mRNA_A-nodosum_M_contig981.18.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig981.18.1
Unique NamemRNA_A-nodosum_M_contig981.18.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig981.18.1 vs. uniprot
Match: A0A6H5JIS8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS8_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 2.590e-72
Identity = 145/344 (42.15%), Postives = 194/344 (56.40%), Query Frame = 1 
Query:  172 VGQRRKSAVADGFDKFVRSRSNGASGWEDVSPDRVVEWLCFLDSQGKGTTIVRATSCPQVGQYSLSCSDRSLGCTRRYAFGSLQKSFVSKLKRAYVEILGRFEEWSPRDMRGNPVTGAVIDQYLAFATQEQLRAGVTPKQATPILRPDLQKIMRDMHTCLLCAAQPVDRLAYARDMALFAIAFRTGSRGSDLAKILAAQVLHLPSNQGIVINFQFTKTLRDGATHASRLVPDKDMLETCAVAATIRYAQAADSCEWDMSAGYLFPEMSASGERIPKRRARPLSAKAMAARFKLHLEHAGLGARHFTFHSFRVGYAVSQTIAGKDIAEIMAAVNWKSEKVSRRYV 1203
             G+ RK  VAD FD F+ S S G  GW   SPD VV+W  +LDSQGKGT +V   +C  VG            C +RY   SL+K F SKLK AY E LGR ++W+P    GNP     +D YL F T+EQ R GVT KQA P+L   L +++  M    L +    +R+A  RD+ALF++A  +  RG DL+  L +QVL LP ++G + NF F KTLR  A+  + +V      + CAV A   Y  AA    WD+S+GYLFP +   G R   +    L A  M +  + HL  A L A HF+ HSFRVG ++S+++ G  I EIM    WK+E +++ YV
Sbjct:  687 AGEVRKHRVADEFDLFLLSYSGGGKGWVHASPDDVVDWFSYLDSQGKGTKLVHDATCAGVGSSDRRSCSPGATCKKRYGAESLRKGFYSKLKMAYKEQLGRGDDWNPTVGSGNPCASPTVDAYLTFTTEEQKRVGVTAKQAAPLLEDTLGELLPHMRLRALASDSMAERIAITRDVALFSLAHHSMRRGFDLSFTLGSQVLRLPESRGFIFNFLFGKTLR--ASTEAIVVLASTNRDVCAVRAVAEYILAAQQVGWDLSSGYLFPSVLDDGSRGNSK----LVATQMTSSLQAHLRAASLPA-HFSMHSFRVGGSLSRSMGGSAIEEIMQIGGWKTESMAKYYV 1023
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BLAST of mRNA_A-nodosum_M_contig981.18.1 vs. uniprot
Match: UPI000A2A7226 (uncharacterized protein LOC110250634 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A7226)

HSP 1 Score: 149 bits (375), Expect = 3.690e-37
Identity = 112/369 (30.35%), Postives = 179/369 (48.51%), Query Frame = 1 
Query:  100 NLLVVHETPLRIRYDQFCSFQNETVGQRRKSAVADGFDKFVRSRSNGASGWEDVSPDRVVEWLCFLDSQGKGTTIVRATSCPQVGQYSLSCSDRSLGCTRRYAFGSLQKSFVSKLKRAYVEILGRFEEWSPRDMRGNPVTGAVIDQYLAFATQEQLRAGVTPKQATPILRPDLQKIMRDMHTCLLCAA-QPVDRLAYARDMALFAIAFRTGSRGSDLAKILAAQVLHLPSNQGIVINFQFTKTLRDGATHASRLVPDKDMLETCAVAATIRYAQAADSCEWDMSAGYLFPEMSASGERIPKRRARPLSAKAMAARFKLHLEHAGLGARHFTFHSFRVGYAVSQTIAGKDIAEIMAAVNWKSEKVSRRYV 1203
