mRNA_A-nodosum_M_contig983.19.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig983.19.1
Unique NamemRNA_A-nodosum_M_contig983.19.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig983.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig983contigA-nodosum_M_contig983:189643..192939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size299
Hectar predicted targeting categoryother localisation
Exons3
Cds size267
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870517.2514236-UTR-A-nodosum_M_contig983:189642..1896741680870517.2514236-UTR-A-nodosum_M_contig983:189642..189674Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig983 189643..189674 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870517.264544-CDS-A-nodosum_M_contig983:189674..1897211680870517.264544-CDS-A-nodosum_M_contig983:189674..189721Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig983 189675..189721 +
1680870517.276958-CDS-A-nodosum_M_contig983:190002..1901441680870517.276958-CDS-A-nodosum_M_contig983:190002..190144Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig983 190003..190144 +
1680870517.2877333-CDS-A-nodosum_M_contig983:192861..1929391680870517.2877333-CDS-A-nodosum_M_contig983:192861..192939Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig983 192862..192939 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig983.19.1prot_A-nodosum_M_contig983.19.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig983 189675..192939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig983.19.1

>prot_A-nodosum_M_contig983.19.1 ID=prot_A-nodosum_M_contig983.19.1|Name=mRNA_A-nodosum_M_contig983.19.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=89bp
MIQALKNNPGSPALKMNKNKRARFGIASPSKDACLGYIDHFAEVYGQLMP
HENATYLYLGSKQELYDDFAEERRLAGEYTISYPYFTKI
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mRNA from alignment at A-nodosum_M_contig983:189643..192939+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig983.19.1 ID=mRNA_A-nodosum_M_contig983.19.1|Name=mRNA_A-nodosum_M_contig983.19.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3297bp|location=Sequence derived from alignment at A-nodosum_M_contig983:189643..192939+ (Ascophyllum nodosum dioecious)
TTTTCCGACGGGCTTTCGACGTCAGCAACAACATGATACAAGCTCTCAAG
AACAACCCCGGTTCTCCTGCGTTGAAAATGTGAGATTATTTTGAAATCAT
CACTCTCTACATATGGCGGTGTTTATGATTTGATCGGCAAATTGATTCGA
TCTGAAAATGTGTACATACATGCATGATATGACCAGCCTCTCTCTCGGTG
TGAACGCCTTCTGTACGCTGCTGCTGCTGCTGCTGCTGCTGCTGGCTTTG
TTGCGTGCATGACGTAGCACGCAACCCTCTTACCTTGAACTTGTACCGAT
CCAAGTGCAGCGCACATACATACTCAGAGATATGTCGCATTGCCGCTTAA
TTTCTTGCAGGAACAAGAACAAGCGGGCTCGATTCGGCATAGCATCTCCT
TCCAAGGATGCGTGTCTAGGTTACATCGATCACTTCGCAGAGGTGTACGG
TCAGCTGATGCCGCACGAGAACGCAACGTATCTCTACCTCGGCAGCAAAC
AGGTGAGGCCCGTCTTTTTTGTTTTTCGAAGAAAGATCAAAACGCGCCTA
TTTTGAAATGAGTACAGTACCTACTCTTCTACAGAATCTTCTAGGGTTAT
GAAAGTACAGAGTTATAATAATTTCACAATACGCTGAATGTGAGAAACTA
CAACAGGGTACCGGCGGTTGGGTCATGGAAAAGTTAAATAATTAGTACAG
GATGTAAATAGTTTTTACTTTGTTCTTGAGCCTGATGACGGCGATGCTTC
GCCCTTCTTCCTCACTCAACGTTTCTGCCACACAAGACACTCTGACAAGC
CTGAGGTCCAGCCTGTGAGTGAGCCTGAGAAACTGCATAGTTGTGTCCTG
TTCTGAGTCAGAGTTGGGCAAGCCTGAAGTAGACTTTAGTGTGGTTGCCA
