLYHYVKNVGRTEEGGFYGNVEGAPECGCIEEMPQVSYSECSRYSWEGIVGCGNNGLLSQYRGRLGEPYGPMDDNLVRTCDNEDVP---DYDY--------------------GSCSHNTYMCCWTENDGEGMADNTDVCRVVDYPSMGETLEFPGDSEGEVHCHGFVWPEDATDKYIHLLS--QFVQNFDHRDRRGYYGNIEGAPMCGCIEEMPVVSEADCTTYDTDPEREGKFTACTKNDLRTRYEAEY--PTGEL-ANLVDTCDNAE 471
[Close]
BLAST of mRNA_A-nodosum_M_contig986.10.4 vs. uniprot
Match: D7G2N0_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G2N0_ECTSI)

HSP 1 Score: 344 bits (883), Expect = 9.690e-104
Identity = 174/350 (49.71%), Postives = 223/350 (63.71%), Query Frame = 3 
Query:  858 YDEDEALAALLDDTCDFNLFMCCWTQND-DQGMEDNTDVCRYTDSTHAGR--DYPGESEGEVHCHGFGWNEGADYLTQILSLYHFVRRFDHRNQRGYFGSIEGAPECACIEDMPVVSRADCTTFNRDGLTACANNDLRSHYRGRMDSPGGDLDFNLVATCDNENAPITTDYAYVEERKVEDTYDEDDAVQEILASCEYNTYMCCWTENEGQGMQDNTDVCRVID--ESGEITEYPGESEGDVHCHGFGWKDD-TDFLTNKLPLYHYVINFDHADTRGYSGNVPGAPQCGCVEHMPVVSRADCTTYN----RDG-LTACMNNDLFTHYRGRLGKPNGDMDVNLVKQCNNAD 1874
            YDED  +A +L +TC++N +MCCWT +D  +GM  N DVCR  D    G   + P + EG V+CHGF W + AD  + IL LYH+V   +  +  GY+G++EG P C CIEDMPVVS A C+ F  +G+  C +N LRS Y+ ++D P G++++NLV  CDNE+ P   DY +                     +C +NTYMCCWTEN+GQGM DNTDVCRVID    GE TEYPGESEG+VHCHGF W +D TD   + L    +V +FDH D RGY GN+ GAP CGC+E MP VS ADCTTY+    R+G  TAC NNDL T Y      P G++D NLV +C+NA+
Sbjct:  164 YDEDVDVATILPETCEWNTYMCCWTGHDGSKGMYGNADVCRVLDYPEEGDVLELPRDDEGPVYCHGFAWADDADIDSHILPLYHYVTNVNRTDDGGYYGNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKYKLDEPKGEMEYNLVRECDNEDVP---DYDF--------------------RTCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDATDKYIHLLA--QFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEY--PMGELD-NLVGECDNAE 485
[Close]
BLAST of mRNA_A-nodosum_M_contig986.10.4 vs. uniprot
Match: D7G2N2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N2_ECTSI)

HSP 1 Score: 352 bits (903), Expect = 2.140e-103
Identity = 178/348 (51.15%), Postives = 222/348 (63.79%), Query Frame = 3 
Query:  858 YDEDEALAALLDDTCDFNLFMCCWTQNDDQG-MEDNTDVCRYTDSTHAGR--DYPGESEGEVHCHGFGWNEGADYLTQILSLYHFVRRFDHRNQRGYFGSIEGAPECACIEDMPVVSRADCTTFNRDGLTACANNDLRSHYRGRMDSPGGDLDFNLVATCDNENAPITTDYAYVEERKVEDTYDEDDAVQEILASCEYNTYMCCWTENEGQGMQDNTDVCRVID--ESGEITEYPGESEGDVHCHGFGWKDD-TDFLTNKLPLYHYVINFDHADTRGYSGNVPGAPQCGCVEHMPVVSRADCTTYN----RDG-LTACMNNDLFTHYRGRLGKPNGDMDVNLVKQCNN 1868
            YDED  +A +L +TC++N +MCCWT +D  G M  NTDVCR  D    G   + P + EG V+CHGF W +GAD  + IL LYH+V   +  +  GY+G++EG P C CIEDMPVVS A C+ F R+G+  C  N LRSHY+ R+D P G+L++NLV  CDNE+ P   DY +                     +C +NTYMCCWTEN+GQGM DNTDVCRVID    GE TEYPGESEG+VHCHGF W +D TD   + L    +V +FDH D RGY GN+ GAP CGC+E MP VS ADCTTY+    R+G  TAC  NDL T Y      P G++D NLV +C+N
Sbjct:  121 YDEDVDVANILPETCEWNTYMCCWTGHDGSGGMYGNTDVCRVLDYPEEGDVLELPRDDEGPVYCHGFAWADGADIDSHILPLYHYVTNVNRTDDGGYYGNVEGVPSCGCIEDMPVVSDAACSRFGREGIEPCGANSLRSHYKNRLDEPKGELEYNLVRECDNEDVP---DYDF--------------------RTCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDATDKYIHLLA--QFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTKNDLRTRYEEEY--PMGELD-NLVGECDN 440
[Close]
BLAST of mRNA_A-nodosum_M_contig986.10.4 vs. uniprot