            N+  + E  L++R     S QN +  ++ KS++   F+ F+RS       +   +P+ V  +L + D  GK    V   SCP +    ++    +  C RR AF ++  S+V KL+  + E  GR  +W+     GNP     + QYL   T+EQLRA + PKQATP+    L  + R     L  A+ QPV+    ARD A F   F +  RGS+L  +  +++L  P + G++ N  + KTLRDG ++   +    +  + C V A   Y   A     D+S GYLF   +  G  + K       +     R K +L+ A +     T HSFR G A++  ++G  +A++MA V W ++  +  Y+
Sbjct:   20 NIESIDERLLQLRE----SVQNSSYSKQ-KSSLRLEFETFLRSLXRRKCIFS-AAPEDVARFLVWKDPSGKKA--VHVBSCPNIASQKVT----TCACPRRLAFKTVD-SYVGKLRAIFNEA-GRTGDWNGMLGFGNPAASPEVQQYLKAVTEEQLRAHMRPKQATPLFLSKLLLLARLWDRKLANASTQPVNHFTLARDQAFFKALFFSFDRGSELGSVRTSEILRFPRDDGLLFNHVWGKTLRDGTSNVFGIRRHANP-QICPVRAIETYVATAAELRIDLSDGYLFRPTNHQGHIVNK----AFLSSTAEGRLKTYLKEANIDEGE-TLHSFRAGXAITLALSGAQLADVMAHVGWSNKGTALYYM 368
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BLAST of mRNA_A-nodosum_M_contig981.18.1 vs. uniprot
Match: UPI00106AFE02 (uncharacterized protein LOC114544373 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106AFE02)

HSP 1 Score: 92.4 bits (228), Expect = 1.700e-16
Identity = 71/239 (29.71%), Postives = 115/239 (48.12%), Query Frame = 1 
Query:  127 LRIRYDQFCSFQNETVGQRRKSAVADGFDKFVRSRSNGASGWEDVSPDRVVEWLCFLDSQGKGTTIVRATSCPQVGQYSLSCSDRS--LGCTRRYAFGSLQKSFVSKLKRAYVEILGRFEEWSPRDMRGNPVTGAVIDQYLAFATQEQLRAGVTPKQATPILRPDLQKIMRDMHTCLLCA-AQPVDRLAYARDMALFAIAFRTGSRGSDLAKILAAQVLHLPSNQGIVINFQFTKTLRD 834
            +  R     + +NE   Q++KS +   F+ F+ S  +  S     +P+ ++ +L + D  GK  T++    CP  G       DR     C RR A  ++  + ++KL+  ++    R ++ S      NP     + QYLA   +EQ +A ++PKQATP+     + +   +H  +      P     YARD+  F+I F +GSR SDL +I   QVL LP + G +    F KTLR+
Sbjct:  453 INARLSLLHATRNEKPYQKQKSQLQTQFEAFMASLPSPKSILS-ATPEDIIRFLIWRDQFGK--TVIHHRICPHFG-----VRDRQPPCDCPRRLAANTVDNN-IAKLRTIFLSAR-RPDQISDGLPPYNPAAHPSVKQYLASICEEQAKATISPKQATPLFHDKFKVLCTHLHQRIRQHDLSPTLCYLYARDLGFFSIDFYSGSRASDLGRIHTKQVLTLPDSGGFLFRQTFGKTLRN 681
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig981.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JIS8_9PHAE2.590e-7242.15Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
UPI000A2A72263.690e-3730.35uncharacterized protein LOC110250634 n=1 Tax=Exaip... [more]
UPI00106AFE021.700e-1629.71uncharacterized protein LOC114544373 n=1 Tax=Dendr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig981contigA-nodosum_M_contig981:237023..238225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7739.XP_002592500.1
