mRNA_A-nodosum_M_contig984.19.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig984.19.1
Unique NamemRNA_A-nodosum_M_contig984.19.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig984.19.1 vs. uniprot
Match: D8LDN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN9_ECTSI)

HSP 1 Score: 333 bits (855), Expect = 6.700e-106
Identity = 206/487 (42.30%), Postives = 280/487 (57.49%), Query Frame = 1 
Query:    1 VTEPEECESGSPRVPDYLQTKNTLPDWEYLGAAWKACYEGYRCEAWWGSLDGTTVTDEPIVLDAPLDWPDCCALCSKNDKNAL----ASSECVGWSFEPSTGGCQLMSTVSSTSGETGWGY---NKTVSGYPGYFEPPVSGCWSRTQFDLCRNMDLALIIPGCFVSFIGLALILWT--WTTESSRSRHLRNL-LKDTRGSRLEKVRPVQVKVERFVTSYPGKYKSEYGYGYTFTGTFATRDGRLMEVPSRGTVIRRDRKGAPTERYLEWEMLKVLFGTNLQPLSDPAVAANRLQTPDGLRSTFQLLASRVDKQLLDDQFSPIGFFRYSGTQTRSSPEV-----GSIGGRFHCLLLIN-DNNGRSAQASPAPT-VLLVGILDEDRITCVTAALRGYLRYTISGGLFCLFVGISLFTTLGVVLLTNEAAQVMASFTFPATNYRKGAYAGFAFCFCIPLAIWLRGLYRRAELMRLAKAFPGVAESGQEVS 1410
            VT P +C   SP +P+  +T NTLP+WE LGAAWK CY+GYRCEAWWG L+G+    EP+VLDAPLDWPDCCALCS +          +S CV WSF+PSTG CQ MSTV+  S +  WG    N T+SGYPGYFE P++ CW R+Q+DLC N + A IIPG  V+FI L   +W   +   S+R+  LR L ++  + SRL KV   +V   + V S  GK  ++  Y  T+ GTF TRDG +  +P      RR  K     R +E  ML VL  T   P +DP++A  R +TPDGLR+ F  +   V ++  +   S   F+R   +     P V      ++  RF C+LL+  +  GR+      PT VLLVGIL EDRITCV   + G          FC  +  +L   + + LLTNEAAQ MA++TF   ++R GA  G   C C+PL++++    +  +L+R  +  P VAES + ++
Sbjct:   54 VTSPPDCPGESPYIPEGFKTDNTLPEWEALGAAWKECYDGYRCEAWWGGLEGSP-DGEPVVLDAPLDWPDCCALCSGSGSXXXXXXXTTSTCVAWSFDPSTGSCQRMSTVAEPSYDYSWGAWNSNNTISGYPGYFEAPLTDCWGRSQYDLCVNTNAAFIIPGVIVAFISLC-CMWASGFCAPSARAGLLRELAIEQPQSSRLVKVACAEVACTKTVKS-TGKGGTKITY--TYNGTFVTRDGAVFNLPP---PTRRP-KMHEASRRIEKRMLSVLHNTKRNPRADPSLA-RRCETPDGLRAEFSKMVRAVPRKP-EASRSGGSFYR---SHVLGHPNVPVERDAAVDHRFDCILLVGTEEPGRT------PTKVLLVGILGEDRITCVGEDVLGASVADFCCASFCFVLAAALLFIMCITLLTNEAAQNMAAWTFEG-DHRVGAIIGLVLCTCVPLSLFVWKCRKSGKLLRSIRECPLVAESDRVIN 519
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BLAST of mRNA_A-nodosum_M_contig984.19.1 vs. uniprot
Match: A0A6H5KRC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRC3_9PHAE)

HSP 1 Score: 253 bits (647), Expect = 3.260e-76
Identity = 177/476 (37.18%), Postives = 229/476 (48.11%), Query Frame = 1 
Query:    1 VTEPEECESGSPRVPDYLQTKNTLPDWEYLGAAWKACYEGYRCEAWWGSLDGTTVTDEPIVLDAPLDWPDCCALCSK--NDKNALASSECVGWSFEPSTGGCQLMSTVSSTSGETGWG---YNKTVSGYPGYFEPPVSGCWSRTQFDLCRNMDLALIIPGCFVSFIGLALILWTWTTESSRSRHLRNLLKDTRGSRLEKVRPVQVKVERFVTSYPGKYKSEYGYGYTFTGTFATRDGRLMEVPSRGTVIRRDRKGAPTERY-LEWEMLKVLFGTNLQPLSDPAVAANRLQTPDGLRSTFQLLASRVDKQLLDDQFSPIGFFRYSGTQTRSSPEVGSIGGRFHCLLLINDNNGRSAQASPAPTVLLVGILDEDRITCVTAALRGYLRYTISGGLFCLFVGISLFTTLGVVLLTNEAAQVMASFTFPATNYRKGAYAGFAFCFCIPLAIWLRGLYRRA-ELMRLAKAFPGVAESGQEV 1407