Match: D7FT54_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT54_ECTSI)

HSP 1 Score: 320 bits (820), Expect = 1.330e-95
Identity = 165/348 (47.41%), Postives = 214/348 (61.49%), Query Frame = 3 
Query:  858 YDEDEALAALLDDTCDFNLFMCCWTQNDD-QGMEDNTDVCRYTDSTHAGR--DYPGESEGEVHCHGFGWNEGADYLTQILSLYHFVRRFDHRNQRGYFGSIEGAPECACIEDMPVVSRADCTTFNRDGLTACANNDLRSHYRGRMDSPGGDLDFNLVATCDNENAPITTDYAYVEERKVEDTYDEDDAVQEILASCEYNTYMCCWTENEGQGMQDNTDVCRVID--ESGEITEYPGESEGDVHCHGFGWKDD-TDFLTNKLPLYHYVINFDHADTRGYSGNVPGAPQCGCVEHMPVVSRADCTTYN-----RDGLTACMNNDLFTHYRGRLGKPNGDMDVNLVKQCNN 1868
            YDED  +A LL + C++N +MCCWT ND   GM  NTDVCR  D    G   ++P +SEG V+CHGFGW +GAD  T IL LYH V       + GY+G++EGAP+C C+E+MPVVS ++C+ F+ DG+T C  + L S+Y  R+D P G L+ NLV  CDN + P   D+ + E                    C+ +TYMCCWTEN+ +G+ DNTDVCR+ D   +GE  EYPG+SEGDVHCHG  W +D TD   + L    YV  FDH   +GY GN+ GAP CGC E MP VS+ADCT Y+      D +  C  NDL T Y   +  P+GD+D NLV +C+N
Sbjct:   98 YDEDVHVAYLLPEMCEWNTYMCCWTGNDGPDGMTSNTDVCRVWDYPEEGNSLEFPRDSEGSVYCHGFGWADGADVNTNILPLYHSVINTGRTEEGGYYGNVEGAPQCGCLEEMPVVSFSECSRFDGDGITDCGEHGLYSNYVSRIDEPNGPLEDNLVRICDNYDVP---DFDFRE--------------------CDSHTYMCCWTENDAKGVLDNTDVCRIHDYPSAGETLEYPGDSEGDVHCHGIVWPEDATDKYIHLLA--QYVQTFDHIGNKGYYGNIEGAPMCGCAEDMPEVSKADCTNYSPTEEDEDRIRGCDPNDLRTRYD--VLYPDGDLD-NLVGRCDN 417
[Close]
BLAST of mRNA_A-nodosum_M_contig986.10.4 vs. uniprot
Match: A0A6H5JT81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT81_9PHAE)

HSP 1 Score: 244 bits (622), Expect = 1.010e-69
Identity = 137/343 (39.94%), Postives = 181/343 (52.77%), Query Frame = 3 
Query:  876 LAALLDDTCDFNLFMCCWTQND-DQGMEDNTDVCRYTDSTHAGR--DYPGESEGEVHCHGFGWNEGADYLTQILSLYHFVRRFDHRNQRGYFGSIEGAPECACIEDMPVVSRADCTTFNRDGLTACANNDLRSHYRGRMDSPGGDLDFNLVATCDNENAPITTDYAYVEERKVEDTYDEDDAVQEILASCEYNTYMCCWTENEGQGMQDNTDVCRVID--ESGEITEYPGESEGDVHCHGFGWKDDTDFLTNKLPLYHYVINFDHADTRGYSGNVPGAPQCGCVEHMPVVSRADCTTYN----RDG-LTACMNNDLFTHYRGRLGKPNGDMDVNLVKQCNNAD 1874
            +A +L +TC++N +MCCWT +D  +GM  N DVCR  +    G   + P + EG V+CHGF W +GAD  + IL LYH+V   +  +  GY+G++EG P C CIEDMPVVS A C+ F  +G+  C +N LRS Y+ ++D P G++++NLV  CDNE+ P   DY +                     +C +NTYMCCWTEN+GQGM DNTDVCRVID    GE TEYPG SEG+V                                                      S ADCTTY+    R+G  TAC  NDL T Y      P G++  NLV +C+NA+
Sbjct:    6 VATILPETCEWNTYMCCWTGHDGSKGMYGNADVCRVLNYPEEGDVLELPRDDEGPVYCHGFAWADGADIDSHILPLYHYVTNVNRTDDGGYYGNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKYKLDEPKGEMEYNLVRECDNEDVP---DYDF--------------------RTCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGGSEGEV------------------------------------------------------SEADCTTYDNEPGREGKFTACTKNDLRTRYEEEY--PMGELS-NLVGECDNAE 268
[Close]
BLAST of mRNA_A-nodosum_M_contig986.10.4 vs. uniprot
Match: A0A6H5L319_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L319_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 5.080e-65
Identity = 147/398 (36.93%), Postives = 187/398 (46.98%), Query Frame = 3 
