mRNA_A-nodosum_M_contig982.20.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig982.20.1
Unique NamemRNA_A-nodosum_M_contig982.20.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig982.20.1 vs. uniprot
Match: D7G8C8_ECTSI (Putative respiratory burst oxidase protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C8_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 3.980e-24
Identity = 49/73 (67.12%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    1 MHLAFIPFIIAICFHGGSLRLLGAILLMVYLADRFYFTTKMTFFIGEPNFKMVGRGTFVRFYLPEGYHFKPGA 219
            +HL FIPF+IA+CFHG +L++LGAILL  YL DR YFTTKMTF +  P +K VGRGT VRF LP GY +KPGA
Sbjct:  401 LHLLFIPFMIAVCFHGRALQILGAILLAWYLLDRLYFTTKMTFLLSSPVYKPVGRGTLVRFELPPGYQYKPGA 473
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BLAST of mRNA_A-nodosum_M_contig982.20.1 vs. uniprot
Match: A0A6H5JHI2_9PHAE (FAD-binding FR-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI2_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.010e-23
Identity = 48/73 (65.75%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    1 MHLAFIPFIIAICFHGGSLRLLGAILLMVYLADRFYFTTKMTFFIGEPNFKMVGRGTFVRFYLPEGYHFKPGA 219
            +HL F+PF+IA+CFHG +L++LGAILL  YL DR YFTTKMTF +  P +K VGRGT VRF LP GY +KPGA
Sbjct:  413 LHLLFMPFMIAVCFHGRALQILGAILLAWYLLDRLYFTTKMTFLLSSPVYKPVGRGTLVRFELPPGYQYKPGA 485
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BLAST of mRNA_A-nodosum_M_contig982.20.1 vs. uniprot
Match: A0A6H5JEC1_9PHAE (FAD_binding_8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEC1_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 3.310e-15
Identity = 39/73 (53.42%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:    1 MHLAFIPFIIAICFHGGSLRLLGAILLMVYLADRFYFTTKMTFFIGEPNFKMVGRGTFVRFYLPEGYHFKPGA 219
            +H+ FIPF++A+CFHG  L +L  IL+  YL DR YFTT+M F I    F+ VGR T VRF LP GY F  G+
Sbjct:  389 LHMLFIPFMVAMCFHGKVLAVLAGILVAWYLVDRTYFTTRMHFCIERAVFRPVGRATLVRFDLPPGYQFNVGS 461
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BLAST of mRNA_A-nodosum_M_contig982.20.1 vs. uniprot
Match: D7G8D1_ECTSI (Putative respiratory burst oxidase homolog protein C-ter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D1_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 7.910e-10
Identity = 26/41 (63.41%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 MHLAFIPFIIAICFHGGSLRLLGAILLMVYLADRFYFTTKM 123
            +H+ FIPF++A+CFHG  L+ LGA+LL+ YL DRFYFTT+M
Sbjct:  122 LHMLFIPFMVALCFHGTRLKALGAVLLVWYLLDRFYFTTRM 162
[Close]
BLAST of mRNA_A-nodosum_M_contig982.20.1 vs. uniprot
Match: D7G8C4_ECTSI (Putative respiratory burst oxidase homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C4_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 2.680e-5
Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 MHLAFIPFIIAICFHGGSLRLLGAILLMVYLADRFYFTTKM 123
            +H+ FIPF++A+CFHG  L +L  IL+  YL DR YFTT++
Sbjct:  180 LHMLFIPFMVAMCFHGKVLAVLAGILVAWYLVDRTYFTTRI 220
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig982.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G8C8_ECTSI3.980e-2467.12Putative respiratory burst oxidase protein n=1 Tax... [more]
A0A6H5JHI2_9PHAE1.010e-2365.75FAD-binding FR-type domain-containing protein n=1 ... [more]
A0A6H5JEC1_9PHAE3.310e-1553.42FAD_binding_8 domain-containing protein n=1 Tax=Ec... [more]
D7G8D1_ECTSI7.910e-1063.41Putative respiratory burst oxidase homolog protein... [more]
D7G8C4_ECTSI2.680e-553.66Putative respiratory burst oxidase homolog n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig982contigA-nodosum_M_contig982:123947..125448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G8C8
PFAMsAn_peroxidase,Cyt-b5,DOMON,EF-hand_1,FAD_binding_6,FAD_binding_8,Ferric_reduct,NAD_binding_6,ZZ
Model size219
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons3
Evalue6.53e-25
