mRNA_A-nodosum_M_contig983.17.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig983.17.1
Unique NamemRNA_A-nodosum_M_contig983.17.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig983.17.1 vs. uniprot
Match: A0A6H5K803_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K803_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 1.460e-5
Identity = 21/46 (45.65%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   16 ELSKDHVKTIKGKLPVRLDKVAKKSADLRQYVEAWDREMAAVNTYV 153
            +L+++HV  IK KL  +LDK+A+KS+D+R +++AWD+ M+ V+ +V
Sbjct:  102 QLTEEHVCIIKSKLTNKLDKLARKSSDMRPFMDAWDKRMSDVDVFV 147
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig983.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K803_9PHAE1.460e-545.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig983contigA-nodosum_M_contig983:184961..185396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size155
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size153
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870517.2034848-CDS-A-nodosum_M_contig983:184960..1850381680870517.2034848-CDS-A-nodosum_M_contig983:184960..185038Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig983 184961..185038 -
1680870517.218577-CDS-A-nodosum_M_contig983:185321..1853961680870517.218577-CDS-A-nodosum_M_contig983:185321..185396Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig983 185322..185396 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig983.17.1prot_A-nodosum_M_contig983.17.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig983 184961..185396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig983.17.1

>prot_A-nodosum_M_contig983.17.1 ID=prot_A-nodosum_M_contig983.17.1|Name=mRNA_A-nodosum_M_contig983.17.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=51bp
LPAGCELSKDHVKTIKGKLPVRLDKVAKKSADLRQYVEAWDREMAAVNTY
V
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mRNA from alignment at A-nodosum_M_contig983:184961..185396-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig983.17.1 ID=mRNA_A-nodosum_M_contig983.17.1|Name=mRNA_A-nodosum_M_contig983.17.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=436bp|location=Sequence derived from alignment at A-nodosum_M_contig983:184961..185396- (Ascophyllum nodosum dioecious)
TTGCCGGCAGGATGCGAGCTCTCGAAGGATCATGTTAAGACCATCAAAGG
CAAACTGCCTGTTCGCCTCGACAAGGTATACACACGTTGGCATTGTTTTC
GCCTGAGTGCGTTCTTGTCATCTGAATAGAGCGAGAACAGATACACGTGC
ACACTGCGCATTTGTTGTATCCACTAAATTGTGTGTCGACTTCTTGCTAC
TTGTTCTCCGTTCCTGATCGCGCACGGGTAATTTTTTTTTATATACAGTG
AAGTCTCCACTGCCCAGTTTGTCCTGTGTCCGGCCGTCAACACCTCGCTG
TTGTTCCCATGAACTTGTGCGCCTGGTTCGACGTCAATTCTGCGTTGCCC
TTTTTCAGGTAGCGAAGAAGAGCGCCGACCTTCGACAGTACGTCGAAGCA
TGGGATCGAGAGATGGCCGCCGTGAACACCTACGTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig983:184961..185396-

>mRNA_A-nodosum_M_contig983.17.1 ID=mRNA_A-nodosum_M_contig983.17.1|Name=mRNA_A-nodosum_M_contig983.17.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=153bp|location=Sequence derived from alignment at A-nodosum_M_contig983:184961..185396- (Ascophyllum nodosum dioecious)
TTGCCGGCAGGATGCGAGCTCTCGAAGGATCATGTTAAGACCATCAAAGG
CAAACTGCCTGTTCGCCTCGACAAGGTAGCGAAGAAGAGCGCCGACCTTC
GACAGTACGTCGAAGCATGGGATCGAGAGATGGCCGCCGTGAACACCTAC
GTG
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