            VT P +C   S  +P+  +T NTLP+WE  GAAWK   E  RC+AWWG L G+    EP+VLDAPLDWPDCCALCS   +D  A   + C  WSF+PSTG CQ MS V STS    WG   Y  TV GYPGYFE P++ CWSR ++DLC N  + LI+PG FV+F  +  + +    +    +  +  +K                                 Y YT+ GTFA  DG L  +P    +       AP   + +E  ML+VL+ TNL P +DP VA+    + D           +  +Q+                   S+P V               ++ R         VLLVGIL EDRITC+   L G      S   FCL +   +  T+ V LLTNEAAQ MA +TF   +YR GA  G     C+PL+      YR + +L RL K  P VAES + V
Sbjct:   33 VTSPPDCPGDSLYIPEGFKTDNTLPEWEDEGAAWK---EWDRCDAWWGGLGGSP-NGEPVVLDAPLDWPDCCALCSGGGDDDGANTETTCAAWSFDPSTGSCQRMSAVESTSQNNTWGAWQYKGTVKGYPGYFEAPINDCWSRMKYDLCVNPSMGLIVPGMFVAFWSILCMYFPVGCQKLAQKSGKGGIK---------------------------------YFYTYKGTFAACDGALFVLPPPTRL-----SNAPRSSHKIEKRMLRVLYNTNLNPRADPGVASRAGDSCD-----------KRKRQI-------------------SNPIV--------------PHDAR---------VLLVGILGEDRITCIDHELLGSSSCCRSCASFCLVLAAVMLVTMCVALLTNEAAQHMAEWTFEG-DYRIGAVVGLMLRSCVPLSFAWN--YRNSNKLFRLVKDCP-VAESDRVV 409
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BLAST of mRNA_A-nodosum_M_contig984.19.1 vs. uniprot
Match: A0A6H5K6X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6X7_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 1.740e-33
Identity = 67/130 (51.54%), Postives = 84/130 (64.62%), Query Frame = 1 
Query:    1 VTEPEECESGSPRVPDYLQTKNTLPDWEYLGAAWKACYEGYRCEAWWGSLDGTTVTDEPIVLDAPLDWPDCCALCSKNDKN----ALASSECVGWSFEPSTGGCQLMSTVSSTSGE---TGWGYNKTVSG 369
            VT P +    SP +P+  +T NTLP  E  GAAWK CY+G RC+AWWG L+G+    EP+VLDAPLDWPDCCALC+    N    +  +S CV WSF+PSTG CQ M TV  TS +   T W  + T++G
Sbjct:   13 VTSPPDFPGESPYIPEGFKTDNTLPLREANGAAWKECYDGNRCDAWWGGLEGSP-DGEPVVLDAPLDWPDCCALCNGGGDNDGDGSGTNSTCVAWSFDPSTGWCQRMPTVEETSYDYSWTTWQNSNTING 141
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig984.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LDN9_ECTSI6.700e-10642.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRC3_9PHAE3.260e-7637.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6X7_9PHAE1.740e-3351.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig984contigA-nodosum_M_contig984:282833..284576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1410
Hectar predicted targeting categoryother localisation
Exons2
Cds size1410
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870518.1061914-CDS-A-nodosum_M_contig984:282832..2839001680870518.1061914-CDS-A-nodosum_M_contig984:282832..283900Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig984 282833..283900 +