Query:  858 YDEDEALAALLDDTCDFNLFMCCWTQNDD-QGMEDNTDVCRYTDSTHAGRDY--PGESEGEVHCHGFGWNEGADYLTQILSLYHFVRRFDHRNQRGYF-----GSIEGAPECACIEDMPVVSRADCTTFNRDGLTACANNDLRSHYRGRMDSPGGDLDFNLVATCDNENAPITTDYAYVEERKVEDTYDEDDAVQEILASCEYNTYMCCWTENEGQGMQDNT----------------------------------------DVCRVID--ESGEITEYPGESEGDVHCHGFGWKDD-TDFLTNKLPLYHYVINFDHADTRGYSG---------------------------------------------NVPGAPQCGCVEHMPVVSRADCTTYNRD 1763
            Y+E   +A LLD TC+++ +MCCWT ND   GM  N+DVCR  D    G  +  P ESEG V CHGF W EGAD  T IL LYH+V+      + G++      S+EG PEC CIE++P VS ++C+ ++ +G+  C NN L S YRG +  P G +D NLV TCDNE+ P   DY +                     SC +NTYMCC TEN+GQGM +NT                                        DVCRV+D    G   E+ G+SE + H HGF W +D TD   + L    +V  FDH D RGY G                                             ++ GAP  GCVE MPVVS AD TTY+ D
Sbjct:   32 YEEHVEVAKLLDSTCEWDPYMCCWTGNDGADGMTANSDVCRVLDYPEEGDSFEMPRESEGFVCCHGFAWAEGADVDTHILPLYHYVKNVGRTEEAGFYEMKLPDSVEGTPECGCIEEIPSVSCSECSRYSWEGIAGCGNNGLLSQYRGCLGEPCGPMDDNLVRTCDNEDIP---DYDH--------------------GSCSHNTYMCCLTENDGQGMAENTVRRRVPAVASCVEFSCYSADRKDVGLTMLSVILGHLGATKDVCRVLDYPSVGGALEFAGDSEREAHRHGFVWTEDATDKYIHLLS--QFVQKFDHRDRRGYYGKYITVGKAAHNVIMVNGRTTGPGEDNTNNPLSPPPNVSHVILVVTSIEGAPMYGCVEEMPVVSEADGTTYDTD 404
[Close]
BLAST of mRNA_A-nodosum_M_contig986.10.4 vs. uniprot
Match: D7FT53_ECTSI (Imm downregulated 17 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT53_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 1.780e-45
Identity = 79/161 (49.07%), Postives = 108/161 (67.08%), Query Frame = 3 
Query:  858 YDEDEALAALLDDTCDFNLFMCCWTQNDD-QGMEDNTDVCRYTDSTHAGRDYPGESEGEVHCHGFGWNEGADYLTQILSLYHFVRRFDHRNQRG-YFGSIEGAPECACIEDMPVVSRADCTTFNRDGLTACANNDLRSHYRGRMDSPGGDLDFNLVATCDN 1334
            YDED  +A LLD TC+++ +MCC+T +D  +G+  NTDVC        G + PG+SEG V+CHGF W EGAD    IL LYH+V+      + G Y+G++EGAPEC CIE+MP VS A+C+ F+ DG+  C    L S Y GR+D+P G+++ NLV +CDN
Sbjct:   24 YDEDLEVAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSVPSE---GLEMPGDSEGPVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRLDAPYGEMEHNLVRSCDN 181
[Close]
BLAST of mRNA_A-nodosum_M_contig986.10.4 vs. uniprot
Match: A0A6H5L9G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9G6_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 3.840e-42
Identity = 75/161 (46.58%), Postives = 103/161 (63.98%), Query Frame = 3 
Query:  858 YDEDEALAALLDDTCDFNLFMCCWTQNDD-QGMEDNTDVCRYTDSTHAGRDYPGESEGEVHCHGFGWNEGADYLTQILSLYHFVRRFDHRNQRG-YFGSIEGAPECACIEDMPVVSRADCTTFNRDGLTACANNDLRSHYRGRMDSPGGDLDFNLVATCDN 1334
            YDED  +A LLDDTC+++ +MCC+T +D  +G+  NTDVC               +EG V+CHGF W +GAD    IL LYH+V+      + G Y+GS+EGAPEC CIE+MP VS A+C+ F+ DG+  C    L S Y GR+ +P G+++ NLV +CDN
Sbjct:   31 YDEDLEVAKLLDDTCEWDTYMCCFTNHDSGEGVTANTDVCSVP------------NEGSVYCHGFAWPDGADVNNHILPLYHYVKNIGRTEEEGGYYGSVEGAPECGCIEEMPQVSFAECSRFDIDGIVGCGEGGLYSQYNGRLGAPYGEMEHNLVRSCDN 179
[Close]
BLAST of mRNA_A-nodosum_M_contig986.10.4 vs. uniprot
Match: D7G8D2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D2_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 5.900e-31
Identity = 70/151 (46.36%), Postives = 87/151 (57.62%), Query Frame = 3 
