mRNA_A-nodosum_M_contig980.8.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig980.8.1 vs. uniprot
Match: D7FWS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS4_ECTSI) HSP 1 Score: 176 bits (446), Expect = 6.280e-45 Identity = 102/281 (36.30%), Postives = 158/281 (56.23%), Query Frame = 1
Query: 28 VLYPLLMFVTTWRTIRLRVHPNEFLVFRYFNEGYATNASPLVV--LRKAFCAFWREQ-SLFVGADTGQWETVRIVGDEQLQSEWNWFRIGFEPMFTDYTKSGTWFVLVSLFEWFATACVATLEFDNGVVELALLLAIQMALLVTILWLRPFVNKVVNVLETLLVAMNVITVALEAVSAIVYEEIGQPRWVGSVASTLQVTGLVVFILPLLVEVVVIIFGVARKLSGAVCQRRARQITPAEDKTVQRMVLFYTLRKWVPAWFVMVHRNSVACITDTWRGLQR 861
VLYPLLMFVT +RT+ +RV PN L+F+ + E +P L F + W E SLF AD GQWETV+ D Q+ E +WFRIGFEP+F DYTK GTWF+++SL EW A A V + +N VV+L L + + +++L+PF N V+N +E + A++ I++ + A SA+ +E + + + LQ+ L ++P+ ++ V I+ G R + ++T E++ + + YT R+W W M+ N AC DT G+++
Sbjct: 1436 VLYPLLMFVTVFRTLLVRVRPNVLLIFKTYAEDGTNGDAPSRAGGLLSRFKSSWAENYSLFSWADKGQWETVQTP-DRQVSREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWAAFAFVGVM-IENSVVQLVLFCGLHSVMFFILMFLKPFANSVINNIEACVTAIDAISMGVFAASALWWEGTNRAAHLNTSVVVLQLLSLFALVIPVYLDAVTIVMGAIRNRIRKALGKTGHELTD-EEREARHYIRSYTRRQWCGTWCTMLRHNVFACARDTSEGVRK 1713
BLAST of mRNA_A-nodosum_M_contig980.8.1 vs. uniprot
Match: A0A6H5JD90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD90_9PHAE) HSP 1 Score: 172 bits (436), Expect = 1.430e-43 Identity = 102/281 (36.30%), Postives = 156/281 (55.52%), Query Frame = 1
Query: 28 VLYPLLMFVTTWRTIRLRVHPNEFLVFRYFNEGYATNASP--LVVLRKAFCAFWREQ-SLFVGADTGQWETVRIVGDEQLQSEWNWFRIGFEPMFTDYTKSGTWFVLVSLFEWFATACVATLEFDNGVVELALLLAIQMALLVTILWLRPFVNKVVNVLETLLVAMNVITVALEAVSAIVYEEIGQPRWVGSVASTLQVTGLVVFILPLLVEVVVIIFGVARKLSGAVCQRRARQITPAEDKTVQRMVLFYTLRKWVPAWFVMVHRNSVACITDTWRGLQR 861
VLYPLLMF T RT+ +RV P+E L+F+ ++E +P F + W E SLF AD GQWETV+ + + E +WFRIGFEP+F DYTK GTWF+++SL EW + A V + DN V+L L +Q A+ + ++ L+PF N V+N + +VA++ + L AV+A+ +E + V S LQ+ L ++P+ ++ V I+ G RK + +Q+T E + + +T R+W W M+ N AC DT G+++