CTTTAGCTGCGATCGTAATGTGTAACGGGCAAGCTTGAAGTAGATTATAG
TGGTCGTATTACAAGTTAGTTCAGCTGCGTTGTTAGCGAAACTTCGTATC
GTCTTTTGTGCTCTTTTTATGTGTGAAAAAACTAGTAAAATATATAGTGT
AGGACCTTATTACCTGAGACATTCCAGCCGGTTTACCCAGACGCGTGCTC
TACACGCTGAGGAGGAGCCGTACCAATAAGTAAAAAGGTAATCAGGTGAC
ACAGGAATTACGAACTCGTGAGAGAGGTCTCAACACCTAGGTAGACCTCC
CACGATCCCTCGTTTATGTCTTTACATTAAAAACCGTTCTGACCGCTATC
CAAAGAAACGTATTTCCAGTGTCACAAACAAAAGCTATCAAATCACACGT
ATGAATAGTCCACCATACTCGGGACGAATCCCGTACGTAAGCACCAGATT
CAGCCTGGGTGTGGAGATGAACAGGCTGACGCGGGACAGGACGGCTGAAC
CCGTCTCGCGAGACCAAACTCTCAGGCACGCACAGGGACAGGGGATTATG
CTTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCAACCTTACCGGTTG
ATCCATACTCTGCCATATGGATGACCATACATACATACATTGTGATAGCA
TTGGAGCTCGTGATATATTTATGGGGGACGGCAGTTCGGAATGAAAGAGT
ACCCATGTCGGGCTTCGCTGGACGTGTACACTACTCATGAAATATGTACA
AGCCATTGATCCCACCTAAACGTTTCGATATTTTTTCACCCATAATAACC
GGGGATGCTCACAAGTTCTAAGTGTGCTTCGATTTTTCTTTAAAAAGGGC
CTCTCTGTTCCCCTTTCAATCCTTAACCCAAAATACAACACGTAAAAAAA
GTTGAACATGTACTGAACAATATTGTATGAAGTTTCCTATGGTATAGCGG
GCGTGCTGTTGAATGGTAATGTTTTGTCATTTTTTTTATACCATGCTTGT
TCGTGTACTACATTGCCTCTGTTTGTTTTTACTGGGGGATGCTCAGAAGG
TCTAGGCGCGTTCTGATTTACCTTTAAATACCATGTCATGTAGTGGCTTT
GTATTTATAGCCCATCATGTTATAGTATATTATTGCTACCATGTGTGATA
TTGTGCTACATTGTTTTGGTTTTACTGTATTTTCTTGTATGTTGCATGGC
GGTTAATGTAAGCTTACAGTATTACGGGGGGCTTCTCCCCGACATTATTA
TACTGTTGACCCAAGGTAATTTCCATCGGGGAACCCGTTAATACAACATG
AAGAGGTTTTGCTTTTGCAGCCTTTGCTCCCACTCACTAAACGTCTTAAA
ATCCCCGCCCCTTGACTGGGGGATGCTCAGAAGGACGTTATAGTTGTAAT
AGTGTACGATCATAAGTGTCACCGAATGTAAGAACGTTGTGTTCTTACAC
GGTTGGCAACAATGTTACATAACGTTTTACTCCACGCCCATAAGGACGTT
ATACTGTGTTAGCTACATGCATTCAGTAATAAGTGTTTGTATTGTTCTCT
ATGTGTTAGGTTTGGGCCAGCAGGATGATTAGTAAAGGACATGTAATGAA
AGTGGTAGATACATATGGTTTTGTTTCTCGTATTCAGCGCATTGGTTGCC
AACCCGAACAACTACTTTACTCCGGGCCAATCCCGCTCGTGGTCTACTGA
TCAGGGAAAAAAGGAAATAGAAAAAGTCTATCAGTGCCCCCCCCCCCCCC
CGCGCTGCTCGTTCGGAGGAAACAATCAGAAAATCACGCCACGCATCTAC
ATGCGCCTAGGCGCAACGCAGGTCTCGTTCCGTCTCGCGCCTGCACAAAG
ATTCCTTCGACTTGTCGACTGGGCCAATTGGTGTCGCTTCGGAAGATTCT
ACGCTTCTGTGTGCGATGACAACTTCACCAGTCTATCTGCCTCTCTCTTC
TTCTGGCGATGTCTCGCCGCCCGTCTATCTCTTCTTTCCTTCACGCGGCC
ATGAACCTCCGCCCGCCCTCCGCGACAGTTTCAACTCACACCTCAGCCTA
TAACGCCGTCGCTTTCCATCCCGCTATGCCGAACGCCCGGATGTCGTTCT
ACTTAGGTGGTGGTGCCGGCTAGTATGTTTTTTTCTCTACACATTTCCAC
CGAATCCCGTGCTGCCTTATTCGCGGTCGTTGCTTGATCTTGACTATCAA
TCAAGAACAATATCCAGCAGAGTAGACGCGTACTGTACACAATAACTCAT
GCGGCCGAGAGCTGTCGTAGACGCGGTTATCTTACTCTCAACCGCCGTCC
TCGACGTTGCCTTTCTTAGGAACTGTATGATGACTTTGCCGAGGAAAGGC
GTCTGGCAGGCGAATACACGATCAGCTACCCCTACTTCACCAAGATT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig983:189643..192939+

>mRNA_A-nodosum_M_contig983.19.1 ID=mRNA_A-nodosum_M_contig983.19.1|Name=mRNA_A-nodosum_M_contig983.19.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=267bp|location=Sequence derived from alignment at A-nodosum_M_contig983:189643..192939+ (Ascophyllum nodosum dioecious)
ATGATACAAGCTCTCAAGAACAACCCCGGTTCTCCTGCGTTGAAAATGAA
CAAGAACAAGCGGGCTCGATTCGGCATAGCATCTCCTTCCAAGGATGCGT
GTCTAGGTTACATCGATCACTTCGCAGAGGTGTACGGTCAGCTGATGCCG
CACGAGAACGCAACGTATCTCTACCTCGGCAGCAAACAGGAACTGTATGA
TGACTTTGCCGAGGAAAGGCGTCTGGCAGGCGAATACACGATCAGCTACC
CCTACTTCACCAAGATT
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