Query: 1434 CEYNTYMCCWTENEGQGMQDNTDVCRVIDESGEITEYPGESEGDVHCHGFGWKDD-TDFLTNKLPLYHYVINFDHADTRGYSGNVPGAPQCGCVEHMPVVSRADCTTYNRDGLT-----ACMNNDLFTHYRGRLGKPNGDMDVNLVKQCNN 1868
            C+YNT+MCCW    G  ++DNTDVC    E     E+PG+SEG VHCHGF W ++ +D     L L    IN  H D + Y+GN+PGAP C C+E MP VSRADCT Y +  L      AC  NDL   Y+     P G     LVK+C+N
Sbjct:   59 CDYNTWMCCWDGRNGLAVKDNTDVCSYRGE-----EFPGDSEGPVHCHGFVWPENASDDFIKYLALDVAFIN--HVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLRRAYKELY--PTGRGRDLLVKKCDN 200
[Close]
BLAST of mRNA_A-nodosum_M_contig986.10.4 vs. uniprot
Match: D7G8C5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C5_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 3.300e-30
Identity = 70/151 (46.36%), Postives = 87/151 (57.62%), Query Frame = 3 
Query: 1434 CEYNTYMCCWTENEGQGMQDNTDVCRVIDESGEITEYPGESEGDVHCHGFGWKDD-TDFLTNKLPLYHYVINFDHADTRGYSGNVPGAPQCGCVEHMPVVSRADCTTYNRDGLT-----ACMNNDLFTHYRGRLGKPNGDMDVNLVKQCNN 1868
            C+YNT+MCCW    G  ++DNTDVC    E     E+PG+SEG VHCHGF W ++ +D     L L    IN  H D + Y+GN+PGAP C C+E MP VSRADCT Y +  L      AC  NDL   Y+     P G     LVK+C+N
Sbjct:  123 CDYNTWMCCWDGRNGLAVKDNTDVCSYRGE-----EFPGDSEGPVHCHGFVWPENASDDFIKYLALDVAFIN--HVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLRRAYKELY--PTGRGRDLLVKKCDN 264
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig986.10.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT55_ECTSI5.700e-10750.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2N0_ECTSI9.690e-10449.71Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
D7G2N2_ECTSI2.140e-10351.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FT54_ECTSI1.330e-9547.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JT81_9PHAE1.010e-6939.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L319_9PHAE5.080e-6536.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT53_ECTSI1.780e-4549.07Imm downregulated 17 n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5L9G6_9PHAE3.840e-4246.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8D2_ECTSI5.900e-3146.36Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G8C5_ECTSI3.300e-3046.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig986contigA-nodosum_M_contig986:224419..231662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G2N1
Model size3330
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons7
Evalue6e-114
EggNOG OGs2E0FN@1|root,2S7W7@2759|Eukaryota
Cds size1860
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig986.10.4prot_A-nodosum_M_contig986.10.4Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig986 227059..230057 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870520.7257152-UTR-A-nodosum_M_contig986:224418..2245121680870520.7257152-UTR-A-nodosum_M_contig986:224418..224512Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig986 224419..224512 +
1680870520.737781-UTR-A-nodosum_M_contig986:227045..2270581680870520.737781-UTR-A-nodosum_M_contig986:227045..227058Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig986 227046..227058 +
1680870520.8976562-UTR-A-nodosum_M_contig986:230057..2300851680870520.8976562-UTR-A-nodosum_M_contig986:230057..230085Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig986 230058..230085 +