1680870518.1170537-CDS-A-nodosum_M_contig984:284234..2845761680870518.1170537-CDS-A-nodosum_M_contig984:284234..284576Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig984 284235..284576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig984.19.1prot_A-nodosum_M_contig984.19.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig984 282833..284576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig984.19.1

>prot_A-nodosum_M_contig984.19.1 ID=prot_A-nodosum_M_contig984.19.1|Name=mRNA_A-nodosum_M_contig984.19.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=470bp
VTEPEECESGSPRVPDYLQTKNTLPDWEYLGAAWKACYEGYRCEAWWGSL
DGTTVTDEPIVLDAPLDWPDCCALCSKNDKNALASSECVGWSFEPSTGGC
QLMSTVSSTSGETGWGYNKTVSGYPGYFEPPVSGCWSRTQFDLCRNMDLA
LIIPGCFVSFIGLALILWTWTTESSRSRHLRNLLKDTRGSRLEKVRPVQV
KVERFVTSYPGKYKSEYGYGYTFTGTFATRDGRLMEVPSRGTVIRRDRKG
APTERYLEWEMLKVLFGTNLQPLSDPAVAANRLQTPDGLRSTFQLLASRV
DKQLLDDQFSPIGFFRYSGTQTRSSPEVGSIGGRFHCLLLINDNNGRSAQ
ASPAPTVLLVGILDEDRITCVTAALRGYLRYTISGGLFCLFVGISLFTTL
GVVLLTNEAAQVMASFTFPATNYRKGAYAGFAFCFCIPLAIWLRGLYRRA
ELMRLAKAFPGVAESGQEVS
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mRNA from alignment at A-nodosum_M_contig984:282833..284576+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig984.19.1 ID=mRNA_A-nodosum_M_contig984.19.1|Name=mRNA_A-nodosum_M_contig984.19.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1744bp|location=Sequence derived from alignment at A-nodosum_M_contig984:282833..284576+ (Ascophyllum nodosum dioecious)
GTGACTGAGCCCGAGGAATGCGAAAGTGGAAGCCCGCGCGTGCCCGACTA
CTTGCAAACAAAAAACACTCTACCAGATTGGGAATATTTAGGCGCAGCTT
GGAAGGCGTGCTACGAAGGGTACCGCTGCGAGGCCTGGTGGGGAAGCTTG
GACGGAACTACCGTGACTGATGAGCCAATCGTGCTCGACGCACCACTCGA
CTGGCCAGACTGTTGTGCGCTATGCAGTAAGAACGATAAAAACGCTCTGG
CGTCCTCGGAGTGCGTCGGGTGGAGCTTCGAGCCGTCGACGGGTGGGTGC
CAACTCATGTCCACCGTGTCTTCGACGAGTGGGGAGACGGGTTGGGGCTA
TAACAAGACCGTTAGCGGGTATCCCGGCTACTTTGAGCCACCCGTTAGCG
GATGTTGGTCGAGGACTCAATTCGACCTGTGCCGCAACATGGACCTGGCG
CTAATCATTCCTGGTTGTTTCGTGTCGTTCATCGGGTTAGCCTTGATCTT
GTGGACTTGGACCACGGAATCGTCGAGATCGAGACACCTCAGGAATTTGC
TCAAGGATACTCGTGGTTCAAGACTGGAGAAAGTGAGACCCGTGCAAGTC
AAGGTCGAGAGATTTGTCACATCATACCCAGGAAAGTACAAATCAGAATA
CGGGTATGGATACACCTTCACAGGTACATTTGCGACCCGCGACGGCAGGC
TGATGGAGGTTCCTTCAAGAGGCACGGTCATTCGGAGGGACAGGAAGGGA
GCGCCAACAGAGAGATACCTCGAGTGGGAAATGTTGAAAGTGTTGTTTGG
TACAAACCTGCAGCCCTTGTCGGATCCCGCGGTGGCAGCCAATAGACTTC
AAACGCCAGATGGCCTGCGGTCGACATTCCAGCTTCTCGCATCGAGGGTA
GATAAGCAACTACTGGATGATCAATTTAGTCCAATCGGGTTTTTTCGTTA
TTCCGGGACGCAGACGCGCTCAAGCCCTGAGGTGGGGAGTATTGGCGGCC
