mRNA_A-nodosum_M_contig981.13.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig981.13.1
Unique NamemRNA_A-nodosum_M_contig981.13.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig981.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig981contigA-nodosum_M_contig981:198402..200649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size173
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870515.559043-CDS-A-nodosum_M_contig981:198401..1984961680870515.559043-CDS-A-nodosum_M_contig981:198401..198496Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig981 198402..198496 -
1680870515.5700693-CDS-A-nodosum_M_contig981:200573..2006491680870515.5700693-CDS-A-nodosum_M_contig981:200573..200649Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig981 200574..200649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig981.13.1prot_A-nodosum_M_contig981.13.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig981 198402..200649 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig981.13.1

>prot_A-nodosum_M_contig981.13.1 ID=prot_A-nodosum_M_contig981.13.1|Name=mRNA_A-nodosum_M_contig981.13.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=57bp
ITIINVPDILQRATWPCGHRRIPSPAKPRSCDGSPSHLRRLDRCRGADNA
SRDQEY*
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mRNA from alignment at A-nodosum_M_contig981:198402..200649-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig981.13.1 ID=mRNA_A-nodosum_M_contig981.13.1|Name=mRNA_A-nodosum_M_contig981.13.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2248bp|location=Sequence derived from alignment at A-nodosum_M_contig981:198402..200649- (Ascophyllum nodosum dioecious)
ATCACCATAATAAACGTTCCGGACATCCTACAGAGGGCTACGTGGCCGTG
CGGACATCGGAGGATTCCATCACCAGGTACTTGTTAGGCCCTTTTTCAAT
TTGAGAATTTAACACTCGTATTTTTGCCTGTCACTGTTTTAAACGTATAT
AATATAATATGATACAACATGACAGACAACGTTGGACGAGAAGGATGAGT
TGACCTCACTGACAACGAGGGATATTTCCTCACTTGGACATCACATATAA
CATTCATAATAATAATAGCAGAGGGGGCATCAACCGACCTGGTTGACAAT
TCTGCTCATCGTTGCCTGAACAGGAAAATTGAGTTTCCGTGTCGGTCCCT
GTTCGCACGTGAGGCAGTTCCGTCACGCGTCAGTACGCTCATCCCCCAAC
TAACCCGGGGTAAATCTGGTGTCTGTATCGTACATGCCCATTTTTAAAAA
AAGTGGGTTTGGGAAAAGAGAGACGCTCATCAGTTGAAAAAAAGCAAACC
TTCTCACTCGTTCTATATATCTATGTTGAGGGCTCCTAACCTTGTGCCAG
CGGATTCTGGACAGGCAGTGAACGCCATCGCTACGGAAACGCGTGACCCG
ATATACTCTGGACTGACCCGATGGCGGTTGAGATGGATGCCATCGGGAAG
CTGAGCCCTGAGTAGGCACAAATTCAGGCTGGGTATGGGGATGAGACAGC
TGACAATGGACGGGACGCTCAAATACGTCTCACCGAGTAGCTAAATTCTC
GAGCGCGACAATACCACTTACTCCAAAACCGGCGTATTTACACATTACAG
GTACTACTAGTGGAAGTATAAAACGAGCACAAAATATGAGAACATCGATC
GATGCAGCAGCAACTTGGCGAAGGCGTGGAATATGACCATTCTACAACAT
ATATATATAAGAAACGAGCAATCGAACCAACCACCTGACCCGTCACTGTA
AGGGATATATATGTGGAAATAAGACAGTGCTGGCTCTATCCGAGCAATAA
ATTATCCAATTTCCATGACTTGATCTATGTGTTGTGTGTGTTCCGAACGT
TGACCTCCGGCCATGAAATAGGTTACCTATTATTTGCTTGAAAAGAGAAA
CACCGACCACCTAAGTTTGATCATAATGTGGTCTCGTATTATTGAAGTAT
TTAGATTGGAGATTGGCGGTGGCTTTCTTATCTTATATAGATCTGTGTAT
GTATGTGTGTAGAACATTTACATATATATGAAACGAACAGTCTAATTTTT
CGACCGTGGTAACCTTGCCAATCCTCCTCATCGTTGCCTGAACAGAAAAA
ATAGTATTTCCTAGGCCCTCTTCGCACCTGAGGCAGTCCCGTCACGCGTC
AGTGCGCTCGTTCTCCGTACTACCCAGGCTACATAATCTATTGTCTGTAT
CGCACATGCCCAAGTGCTTAAAAAAATAGTGGGTTTGGGAAAAGAGAGAC
GCATATCAGTTGGAAAAAGCAAACCTTCTCACAACACGAGCTATCAATGC
AGTAGTGTTGAGGGCTGCGAGCCTTGTGCCCCGATAAACTCGGTGGGTCG
ATCCGATGGCAGTATAGATGGATGCCATTAGGGAAGCTGGGCCCTTATTA
AGCACCAGATTCAGTCAGGTGTGAGAATAATACGTCTCGTCGAACTATAT
TCCCGGGCGCGACAATACTATGATTTTTGTATCGATTGAATTCTCACCAA
ATAAGCTGCTCTCAAAAATCTAGCCCATGGTCACAAGGTAGAAAAACACC
ATCCGGAAGAAAAGAACGTACGACGTACTCTCCATGACTCATGAACGCCT
ACAGACAAAACATTACGTGAGAAAGCCGCGTATAGATGTCAATAGATCGA
AGAGCAGACCCAATCAACAGTGTTCACAGGTCTTGGATAAACTAGAACAG
CGCTTGAGCTATATATGCTCGTCCGCCACAAACTGAATCAGTCCATCTGT
TGTAGCACTTGTAAAATACACACACATATTTTATAGGCTCTACTCGTACT
ACAAATCAATTTTGAGTGTCTACGAAACCGCAAGTACAGAGTTTTTACAG
TAGCCTAAGAAGAGCGACTAGCTTCTTAGAGGTGCGCCTCTTCATGCGAT
ATTTCCACTGAAAAGTCCCTTCCCTCTCGGACTTGTCCGCGTGATCGTTC
CAGCAAAGCCGCGCTCGTGTGATGGCAGTCCTTCTCACCTCCGGCGGCTG
GATCGTTGCCGCGGCGCTGACAACGCTAGTCGTGACCAAGAGTATTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig981:198402..200649-

>mRNA_A-nodosum_M_contig981.13.1 ID=mRNA_A-nodosum_M_contig981.13.1|Name=mRNA_A-nodosum_M_contig981.13.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=171bp|location=Sequence derived from alignment at A-nodosum_M_contig981:198402..200649- (Ascophyllum nodosum dioecious)
ATCACCATAATAAACGTTCCGGACATCCTACAGAGGGCTACGTGGCCGTG
CGGACATCGGAGGATTCCATCACCAGCAAAGCCGCGCTCGTGTGATGGCA
GTCCTTCTCACCTCCGGCGGCTGGATCGTTGCCGCGGCGCTGACAACGCT
AGTCGTGACCAAGAGTATTAA
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