1680870520.912958-UTR-A-nodosum_M_contig986:230327..2316621680870520.912958-UTR-A-nodosum_M_contig986:230327..231662Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig986 230328..231662 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870520.7497547-CDS-A-nodosum_M_contig986:227058..2274831680870520.7497547-CDS-A-nodosum_M_contig986:227058..227483Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig986 227059..227483 +
1680870520.838444-CDS-A-nodosum_M_contig986:227789..2282231680870520.838444-CDS-A-nodosum_M_contig986:227789..228223Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig986 227790..228223 +
1680870520.8494678-CDS-A-nodosum_M_contig986:228475..2286561680870520.8494678-CDS-A-nodosum_M_contig986:228475..228656Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig986 228476..228656 +
1680870520.8601098-CDS-A-nodosum_M_contig986:228904..2294381680870520.8601098-CDS-A-nodosum_M_contig986:228904..229438Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig986 228905..229438 +
1680870520.8743432-CDS-A-nodosum_M_contig986:229771..2300571680870520.8743432-CDS-A-nodosum_M_contig986:229771..230057Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig986 229772..230057 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig986.10.4

>prot_A-nodosum_M_contig986.10.4 ID=prot_A-nodosum_M_contig986.10.4|Name=mRNA_A-nodosum_M_contig986.10.4|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=620bp
MKLALEFSSIALLALLSAAAASSSTSSDKMGASSSTSSQREVDLECYDED
EEQHLTQLMESACDYNIFMCCWTENDGEGIEDNTDVCRYTDSSQTTRDYP
GDSEGAVNCHGFGWPKQSDYAAYIEPLYRYVRNFDYRGYYGSVPDAPECG
CIEDMPVVSRADCSTYSRDGLTECMNNDLSRFYTAGLGSFAGDMSFNLVG
TCDNVNGPVSSDSETGGTSSGSTTSSVEDATSLTMNEGATTVDMSPDVPE
YDEDEALAALLDDTCDFNLFMCCWTQNDDQGMEDNTDVCRYTDSTHAGRD
YPGESEGEVHCHGFGWNEGADYLTQILSLYHFVRRFDHRNQRGYFGSIEG
APECACIEDMPVVSRADCTTFNRDGLTACANNDLRSHYRGRMDSPGGDLD
FNLVATCDNENAPITTDYAYVEERKVEDTYDEDDAVQEILASCEYNTYMC
CWTENEGQGMQDNTDVCRVIDESGEITEYPGESEGDVHCHGFGWKDDTDF
LTNKLPLYHYVINFDHADTRGYSGNVPGAPQCGCVEHMPVVSRADCTTYN
RDGLTACMNNDLFTHYRGRLGKPNGDMDVNLVKQCNNADETTSANEDTTP
SPTTPPDTIYASTSTDGSA*
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mRNA from alignment at A-nodosum_M_contig986:224419..231662+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig986.10.4 ID=mRNA_A-nodosum_M_contig986.10.4|Name=mRNA_A-nodosum_M_contig986.10.4|organism=Ascophyllum nodosum dioecious|type=mRNA|length=7244bp|location=Sequence derived from alignment at A-nodosum_M_contig986:224419..231662+ (Ascophyllum nodosum dioecious)
CCCCACATCTCACTTCGCAACCAAGCGCACCAGCCAAAACAGCGAGTGGA
CTTCAAATTTCGTTAGCAAGGTCTTCTTCGAATCTTGACACTAGGTGGGT
GAGGCTATAGAGTATGGCATGACGCAATATTAGATATTACTACGCCACGA
GAGAGAGTCTATCCGTCCTCCCATGCTAATGGAACCTATAGACTATATCT
CCGATTCATGCATACCTGGTATCTAATTTTGACCTCACTCACTCACTCAA
TGATACTGGCGAAGCCATGCATGATGGTTCCATTCCTCGAGAAAAATTTA
CCGTCTAAAAGGATAGGGCGGGCGGCTCTAGGCTCTATTCCCGCTGCATT
ATTATTATCAGGCGGGGTGATGAAAACCGAACTAAGACTTGATTCAGTCA
ACCAGATTGTCTGTAAGAGTGGACTAGAAGTAGCCTGTGCATGCTTTACA
TGGACGTTTACCGTGCCAAATGGCAGTCTCGCCGACTCAGGGTGATACTT