GCTTCCACTGCTTGCTACTGATAAACGACAACAATGGTCGCTCGGCGCAA
GCGTCGCCCGCCCCCACGGTAAAACACTGTGCATTGTGGACTGGGAATGA
CTTGGATCAATATTATAGACGATAAATTGCGTTGTCAATCGAGCAAGGGC
GTATTCTCGTAGAATGGCAAACAGTTGCCTTGATTTGAGCATTTCTCTAT
ATTCTATTGGTCGGGTTACTACATGGCAAACAGCAACGAAAAGTCCGATT
AATACTTTTTTGTAGTACAAAAAGAATACGATGTCGTCCATCCATACACA
TGAGTCCGTTCTCCTTTTCCTTGTCCACAAGACCACCAAACTCTGACGTG
GTCATTTCTCTTGCACCGGCCTCCGCTCGTCTTCGTTGCTACGTGCGCTT
AGGTTCTTCTTGTGGGTATCCTTGACGAGGACCGTATCACGTGTGTAACG
GCTGCATTGCGTGGGTACCTCAGATACACGATTTCGGGGGGCCTCTTCTG
CCTCTTTGTTGGGATCTCACTTTTCACAACTTTAGGCGTGGTACTCCTTA
CCAACGAGGCAGCGCAGGTAATGGCATCCTTCACCTTCCCCGCGACGAAC
TATCGCAAGGGTGCCTACGCTGGCTTCGCATTCTGCTTCTGTATCCCGCT
CGCCATATGGTTGCGGGGACTTTATAGGAGGGCAGAACTTATGCGCCTGG
CCAAGGCCTTCCCCGGGGTTGCAGAATCGGGCCAAGAGGTTTCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig984:282833..284576+

>mRNA_A-nodosum_M_contig984.19.1 ID=mRNA_A-nodosum_M_contig984.19.1|Name=mRNA_A-nodosum_M_contig984.19.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1410bp|location=Sequence derived from alignment at A-nodosum_M_contig984:282833..284576+ (Ascophyllum nodosum dioecious)
GTGACTGAGCCCGAGGAATGCGAAAGTGGAAGCCCGCGCGTGCCCGACTA
CTTGCAAACAAAAAACACTCTACCAGATTGGGAATATTTAGGCGCAGCTT
GGAAGGCGTGCTACGAAGGGTACCGCTGCGAGGCCTGGTGGGGAAGCTTG
GACGGAACTACCGTGACTGATGAGCCAATCGTGCTCGACGCACCACTCGA
CTGGCCAGACTGTTGTGCGCTATGCAGTAAGAACGATAAAAACGCTCTGG
CGTCCTCGGAGTGCGTCGGGTGGAGCTTCGAGCCGTCGACGGGTGGGTGC
CAACTCATGTCCACCGTGTCTTCGACGAGTGGGGAGACGGGTTGGGGCTA
TAACAAGACCGTTAGCGGGTATCCCGGCTACTTTGAGCCACCCGTTAGCG
GATGTTGGTCGAGGACTCAATTCGACCTGTGCCGCAACATGGACCTGGCG
CTAATCATTCCTGGTTGTTTCGTGTCGTTCATCGGGTTAGCCTTGATCTT
GTGGACTTGGACCACGGAATCGTCGAGATCGAGACACCTCAGGAATTTGC
TCAAGGATACTCGTGGTTCAAGACTGGAGAAAGTGAGACCCGTGCAAGTC
AAGGTCGAGAGATTTGTCACATCATACCCAGGAAAGTACAAATCAGAATA
CGGGTATGGATACACCTTCACAGGTACATTTGCGACCCGCGACGGCAGGC
TGATGGAGGTTCCTTCAAGAGGCACGGTCATTCGGAGGGACAGGAAGGGA
GCGCCAACAGAGAGATACCTCGAGTGGGAAATGTTGAAAGTGTTGTTTGG
TACAAACCTGCAGCCCTTGTCGGATCCCGCGGTGGCAGCCAATAGACTTC
AAACGCCAGATGGCCTGCGGTCGACATTCCAGCTTCTCGCATCGAGGGTA
GATAAGCAACTACTGGATGATCAATTTAGTCCAATCGGGTTTTTTCGTTA
TTCCGGGACGCAGACGCGCTCAAGCCCTGAGGTGGGGAGTATTGGCGGCC
GCTTCCACTGCTTGCTACTGATAAACGACAACAATGGTCGCTCGGCGCAA
GCGTCGCCCGCCCCCACGGTTCTTCTTGTGGGTATCCTTGACGAGGACCG
TATCACGTGTGTAACGGCTGCATTGCGTGGGTACCTCAGATACACGATTT
CGGGGGGCCTCTTCTGCCTCTTTGTTGGGATCTCACTTTTCACAACTTTA
GGCGTGGTACTCCTTACCAACGAGGCAGCGCAGGTAATGGCATCCTTCAC
CTTCCCCGCGACGAACTATCGCAAGGGTGCCTACGCTGGCTTCGCATTCT
GCTTCTGTATCCCGCTCGCCATATGGTTGCGGGGACTTTATAGGAGGGCA
GAACTTATGCGCCTGGCCAAGGCCTTCCCCGGGGTTGCAGAATCGGGCCA
AGAGGTTTCT
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