EggNOG OGsKOG0039@1|root,KOG0039@2759|Eukaryota
Descriptionoxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
Cds size219
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870516.8107398-CDS-A-nodosum_M_contig982:123946..1239711680870516.8107398-CDS-A-nodosum_M_contig982:123946..123971Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig982 123947..123971 -
1680870516.8247204-CDS-A-nodosum_M_contig982:124666..1247381680870516.8247204-CDS-A-nodosum_M_contig982:124666..124738Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig982 124667..124738 -
1680870516.837788-CDS-A-nodosum_M_contig982:125326..1254481680870516.837788-CDS-A-nodosum_M_contig982:125326..125448Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig982 125327..125448 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig982.20.1prot_A-nodosum_M_contig982.20.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig982 123947..125448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig982.20.1

>prot_A-nodosum_M_contig982.20.1 ID=prot_A-nodosum_M_contig982.20.1|Name=mRNA_A-nodosum_M_contig982.20.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=73bp
MHLAFIPFIIAICFHGGSLRLLGAILLMVYLADRFYFTTKMTFFIGEPNF
KMVGRGTFVRFYLPEGYHFKPGA
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mRNA from alignment at A-nodosum_M_contig982:123947..125448-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig982.20.1 ID=mRNA_A-nodosum_M_contig982.20.1|Name=mRNA_A-nodosum_M_contig982.20.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1502bp|location=Sequence derived from alignment at A-nodosum_M_contig982:123947..125448- (Ascophyllum nodosum dioecious)
ATGCATCTAGCGTTCATCCCTTTCATCATTGCCATCTGCTTCCACGGAGG
ATCTTTGCGGCTTTTGGGTGCAATCCTCCTCATGGTGTACCTCGCAGATC
GCTTTTACTTCACGACCAAAATGTGGGTTGCGAGTAGTTTTGGAGTAGTT
GAAGGTCGTTGATTTTAAACAAAGAACACCCTACACCTTTGACTCCCCAC
AGAGTCACCCTCAGTCGTACCCTATTCAAGACAACAGTGGTACTCGTCTT
ACGCTATAGCCTAATCATACGATAGAGCTACTAGTGGAAAAGGGAGCAGG
ACTACGGTATTTGTAGACTGTTTGGTTGGGCCCATTTTAATAACAATTGT
GGCCAAAACTAGAGAAATTTTGCAATCAAACTTTGTCTTTTCCGTCATGT
TTTGTCTCTTACTCGACAGCGCATTAATCGTCCAGCACGCACTGCCGATG
TTAGGGCCTTCTTCGCATGTCATACATTATATTAAGAGGGGGGGGGAATT
CTACCCCCCTTCACGCTGATCAAAACACACTACTATAAGCATTACTTTCC
TTGTCATACTATCTAAAGTGTTGCTCGCGAATGAAAAAAAAGTGCTGCTG
CAACTTCTCTCTCCTCCAAACCCGTTGTCGTACATATGAGCACAGTCGCA
TGCACCTCACACGTTTGAAATCATGGAGTGCCTCCTTCTCATTCGTCTGG
GTGGGGACAGGACCTTCTTCATCGGCGAACCCAATTTCAAGATGGTCGGG
AGGGGCACCTTTGTCCGTTTTTATCTCCCAGAGTGAGCAACGTGGCAGCA
TGCATTTACCGCTTTTCTCAGTGTGTGTATGTGTTGAGTTGCAAACAACC
CCGCAATCCGGCGCTGCCATGCTACGCAGTCTAATATAATAGTATTGTGT
ATCTAGCCTTGTTGTCCTCTCAACGGGGATCCGTGTGGTGTGTGTGTGGG
TTTGCATGTATTTATTGAATTGCACACAACCGCGCAATTCGGCCCTGTCA
ACTTAGTCAATCTATGCCGCTCGCATTGATCCTCACAAGGGGGGATCAAT
GAAACTATTTGCGAAAAGCTCTGACCAGACGCGACAAAGGAGAACCACTC
TCTATACGTGTACAGTTCTTAGGTATGTGTGTGTAATTATTTATTGTTGG
GCGTGTGTGTTTGTGTGTTTTGGGCAAGTAGCGGAAGGAAGCATAAAATG
CGTTGCGCTGGACGGATGGGCAGACGGAACAAGCCGAGGCACTAAGGACA
CAAAACGTTTTCATATTGGCAAACCCACGGTTTCTCTACCCGCCCGCACA
CGTCTGTTATGCGCAGTCTGGTGTTCCCCGCTTGCGCAACACATTTTCTA
ACACAAGCAAGCGTCGCGGTTCATGGTCAAAGCTATTGTCCCCCTACCCC
ATCGCCCGTCCCCTCCACCCCCTTCTGCTTAACGATGCCTACATTTGAAA
TATTGCTGGAACTGTCAACGTTACCAGAGGATACCATTTCAAGCCGGGAG
CA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig982:123947..125448-

>mRNA_A-nodosum_M_contig982.20.1 ID=mRNA_A-nodosum_M_contig982.20.1|Name=mRNA_A-nodosum_M_contig982.20.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=219bp|location=Sequence derived from alignment at A-nodosum_M_contig982:123947..125448- (Ascophyllum nodosum dioecious)
ATGCATCTAGCGTTCATCCCTTTCATCATTGCCATCTGCTTCCACGGAGG
ATCTTTGCGGCTTTTGGGTGCAATCCTCCTCATGGTGTACCTCGCAGATC
GCTTTTACTTCACGACCAAAATGACCTTCTTCATCGGCGAACCCAATTTC
AAGATGGTCGGGAGGGGCACCTTTGTCCGTTTTTATCTCCCAGAAGGATA
CCATTTCAAGCCGGGAGCA
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