GATTGGAAGACTTCTATAATATCATGTGCCGGATATTATATCTCTGCACC
GTATTCAATGGTGGGCAAAACCATCACACTCGACGTTTCGCGTCCTCTCC
TACGACGCGTTTCGGAAAGTTGTACGTCAAAACTCAATACTATATAGGAC
AGTCTTCTGTTCACTTTTTTTCGTAGCACCATCGCATGCGAGGGCGAAGG
TTTCACGCCTGTGCAATTTATCGTGTGTACAACTGTTTTTAAAAAAACTG
AACGCGCTTAGACCTTCTGAGCATCCCCCAGTCAGGGGGGAAAATATCAA
AACGTTTAGGTAAGATCATAGGCTGCAAATACATAACACCTTCATTGTTG
TTGTCCATGTGAATTGCTATTCCATTAGCTCTGGAGTTATGGCGCAAAAA
TCCTCTCTCGTTGGGCTGGAACTATTAAATAAGCATATGCTACATAATAA
ATAGCATACCCGAACAACCACCGATGGAGAATAGAATAAAGTATTGGCTC
TTGCCTGCAATTGGCCGTCCAAACGCAAAGAATCGTTATTACGTACCAGG
TACCAGATAATAATGAAGCAAATCAGTGTAAGATGTATGCAGTAGATATA
GTCTGCTTCCACCATCCGTCTTTTTGCATTGCTAATAATAATATACAGCT
GCTGGTAAGAGGGCTCGTCGCGTCACAAACCACTCTCAAAATCGATTGAG
CCTTTAATGTGGCGTAATGATCATCTTGCGTTTCGGAACTGTAGACGTAG
ACGAGATCTCAGTTCTACGAACTATAGTAGGTAATAACTACTGCATATAT
ATACTGTAGCAGCATCGGCGGCGGCGGCAGTAAATATATCTTACGGCAGT
TCAGAACCGAAACCAAAGCTACCCCTTTCTGCGGAGTAACCTTGGAAGCG
AAATAACACTTTTGAAGGGTTAAATTATATCACTGCTGCTTTGTTGTACT
GTGCATGACCCTCTAACCTCTACATAATTTATCTACTACAACACAGCTAT
TTACCGTACAGCTGGAGAGATTTATATTCTGGTTTTCTCAAAACCCGATT
CTACGGTGCAGTGACATAATAAGTGGCAAGGTAAAACATTTTGCATATTA
TAGTAGAGAAACAAACGTACGAACTGCAAAAGGTACAAGAAAACACCTGT
CGAGTCATATTGATTAATAGTACAGAAGAAAAGTAGTACAAATAATTTGG
AATATGTAGCTCCATGCATGCATGTCGTTTAAGATCTCAACGGTTTGTTT
TTGGTTCTTATTTTCGATATTTTACGTCGTTCAGTACTTTGCAATATGCA
CGACATGATGCGGGGCGGCTACTACGGTGAGATCAAAGGATCACACTCTC
CTCAAACATACATACATCCATACGCCCGCGTGGAGTTAAGAGTATATTAT
CTCGCAGTTTCGCTATTAATCTATAGTGCGGTAACTATATAGTCGATAAG
ATAACTTCTTATATCCTTCTTCCGTAGCTGAAAGCGTGAGAAAGTGAGTA
AGTGGCATTCAAGCATATCGGTTGACCAATTGTAAGAGTGGTGTGCTGAA
CTTGCACCGCGATAAAAAAATCGAAAGGCGAGAACCGGGGAGAGATGGGA
AGATACTTATTAGAGACCACAAGGCAGCAGGCAGGATGGCAAGGTTGCAA
TATGCGGGGTTGGTAACGTAGCACTTTGAGGCCCATCGGCCGTGGGTGAG
ATACAAACAAAAACAAACCAAATAGTTAGAAGTCGGCAAATAGATTTGGA
TTTAACCCCTGACCCACGCAACGCGCTAGACTGAAGTCGTTTGACGCGTG
TTTTCTTACTCCGTGCGTCTTTATTGTTCATATGCCTCCCAACATGAAAA
GTGCCAGTATTTGGTATCAGGTATCAGGTACTAATTTGTTTTACAGAAAA
AATGGCTCTAAATTGACACGTACTGGTACAAAATATTAGTCTCAGGCGCA
TGAGCTTCTTTTTCGCGCACGGTTCCTGGTAGCACGGTGCTGTTCTATAG
TGTATAATCACAAGAAATGGTGAGCTTCCTGATCGAGTCTTCTCCCGTGA
ATTACCCCACTCACCCACCCGCTATTCCTCCCACCCACCCTATTGCTGTC
TCTACTCTGTCGTGCTGCATGCACCAGACTTCCTACCACGATGAAGCTTG
CTCTCGAGTTCTCTTCCATCGCGCTGTTGGCACTGCTCTCGGCCGCGGCT
GCGTCATCCTCAACATCCTCGGATAAAATGGGTGCGTCATCCTCGACTTC
CTCGCAACGAGAAGTGGACCTGGAATGCTACGATGAAGACGAGGAGCAGC
ACCTAACCCAACTCATGGAGAGCGCTTGCGATTACAATATTTTCATGTGC
TGCTGGACGGAGAACGATGGCGAGGGCATAGAGGATAACACTGATGTTTG
CCGCTACACGGACTCCTCTCAGACTACACGTGACTACCCTGGGGATAGCG
AGGGAGCGGTGAACTGTCATGGGTTCGGCTGGCCCAAACAATCCGATTAC
GCTGCATACATCGAGCCCTTATATCGCTACGTGCGCAACTTCGACTACCG
GGGCTACTATGGTTCGTGAGTCCTTACACTCGTACAGTAGTGAGATATTT
CAATATTTTAGTGTAGCAGCGATCATCACACGGGGTTGGTCTCGCAAAAC
TCACGAAACATCTACAGGTCCAAAGGTAACAATGCCCTCTTCCGCCTGGA
ATGCTGCGGATTGTCCAGTTCCGTTCTCTCGGTACTCTCTTTTTAAGTAG
ACGCTAAGGGACTGAAAACCCTCGCCACAGAAGATGTCACTTGTACTTCC
GGCAAATCAATCGTTCGGATTCCTGCGATGTTGAGCGTCACCTCCCCGCC
AATTGTATTATCTTATTGAAGGGTGCCGGACGCGCCGGAGTGCGGGTGTA
TTGAAGACATGCCAGTAGTGAGCCGCGCCGACTGCAGCACCTACAGCAGG
GACGGTCTCACGGAGTGTATGAACAACGACCTCAGCAGGTTCTACACGGC