Sbjct: 1658 VLYPLLMFATVVRTLFVRVRPDELLIFKTYDEDGTNGNTPNGRGGFLSRFKSSWAENYSLFSWADKGQWETVQTP-NRNITREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWASIALVGVM-IDNSYVQLLLFCGLQSAMFLILVCLKPFANSVINGIGACIVAIDAVCTGLLAVAALKWEGTSRATDVNSAVGVLQIVSLCALVIPVYLDAVTIVMGAIRKRIRKALGKTGQQLT-GESPEARDYIRTFTRRQWCGTWCAMLRHNVFACARDTRDGVRK 1935
BLAST of mRNA_A-nodosum_M_contig980.8.1 vs. uniprot
Match: D8LLG6_ECTSI (Mucin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG6_ECTSI) HSP 1 Score: 171 bits (433), Expect = 3.560e-43 Identity = 100/281 (35.59%), Postives = 154/281 (54.80%), Query Frame = 1
Query: 28 VLYPLLMFVTTWRTIRLRVHPNEFLVFRYFNEGYATNASPLVV--LRKAFCAFWREQ-SLFVGADTGQWETVRIVGDEQLQSEWNWFRIGFEPMFTDYTKSGTWFVLVSLFEWFATACVATLEFDNGVVELALLLAIQMALLVTILWLRPFVNKVVNVLETLLVAMNVITVALEAVSAIVYEEIGQPRWVGSVASTLQVTGLVVFILPLLVEVVVIIFGVARKLSGAVCQRRARQITPAEDKTVQRMVLFYTLRKWVPAWFVMVHRNSVACITDTWRGLQR 861
VLYPLLMF T RT+ +RV P+E L+F+ ++E +P F + W E SLF AD GQWETV+ + + E +WFRIGFEP+F DYTK GTWF+++SL EW + A V + DN V+L L +Q A+ + ++ L+PF N V+N + +VA++ ++ L AV+A+ +E + V S LQ+ L ++P+ ++ V I+ G R + +Q E + + +T R+W W M+ N AC DT G+++
Sbjct: 1617 VLYPLLMFATVVRTLFVRVRPDELLIFKTYDEDGTNGNAPNCRGGFLSHFKSSWAENYSLFSWADKGQWETVQTP-NRNITREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWASIALVGVM-IDNSNVQLLLFCGLQSAMFLILVCLKPFANSVINGIGACIVAIDAVSTGLLAVAALKWEGTSRATDVNSAVGVLQIVSLCALVIPVYLDAVTIVMGAIRNRIRKALGKTGQQQLKGESPEARDYIRTFTRRQWCGTWCAMLRHNVFACARDTREGVRK 1895
BLAST of mRNA_A-nodosum_M_contig980.8.1 vs. uniprot
Match: D8LN93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN93_ECTSI) HSP 1 Score: 144 bits (364), Expect = 3.830e-34 Identity = 103/300 (34.33%), Postives = 148/300 (49.33%), Query Frame = 1
Query: 1 VLIPSTVIFVLYPLLMFVTTWRTIRLRVHPNEFLVFRY------------FNEGY-ATNASPLVVLRKAFCAFWREQ-SLFVGADTGQWETVRIVGDEQLQSEWNWFRIGFEPMFTDYTKSGTWFVLVSLFEWFATACVATLEFDNGVVELALLLAIQMALLVTILWLRPFVNKVVNVLETLLVAMNVITVALEAVSAIVYEEIGQPRWVGSVASTLQVTGLVVFILPLLVEVVVIIFGVARKLSGAVCQRRARQITPAEDKTVQRMVLFYTLRKWVPAWFVMVHRNSVACITDTWRGLQ 858
V+I + + V YP+LMFV RT +RV PN +VF EG A +AS L +R A W E SLF A+ G WET +E + E WFRIGFEP+F D+TKSG WFV +L EW A C+ L D V++L+L A+ + ++ RPF N V+N + LV ++ + +AL AVSA +E V SV LQ+ L I+P+ ++ +I+ G R + + +K V + R W W M+ +N AC +DT G++
