mRNA_A-nodosum_M_contig983.14.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig983.14.1
Unique NamemRNA_A-nodosum_M_contig983.14.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig983.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig983contigA-nodosum_M_contig983:182094..182653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size158
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870517.1009614-CDS-A-nodosum_M_contig983:182095..1821711680870517.1009614-CDS-A-nodosum_M_contig983:182095..182171Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig983 182096..182171 -
1680870517.1129236-CDS-A-nodosum_M_contig983:182573..1826531680870517.1129236-CDS-A-nodosum_M_contig983:182573..182653Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig983 182574..182653 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig983.14.1prot_A-nodosum_M_contig983.14.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig983 182096..182653 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig983.14.1

>prot_A-nodosum_M_contig983.14.1 ID=prot_A-nodosum_M_contig983.14.1|Name=mRNA_A-nodosum_M_contig983.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=52bp
WTKKSGVCLGQESSTPFAPLFLVACLRADVGRRLGLDRRCCRPGFRDTLC
LP
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mRNA from alignment at A-nodosum_M_contig983:182094..182653-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig983.14.1 ID=mRNA_A-nodosum_M_contig983.14.1|Name=mRNA_A-nodosum_M_contig983.14.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=560bp|location=Sequence derived from alignment at A-nodosum_M_contig983:182094..182653- (Ascophyllum nodosum dioecious)
TGGACGAAGAAAAGCGGGGTATGCTTGGGACAAGAATCCTCGACTCCTTT
CGCACCGCTTTTTCTCGTGGCTTGTTTAAGGTACTGGCGGTAGTTTTTAA
AGGACATGCCACGCCCACGTGCCCATGTTTCTGATCTGTTCCAGGCACTG
GCGGTATTTTTTGCAGGGCATGCCACGGCCTCGTTCCCATGTTTCTTATC
CCACCTCTCAGGTTGTCGCCATCGGCGTACTGTTGACATCGCCGCATGTA
GAGGTTACATTTGGCGTTTTTGTGGAGTTTTCTTACGCGTGCCTGGTATT
AAGATTGTGAGCCTCCCCCCCCCGTTTTTTGCATTTTCTACGGGAGATGG
TGTTTGAAAGCTGTTTTTCGTGCGCCGCATATTTGCCCCTCGCAACCGTG
CGCCGCGATATTGGAGTTGATTACAGATTGGCAAAGATTCAATCTCAGCT
TCTTTTCCGTATTGTTTTTCTTTTACTTACAGAGCCGACGTGGGCAGGAG
GCTTGGATTGGACCGAAGGTGTTGCCGTCCGGGCTTCCGCGATACACTGT
GCCTCCCCGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig983:182094..182653-

>mRNA_A-nodosum_M_contig983.14.1 ID=mRNA_A-nodosum_M_contig983.14.1|Name=mRNA_A-nodosum_M_contig983.14.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=156bp|location=Sequence derived from alignment at A-nodosum_M_contig983:182094..182653- (Ascophyllum nodosum dioecious)
TGGACGAAGAAAAGCGGGGTATGCTTGGGACAAGAATCCTCGACTCCTTT
CGCACCGCTTTTTCTCGTGGCTTGTTTAAGAGCCGACGTGGGCAGGAGGC
TTGGATTGGACCGAAGGTGTTGCCGTCCGGGCTTCCGCGATACACTGTGC
CTCCCC
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