CGGTCTGGGCAGTTTCGCCGGCGATATGTCGTTCAACCTCGTCGGGACGT
GCGACAACGTCAACGGTCCCGTTTCCTCCGACAGCGAGACGGGAGGGACC
TCCTCGGGGTCAACGACATCCTCCGTTGAAGACGCTACCTCGTTGACGAT
GAACGAAGGGGCAACGACGGTGGACATGAGCCCCGATGTTCCCGAGTACG
ACGAGGATGAGGCACTGGCTGCTCTACTTGATGACACATGCGACTTCAAC
CTCTTCATGTGCTGTTGGACTCAGAACGACGACCAAGGCATGGAGGACAA
CACAGGTGGGATCCAACCCAAGGCGTCTGGGCTGTAATCGCTAACCCTCC
AAAGACATGAAAAAGAATTCGCGACTCTGTTGACGCGAGTTCCTGTACAC
TTTATGCGCGTTCAAGATTTGTGATGCTCGTACTATAAAATATCGATACC
TGTGGTGGGTCAATAGCCAAAGAGTACTTCGATATTGCTTTCAATTTGTC
TGCTCTCATTCCGTTGACCACAAGACTTGCCCATTCTACATTTTCGCGTT
GTGGCAGATGTGTGCCGCTACACCGACAGCACGCACGCAGGTCGCGACTA
CCCCGGCGAAAGCGAGGGAGAGGTGCACTGCCACGGCTTCGGCTGGAATG
AAGGGGCGGACTACCTGACTCAGATTCTAAGCCTCTACCATTTCGTCAGA
CGTTTTGACCACAGGAACCAGAGGGGCTACTTCGGAAGGTAACACCACGG
GTTAGCCTCAACGTGAACAGTCTAGCATGCCTCTGTGGTCCTCGTACAGA
CGAACCCTATTGGCAAAAAGCCTTCTCGGAGGGAATTTGCTTTTCTACTT
TTCCTCCCGAGAAAGACTCGGAATAAAATAAAAACAGCGATAAAAAGGTA
ACGTTCCCAGGACTACGTAAGTTGATGAAACCCACGCCTTTATCGTTCTC
TCCTACGTATCGTCGCGCGTTCGTCCCCATCCTCAGCATCGAGGGTGCAC
CAGAGTGTGCGTGCATCGAGGATATGCCAGTGGTGAGCCGAGCGGACTGC
ACCACGTTTAACAGGGACGGGCTCACGGCGTGTGCCAATAACGACCTCCG
CAGTCACTACAGGGGTAGGATGGATTCCCCCGGAGGGGACCTAGACTTCA
ATCTTGTCGCTACCTGCGACAACGAAAACGCCCCAATTACTACCGACTAC
GCTTACGTCGAGGAGCGCAAGGTCGAGGACACCTACGACGAAGACGACGC
TGTACAAGAGATCCTTGCCAGCTGCGAGTACAACACCTACATGTGCTGCT
GGACGGAGAACGAAGGTCAGGGCATGCAGGACAACACGGACGTGTGCCGC
GTCATTGACGAGTCCGGGGAGATCACCGAGTATCCAGGGGAGAGCGAAGG
AGACGTCCACTGCCACGGTTTTGGCTGGAAGGACGACACCGATTTCCTTA
CGAACAAGCTACCGCTCTACCACTATGTGATCAACTTTGACCACGCGGAC
ACCAGAGGGTACTCCGGAAAGTGAGTGTTAACCTAGCTGCTTCAATCCGA
ACCAAAGGCATTATTTTGTACATAGTTTCCCCCCGACGACAAAGACTTTG
TTACCACCAAGACGTCAAAACTAAGGAGTACATGCGGCCTTAAAACAACA
ATCCACGATTTGGCGCTAGCTCTACCCTGTTTTTCATAGCGCAAGCATAA
CCATAAAAACTGATCACTCGAGTCATGTCTTGTGATGTACTCCATATTAT
TTGGTGAGTTCTTCATGCTGCAGCCCTCAACCGCAAATTTCATCGACATC
ACGACTCAGGCATACTTTCCCCCTCTGTCTTCCCCCCAACGGCTGCCCTG
CAGTGTCCCTGGCGCGCCCCAGTGCGGATGCGTCGAGCACATGCCGGTGG
TGAGCCGCGCGGACTGCACTACCTACAACAGGGACGGTCTTACGGCTTGC
ATGAACAACGACCTCTTCACGCACTACAGGGGCAGGCTGGGCAAGCCGAA
TGGGGACATGGATGTGAACCTCGTCAAGCAATGCAACAACGCGGATGAGA
CTACTTCGGCGAACGAAGACACAACGCCCAGTCCTACCACACCACCGGAT
ACGATATATGCTTCAACTTCCACAGACGGTTCCGCGTAGGCGGTGCGCGG
CTCAGCGCGCGTGTAAGGTACGTGCTCAAGGGGGATCACCACCTCGAGCA
AGAGCTGTGGGTATTGTTGTCCGTCTTTGTGCTTCCGTGTAAATGCACAG
GGTGTTAAAAAGCAATAGCAACCACCCGTCCCTTTGCGCAAGGAACGGGG
GATGGATGTGGTTCTTCTTGAGAGAGCTGTTGAAAACTTTCCTTTAAATT
GATCGTTGCGGAAGCGCAACATCTGAGTCAAATCGATGCGTGCTCACTCC
TTTCCACAGGAAACGTGGCTCGGATATTCTTGGGCGCCTCGACAAGCAAC
TTCGCCTCCCCCGGAGTACTTCTTCCGGACAAAATATAGTGGGCACGGGT
GTTTCTATAGCCCCTCCTCATGCCAGCGACGGTTTCAAAACTGATTACGC
GCCTTTTCTCCTCATTTTTTTTTTGCCGGTCTGATCTGTTTACGTGAATG
TTATTGTAAACACAAGTCTATCACGTTTTTTTTTTCAATTTGGACGCCTG
TAGCGTTGAATATTCTTTAACCTCTGGTTCATGCAGTCGACGGTTTGAAA
GGGGGCTATCGTAGAAACACTCGTACAAGCGTTCTACTCCGTGTTTCCAG
AGAAACAGACGCTAAAGCAGGGTGTTATTTCATGAGAGGTGTCACGCACG
CACCTCACTCGGGCTTTTTTGTTACACGTCCCACAATCCAGGGTGAAATA
GTGCTTCTTTATAGACGGGATCTTTGAGGCTTGATTTGAATCATGCCTCG
CGGCCTGTATGATCGCACGTCGCCTCGGTGTAGAGTAGTGTCGTTTAGAT
ATATTTACTCCAGAATCGATGTCGCGTTATGTATCAAGGAGTACCTCGTG