PFAMsDUF640
Model size1203
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.05e-25
EggNOG OGsKOG0297@1|root,KOG0297@2759|Eukaryota,3AMDY@33154|Opisthokonta,3C0VI@33208|Metazoa
DescriptionProtein of unknown function (DUF640)
Cds size1203
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870516.239923-CDS-A-nodosum_M_contig981:237022..2382251680870516.239923-CDS-A-nodosum_M_contig981:237022..238225Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig981 237023..238225 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig981.18.1prot_A-nodosum_M_contig981.18.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig981 237023..238225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig981.18.1

>prot_A-nodosum_M_contig981.18.1 ID=prot_A-nodosum_M_contig981.18.1|Name=mRNA_A-nodosum_M_contig981.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=401bp
CHSCFHENDETYRLCQNCSSDAPRGPPAVGNDSNLLVVHETPLRIRYDQF
CSFQNETVGQRRKSAVADGFDKFVRSRSNGASGWEDVSPDRVVEWLCFLD
SQGKGTTIVRATSCPQVGQYSLSCSDRSLGCTRRYAFGSLQKSFVSKLKR
AYVEILGRFEEWSPRDMRGNPVTGAVIDQYLAFATQEQLRAGVTPKQATP
ILRPDLQKIMRDMHTCLLCAAQPVDRLAYARDMALFAIAFRTGSRGSDLA
KILAAQVLHLPSNQGIVINFQFTKTLRDGATHASRLVPDKDMLETCAVAA
TIRYAQAADSCEWDMSAGYLFPEMSASGERIPKRRARPLSAKAMAARFKL
HLEHAGLGARHFTFHSFRVGYAVSQTIAGKDIAEIMAAVNWKSEKVSRRY
V
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mRNA from alignment at A-nodosum_M_contig981:237023..238225-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig981.18.1 ID=mRNA_A-nodosum_M_contig981.18.1|Name=mRNA_A-nodosum_M_contig981.18.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1203bp|location=Sequence derived from alignment at A-nodosum_M_contig981:237023..238225- (Ascophyllum nodosum dioecious)
TGCCACTCGTGCTTCCATGAAAACGACGAGACGTATCGATTGTGTCAGAA
TTGTAGCAGTGACGCGCCGCGGGGCCCTCCCGCGGTCGGGAACGACTCTA
ACCTTCTCGTAGTCCACGAGACCCCACTACGCATCCGGTATGATCAATTC
TGCTCATTTCAGAACGAAACGGTAGGACAGCGGCGTAAAAGTGCGGTGGC
CGACGGATTTGACAAATTTGTGCGGTCCCGCTCGAACGGAGCGTCCGGGT
GGGAAGACGTCTCCCCGGATAGGGTGGTGGAATGGCTATGCTTCCTCGAC
TCGCAAGGCAAAGGGACTACGATTGTTCGTGCGACGTCGTGCCCGCAGGT
AGGACAGTATTCTCTCTCCTGCTCAGACCGCTCGCTCGGCTGTACGCGGC
GGTACGCGTTTGGATCCCTGCAGAAGTCATTCGTGTCCAAACTCAAACGG
GCTTACGTGGAAATCCTAGGCCGCTTTGAAGAATGGTCGCCGCGGGACAT
GCGCGGTAACCCAGTCACGGGTGCAGTAATCGACCAATATCTCGCTTTTG