Sbjct: 1068 VMIAAGLALVFYPILMFVAVLRTFFVRVRPNTLIVFTPKEADDDTGDAGDAEEGQRARSASFLSKVR----AGWEEDHSLFAWANKGTWETAE-TDNEGTRREGQWFRIGFEPLFVDFTKSGAWFVAFTLVEWAALGCIGAL-IDESVLQLSLFCALHTLSFLLLVVFRPFANSVINAMGAGLVGIDAVCMALLAVSASRWEGTAAAGKVDSVVMLLQLFALCALIIPIYIDTSLILIGAIRSRLQKSTTTTPQHVRTEAEKEEDLFVRHFIRRSWPRTWCTMLGKNIFACASDTREGIR 1361
BLAST of mRNA_A-nodosum_M_contig980.8.1 vs. uniprot
Match: A0A6H5J9C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C2_9PHAE) HSP 1 Score: 140 bits (354), Expect = 4.540e-33 Identity = 91/277 (32.85%), Postives = 145/277 (52.35%), Query Frame = 1
Query: 28 VLYPLLMFVTTWRTIRLRVHPNEFLVFRYFNEGYATNASPLVVLRKAFCAFWREQSLFVGADTGQWETVRIVGDEQLQSEWNWFRIGFEPMFTDYTKSGTWFVLVSLFEWFATACVATLEFDNGVVELALLLAIQMALLVTILWLRPFVNKVVNVLETLLVAMNVITVALEAVSAIVYEEIGQPRWVGSVASTLQVTGLVVFILPLLVEVVVIIFGVARKLSGAVCQRRARQITPAEDKTVQRMVLFYTLRKWVPAWFVMVHRNSVACITDTWRGLQ 858
VLYPLLM V RT R+ V P+ +VF A P L + + SLF AD GQWETV+ D+ + +WFRIGFEP+F D+T++G+WF++ +L E A +A L DN ++ L A+ V ++ +PF N V+N + +++ + + + + A++A + + + +Q + V ++PL V+ V I+G+ R G+V +R + AE + +R+ TLR W AWF MV N AC+ DT G++
Sbjct: 407 VLYPLLMVVMVARTHRVWVQPDALIVFASSETEEALAGKPST-LSRTVSGLKNDFSLFSWADKGQWETVQTANDKARRKA-DWFRIGFEPLFADFTQAGSWFIIYTLIECAVLASIAVLV-DNSAMQFLLFCAMHSLTFVLLVGWKPFANSVLNAVAAMVMLTDAVCMGMLALAAGTFNGTATAARMDTAVMVIQALCIAVLVIPLYVDTAVSIYGMIRNRKGSVDERE-NEADRAEREVTKRL----TLRLWGRAWFRMVFSNMFACLRDTREGIR 675
BLAST of mRNA_A-nodosum_M_contig980.8.1 vs. uniprot
Match: D7G1L9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L9_ECTSI) HSP 1 Score: 139 bits (350), Expect = 9.500e-33 Identity = 89/283 (31.45%), Postives = 148/283 (52.30%), Query Frame = 1
Query: 28 VLYPLLMFVTTWRTIRLRVHPNEFLVFRYFNE--GYATNAS-PLVVLRKAFCAFWREQSLFVGADTGQWETVRIVGDEQLQSEWNWFRIGFEPMFTDYTKSGTWFVLVSLFEWFATACVATLEFDNGVVELALLLAIQMALLVTILWLRPFVNKVVNVLETLLVAMNVITVALEAVSAIVYEEIGQPRWVGSVASTLQVTGLVVFILPLLVEVVVIIFGVARKLSGAVCQRRARQI--TPAEDKTVQRMVLFYTLRKWVPAWFVMVHRNSVACITDTWRGLQR 861
V+YP+LM + ++RT R+RV P+ +VF+ E + T+ + P L K + S+F A+TG WETV DE+ E + FRIGFEP+F D+TK +WF + L E AC A L D+ VV+L L + + ++ RPF N ++N + L ++ ++A+ A +A ++ + + + + LQ+ LV I+P+ ++ +I G R+ ++ + T E K ++ + