mRNA_A-nodosum_M_contig986.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig986.1.1 vs. uniprot
Match: D7G2N0_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G2N0_ECTSI) HSP 1 Score: 186 bits (473), Expect = 1.090e-53 Identity = 91/155 (58.71%), Postives = 112/155 (72.26%), Query Frame = 1
Query: 97 TCDYNIFMCCWTENDGEGMEDNTDVCRYTD--SSQTTRDYPGDSEGEVHCHGFGWPEKSDYHAYVEPLYHYVRNFDHRDYRGYFGSVPGAPQCGCVEHMPVVSRADCTTYN----RDG-LTACTNNDLFTHYRGRLGRPNGDMDVNLVKQCNNAD 540
TC++N +MCCWTENDG+GM DNTDVCR D S T +YPG+SEGEVHCHGF WPE + Y+ L +V++FDHRD RGYFG++ GAP CGC+E MP VS ADCTTY+ R+G TACTNNDL T Y P G++D NLV +C+NA+
Sbjct: 335 TCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDAT-DKYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEY--PMGELD-NLVGECDNAE 485
BLAST of mRNA_A-nodosum_M_contig986.1.1 vs. uniprot
Match: D7FT55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT55_ECTSI) HSP 1 Score: 186 bits (472), Expect = 1.120e-53 Identity = 89/155 (57.42%), Postives = 107/155 (69.03%), Query Frame = 1
Query: 97 TCDYNIFMCCWTENDGEGMEDNTDVCRYTD--SSQTTRDYPGDSEGEVHCHGFGWPEKSDYHAYVEPLYHYVRNFDHRDYRGYFGSVPGAPQCGCVEHMPVVSRADCTTYNRDG-----LTACTNNDLFTHYRGRLGRPNGDMDVNLVKQCNNAD 540
+C +N +MCCWTENDGEGM DNTDVCR D S T ++PGDSEGEVHCHGF WPE + Y+ L +V+NFDHRD RGY+G++ GAP CGC+E MPVVS ADCTTY+ D TACT NDL T Y P G++ NLV C+NA+
Sbjct: 321 SCSHNTYMCCWTENDGEGMADNTDVCRVVDYPSMGETLEFPGDSEGEVHCHGFVWPEDAT-DKYIHLLSQFVQNFDHRDRRGYYGNIEGAPMCGCIEEMPVVSEADCTTYDTDPEREGKFTACTKNDLRTRYEAEY--PTGEL-ANLVDTCDNAE 471
BLAST of mRNA_A-nodosum_M_contig986.1.1 vs. uniprot
Match: D7G2N2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N2_ECTSI) HSP 1 Score: 182 bits (462), Expect = 1.920e-50 Identity = 89/155 (57.42%), Postives = 110/155 (70.97%), Query Frame = 1
Query: 97 TCDYNIFMCCWTENDGEGMEDNTDVCRYTD--SSQTTRDYPGDSEGEVHCHGFGWPEKSDYHAYVEPLYHYVRNFDHRDYRGYFGSVPGAPQCGCVEHMPVVSRADCTTYN----RDG-LTACTNNDLFTHYRGRLGRPNGDMDVNLVKQCNNAD 540
TC++N +MCCWTENDG+GM DNTDVCR D S T +YPG+SEGEVHCHGF WPE + Y+ L +V++FDHRD RGYFG++ GAP CGC+E MP VS ADCTTY+ R+G TACT NDL T Y P G++D NLV +C+N +
Sbjct: 292 TCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDAT-DKYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTKNDLRTRYEEEY--PMGELD-NLVGECDNEE 442
BLAST of mRNA_A-nodosum_M_contig986.1.1 vs. uniprot
Match: D7FT53_ECTSI (Imm downregulated 17 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT53_ECTSI) HSP 1 Score: 166 bits (420), Expect = 3.770e-49 Identity = 76/164 (46.34%), Postives = 110/164 (67.07%), Query Frame = 1
Query: 52 YDEDEVQHITQLMESTCDYNIFMCCWTEND-GEGMEDNTDVCRYTDSSQTTRDYPGDSEGEVHCHGFGWPEKSDYHAYVEPLYHYVRNFDHRDYRG-YFGSVPGAPQCGCVEHMPVVSRADCTTYNRDGLTACTNNDLFTHYRGRLGRPNGDMDVNLVKQCNNA 537
YDED + +L++ TC+++ +MCC+T +D GEG+ NTDVC + PGDSEG V+CHGF WPE +D + ++ PLYHYV+N + G Y+G+V GAP+CGC+E MP VS A+C+ ++ DG+ C L++ Y GRL P G+M+ NLV+ C+NA
Sbjct: 24 YDED--LEVAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSVPSEGL---EMPGDSEGPVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRLDAPYGEMEHNLVRSCDNA 182
BLAST of mRNA_A-nodosum_M_contig986.1.1 vs. uniprot
Match: D7FT54_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT54_ECTSI) HSP 1 Score: 171 bits (434), Expect = 1.550e-48 Identity = 78/166 (46.99%), Postives = 112/166 (67.47%), Query Frame = 1
Query: 52 YDEDEVQHITQLMESTCDYNIFMCCWTENDG-EGMEDNTDVCRYTDSSQ--TTRDYPGDSEGEVHCHGFGWPEKSDYHAYVEPLYHYVRNFDHRDYRGYFGSVPGAPQCGCVEHMPVVSRADCTTYNRDGLTACTNNDLFTHYRGRLGRPNGDMDVNLVKQCNNAD 540
YDED H+ L+ C++N +MCCWT NDG +GM NTDVCR D + + ++P DSEG V+CHGFGW + +D + + PLYH V N + GY+G+V GAPQCGC+E MPVVS ++C+ ++ DG+T C + L+++Y R+ PNG ++ NLV+ C+N D
Sbjct: 98 YDED--VHVAYLLPEMCEWNTYMCCWTGNDGPDGMTSNTDVCRVWDYPEEGNSLEFPRDSEGSVYCHGFGWADGADVNTNILPLYHSVINTGRTEEGGYYGNVEGAPQCGCLEEMPVVSFSECSRFDGDGITDCGEHGLYSNYVSRIDEPNGPLEDNLVRICDNYD 261
BLAST of mRNA_A-nodosum_M_contig986.1.1 vs. uniprot
Match: A0A6H5L9G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9G6_9PHAE) HSP 1 Score: 159 bits (403), Expect = 1.330e-46 Identity = 73/164 (44.51%), Postives = 107/164 (65.24%), Query Frame = 1
Query: 52 YDEDEVQHITQLMESTCDYNIFMCCWTEND-GEGMEDNTDVCRYTDSSQTTRDYPGDSEGEVHCHGFGWPEKSDYHAYVEPLYHYVRNFDHRDYRG-YFGSVPGAPQCGCVEHMPVVSRADCTTYNRDGLTACTNNDLFTHYRGRLGRPNGDMDVNLVKQCNNA 537
YDED + +L++ TC+++ +MCC+T +D GEG+ NTDVC +EG V+CHGF WP+ +D + ++ PLYHYV+N + G Y+GSV GAP+CGC+E MP VS A+C+ ++ DG+ C L++ Y GRLG P G+M+ NLV+ C+NA
Sbjct: 31 YDED--LEVAKLLDDTCEWDTYMCCFTNHDSGEGVTANTDVCSVP------------NEGSVYCHGFAWPDGADVNNHILPLYHYVKNIGRTEEEGGYYGSVEGAPECGCIEEMPQVSFAECSRFDIDGIVGCGEGGLYSQYNGRLGAPYGEMEHNLVRSCDNA 180
BLAST of mRNA_A-nodosum_M_contig986.1.1 vs. uniprot
Match: A0A6H5JT81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT81_9PHAE) HSP 1 Score: 159 bits (401), Expect = 3.500e-45 Identity = 68/158 (43.04%), Postives = 102/158 (64.56%), Query Frame = 1
Query: 76 ITQLMESTCDYNIFMCCWTENDG-EGMEDNTDVCRYTDSSQT--TRDYPGDSEGEVHCHGFGWPEKSDYHAYVEPLYHYVRNFDHRDYRGYFGSVPGAPQCGCVEHMPVVSRADCTTYNRDGLTACTNNDLFTHYRGRLGRPNGDMDVNLVKQCNNAD 540
+ ++ TC++N +MCCWT +DG +GM N DVCR + + + P D EG V+CHGF W + +D +++ PLYHYV N + D GY+G+V G P CGC+E MPVVS A C+ + +G+ C +N L + Y+ +L P G+M+ NLV++C+N D
Sbjct: 6 VATILPETCEWNTYMCCWTGHDGSKGMYGNADVCRVLNYPEEGDVLELPRDDEGPVYCHGFAWADGADIDSHILPLYHYVTNVNRTDDGGYYGNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKYKLDEPKGEMEYNLVRECDNED 163
BLAST of mRNA_A-nodosum_M_contig986.1.1 vs. uniprot
Match: A0A6H5L319_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L319_9PHAE) HSP 1 Score: 159 bits (402), Expect = 1.350e-43 Identity = 75/172 (43.60%), Postives = 108/172 (62.79%), Query Frame = 1
Query: 49 CYDEDEVQHITQLMESTCDYNIFMCCWTENDG-EGMEDNTDVCRYTDSSQTTRDY--PGDSEGEVHCHGFGWPEKSDYHAYVEPLYHYVRNFDHRDYRGYF-----GSVPGAPQCGCVEHMPVVSRADCTTYNRDGLTACTNNDLFTHYRGRLGRPNGDMDVNLVKQCNNAD 540
C +E + +L++STC+++ +MCCWT NDG +GM N+DVCR D + + P +SEG V CHGF W E +D ++ PLYHYV+N + G++ SV G P+CGC+E +P VS ++C+ Y+ +G+ C NN L + YRG LG P G MD NLV+ C+N D
Sbjct: 29 CSTYEEHVEVAKLLDSTCEWDPYMCCWTGNDGADGMTANSDVCRVLDYPEEGDSFEMPRESEGFVCCHGFAWAEGADVDTHILPLYHYVKNVGRTEEAGFYEMKLPDSVEGTPECGCIEEIPSVSCSECSRYSWEGIAGCGNNGLLSQYRGCLGEPCGPMDDNLVRTCDNED 200
BLAST of mRNA_A-nodosum_M_contig986.1.1 vs. uniprot
Match: D7G8D2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D2_ECTSI) HSP 1 Score: 135 bits (340), Expect = 8.760e-37 Identity = 76/182 (41.76%), Postives = 101/182 (55.49%), Query Frame = 1
Query: 4 AATSSTSSEREVDLECYDEDEVQHITQLMESTCDYNIFMCCWTENDGEGMEDNTDVCRYTDSSQTTRDYPGDSEGEVHCHGFGWPEKSDYHAYVEPLYHYVRNFDHRDYRGYFGSVPGAPQCGCVEHMPVVSRADCTTYNRDGLT-----ACTNNDLFTHYRGRLGRPNGDMDVNLVKQCNN 534
A TSS ++ E Y DE + + + CDYN +MCCW +G ++DNTDVC Y ++PGDSEG VHCHGF WPE + +++ L V +H D + Y G++PGAP C C+E MP VSRADCT Y + L AC+ NDL Y+ P G LVK+C+N
Sbjct: 27 ARTSSAFADAENSFYDYSGDEFELVKNFDFNQCDYNTWMCCWDGRNGLAVKDNTDVCSYRGE-----EFPGDSEGPVHCHGFVWPENAS-DDFIKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLRRAYKELY--PTGRGRDLLVKKCDN 200
BLAST of mRNA_A-nodosum_M_contig986.1.1 vs. uniprot
Match: D7G8C5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C5_ECTSI) HSP 1 Score: 136 bits (343), Expect = 1.690e-36 Identity = 76/182 (41.76%), Postives = 101/182 (55.49%), Query Frame = 1
Query: 4 AATSSTSSEREVDLECYDEDEVQHITQLMESTCDYNIFMCCWTENDGEGMEDNTDVCRYTDSSQTTRDYPGDSEGEVHCHGFGWPEKSDYHAYVEPLYHYVRNFDHRDYRGYFGSVPGAPQCGCVEHMPVVSRADCTTYNRDGLT-----ACTNNDLFTHYRGRLGRPNGDMDVNLVKQCNN 534
A TSS ++ E Y DE + + + CDYN +MCCW +G ++DNTDVC Y ++PGDSEG VHCHGF WPE + +++ L V +H D + Y G++PGAP C C+E MP VSRADCT Y + L AC+ NDL Y+ P G LVK+C+N
Sbjct: 91 ARTSSAFADAENSFYDYSGDEFERVKNFDFNQCDYNTWMCCWDGRNGLAVKDNTDVCSYRGE-----EFPGDSEGPVHCHGFVWPENAS-DDFIKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLRRAYKELY--PTGRGRDLLVKKCDN 264 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig986.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig986.1.1 >prot_A-nodosum_M_contig986.1.1 ID=prot_A-nodosum_M_contig986.1.1|Name=mRNA_A-nodosum_M_contig986.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=181bp MAATSSTSSEREVDLECYDEDEVQHITQLMESTCDYNIFMCCWTENDGEGback to top mRNA from alignment at A-nodosum_M_contig986:41438..44550+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig986.1.1 ID=mRNA_A-nodosum_M_contig986.1.1|Name=mRNA_A-nodosum_M_contig986.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3113bp|location=Sequence derived from alignment at A-nodosum_M_contig986:41438..44550+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig986:41438..44550+ >mRNA_A-nodosum_M_contig986.1.1 ID=mRNA_A-nodosum_M_contig986.1.1|Name=mRNA_A-nodosum_M_contig986.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=543bp|location=Sequence derived from alignment at A-nodosum_M_contig986:41438..44550+ (Ascophyllum nodosum dioecious)back to top |