CGACGCAGGAGCAACTGCGAGCGGGAGTTACACCCAAACAGGCGACCCCC
ATCCTGCGCCCGGACTTGCAAAAAATAATGCGAGATATGCACACGTGTCT
GCTCTGTGCGGCGCAACCAGTTGACCGTCTAGCTTACGCGCGAGACATGG
CTTTGTTCGCGATCGCGTTTCGCACCGGAAGCCGAGGTAGCGACCTCGCT
AAGATATTAGCCGCTCAGGTTCTCCATCTGCCTTCCAACCAAGGGATAGT
TATAAACTTCCAATTTACAAAGACACTTCGAGATGGGGCCACGCACGCCT
CCCGCCTGGTCCCGGATAAGGACATGCTAGAAACGTGCGCGGTAGCCGCG
ACAATTCGCTACGCGCAGGCCGCTGATTCATGCGAATGGGATATGTCCGC
GGGGTACCTTTTCCCGGAAATGTCAGCGTCGGGAGAGCGTATCCCAAAAC
GGCGGGCTAGACCCCTTTCCGCAAAAGCCATGGCAGCGCGTTTCAAGCTA
CACTTGGAACACGCCGGCTTGGGGGCGAGGCATTTTACCTTCCATTCGTT
TAGGGTGGGGTACGCCGTTTCTCAGACTATCGCAGGTAAGGACATTGCAG
AGATTATGGCGGCAGTGAATTGGAAGTCGGAAAAGGTTTCCCGCCGGTAC
GTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig981:237023..238225-

>mRNA_A-nodosum_M_contig981.18.1 ID=mRNA_A-nodosum_M_contig981.18.1|Name=mRNA_A-nodosum_M_contig981.18.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1203bp|location=Sequence derived from alignment at A-nodosum_M_contig981:237023..238225- (Ascophyllum nodosum dioecious)
TGCCACTCGTGCTTCCATGAAAACGACGAGACGTATCGATTGTGTCAGAA
TTGTAGCAGTGACGCGCCGCGGGGCCCTCCCGCGGTCGGGAACGACTCTA
ACCTTCTCGTAGTCCACGAGACCCCACTACGCATCCGGTATGATCAATTC
TGCTCATTTCAGAACGAAACGGTAGGACAGCGGCGTAAAAGTGCGGTGGC
CGACGGATTTGACAAATTTGTGCGGTCCCGCTCGAACGGAGCGTCCGGGT
GGGAAGACGTCTCCCCGGATAGGGTGGTGGAATGGCTATGCTTCCTCGAC
TCGCAAGGCAAAGGGACTACGATTGTTCGTGCGACGTCGTGCCCGCAGGT
AGGACAGTATTCTCTCTCCTGCTCAGACCGCTCGCTCGGCTGTACGCGGC
GGTACGCGTTTGGATCCCTGCAGAAGTCATTCGTGTCCAAACTCAAACGG
GCTTACGTGGAAATCCTAGGCCGCTTTGAAGAATGGTCGCCGCGGGACAT
GCGCGGTAACCCAGTCACGGGTGCAGTAATCGACCAATATCTCGCTTTTG
CGACGCAGGAGCAACTGCGAGCGGGAGTTACACCCAAACAGGCGACCCCC
ATCCTGCGCCCGGACTTGCAAAAAATAATGCGAGATATGCACACGTGTCT
GCTCTGTGCGGCGCAACCAGTTGACCGTCTAGCTTACGCGCGAGACATGG
CTTTGTTCGCGATCGCGTTTCGCACCGGAAGCCGAGGTAGCGACCTCGCT
AAGATATTAGCCGCTCAGGTTCTCCATCTGCCTTCCAACCAAGGGATAGT
TATAAACTTCCAATTTACAAAGACACTTCGAGATGGGGCCACGCACGCCT
CCCGCCTGGTCCCGGATAAGGACATGCTAGAAACGTGCGCGGTAGCCGCG
ACAATTCGCTACGCGCAGGCCGCTGATTCATGCGAATGGGATATGTCCGC
GGGGTACCTTTTCCCGGAAATGTCAGCGTCGGGAGAGCGTATCCCAAAAC
GGCGGGCTAGACCCCTTTCCGCAAAAGCCATGGCAGCGCGTTTCAAGCTA
CACTTGGAACACGCCGGCTTGGGGGCGAGGCATTTTACCTTCCATTCGTT
TAGGGTGGGGTACGCCGTTTCTCAGACTATCGCAGGTAAGGACATTGCAG
AGATTATGGCGGCAGTGAATTGGAAGTCGGAAAAGGTTTCCCGCCGGTAC
GTG
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