CTTGTCGATCCGTGCTTCGAGTAGAGTGTGGTGGGGCGGTGGATATCACA
AAGGAGATTCACCAGCAAATAGGTGCACTCCTATCGATGACGAATGTCAT
TCAGAACCAGGAGCTTTAGTCCCTCAGTGGCTTTCCTAGGCCTAACGACT
GGGTTGTTTCTCGTTTCAGGTCGTCTGCCGGTGTGCGCTGAAAGGCCGGA
CACTAAAAGCACCCACTAAGTGGTGCAGCTGTTTACTTTTAGTCCACGAC
CCTTCGGTATGAAGACTGGGGGTCGTGCGTCATGTGTCCTTCTTTGTCCA
GTACCGAGTGTGGTACTTTGGGGTTGTAGTGTAGTCTAGTGTCGTGTAGT
GTGATGTGGGGGTGGCACAGGCGGGGTGCCCCCCTGGCGCTGCAACAAGA
AAACTATATATAATATAATATCCAGCATCAAACTGAGAATCGTTGACAAT
GGGCCGGAGGCGATTATTTATTAGGCGGGTGAGGTACATGGCTAATGCTA
TTTTAACAATGGTCTTGACTGTTTTTCTTATTGATGATGACGCCTGTAAG
CACGAGAGTGTTATTTCCGAACGTTGCTTGCAAGTCTCCTGAGTGCCCTA
CGCAGGCACCACGGCAAGAGGTGCTGGCAATACTCATGTTTTGATGTGAA
CAGGGAGGTAATGGATGGAATATATCGTTGGGAGACCGGCACAATATATT
TTCACGTGGGGGGTTACAGTTCCATTTTTCATCGTGATGTCGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig986:224419..231662+

>mRNA_A-nodosum_M_contig986.10.4 ID=mRNA_A-nodosum_M_contig986.10.4|Name=mRNA_A-nodosum_M_contig986.10.4|organism=Ascophyllum nodosum dioecious|type=CDS|length=1860bp|location=Sequence derived from alignment at A-nodosum_M_contig986:224419..231662+ (Ascophyllum nodosum dioecious)
ATGAAGCTTGCTCTCGAGTTCTCTTCCATCGCGCTGTTGGCACTGCTCTC
GGCCGCGGCTGCGTCATCCTCAACATCCTCGGATAAAATGGGTGCGTCAT
CCTCGACTTCCTCGCAACGAGAAGTGGACCTGGAATGCTACGATGAAGAC
GAGGAGCAGCACCTAACCCAACTCATGGAGAGCGCTTGCGATTACAATAT
TTTCATGTGCTGCTGGACGGAGAACGATGGCGAGGGCATAGAGGATAACA
CTGATGTTTGCCGCTACACGGACTCCTCTCAGACTACACGTGACTACCCT
GGGGATAGCGAGGGAGCGGTGAACTGTCATGGGTTCGGCTGGCCCAAACA
ATCCGATTACGCTGCATACATCGAGCCCTTATATCGCTACGTGCGCAACT
TCGACTACCGGGGCTACTATGGTTCGGTGCCGGACGCGCCGGAGTGCGGG
TGTATTGAAGACATGCCAGTAGTGAGCCGCGCCGACTGCAGCACCTACAG
CAGGGACGGTCTCACGGAGTGTATGAACAACGACCTCAGCAGGTTCTACA
CGGCCGGTCTGGGCAGTTTCGCCGGCGATATGTCGTTCAACCTCGTCGGG
ACGTGCGACAACGTCAACGGTCCCGTTTCCTCCGACAGCGAGACGGGAGG
GACCTCCTCGGGGTCAACGACATCCTCCGTTGAAGACGCTACCTCGTTGA
CGATGAACGAAGGGGCAACGACGGTGGACATGAGCCCCGATGTTCCCGAG
TACGACGAGGATGAGGCACTGGCTGCTCTACTTGATGACACATGCGACTT
CAACCTCTTCATGTGCTGTTGGACTCAGAACGACGACCAAGGCATGGAGG
ACAACACAGATGTGTGCCGCTACACCGACAGCACGCACGCAGGTCGCGAC
TACCCCGGCGAAAGCGAGGGAGAGGTGCACTGCCACGGCTTCGGCTGGAA
TGAAGGGGCGGACTACCTGACTCAGATTCTAAGCCTCTACCATTTCGTCA
GACGTTTTGACCACAGGAACCAGAGGGGCTACTTCGGAAGCATCGAGGGT
GCACCAGAGTGTGCGTGCATCGAGGATATGCCAGTGGTGAGCCGAGCGGA
CTGCACCACGTTTAACAGGGACGGGCTCACGGCGTGTGCCAATAACGACC
TCCGCAGTCACTACAGGGGTAGGATGGATTCCCCCGGAGGGGACCTAGAC
TTCAATCTTGTCGCTACCTGCGACAACGAAAACGCCCCAATTACTACCGA
CTACGCTTACGTCGAGGAGCGCAAGGTCGAGGACACCTACGACGAAGACG
ACGCTGTACAAGAGATCCTTGCCAGCTGCGAGTACAACACCTACATGTGC
TGCTGGACGGAGAACGAAGGTCAGGGCATGCAGGACAACACGGACGTGTG
CCGCGTCATTGACGAGTCCGGGGAGATCACCGAGTATCCAGGGGAGAGCG
AAGGAGACGTCCACTGCCACGGTTTTGGCTGGAAGGACGACACCGATTTC
CTTACGAACAAGCTACCGCTCTACCACTATGTGATCAACTTTGACCACGC
GGACACCAGAGGGTACTCCGGAAATGTCCCTGGCGCGCCCCAGTGCGGAT
GCGTCGAGCACATGCCGGTGGTGAGCCGCGCGGACTGCACTACCTACAAC
AGGGACGGTCTTACGGCTTGCATGAACAACGACCTCTTCACGCACTACAG
GGGCAGGCTGGGCAAGCCGAATGGGGACATGGATGTGAACCTCGTCAAGC
AATGCAACAACGCGGATGAGACTACTTCGGCGAACGAAGACACAACGCCC
AGTCCTACCACACCACCGGATACGATATATGCTTCAACTTCCACAGACGG
TTCCGCGTAG
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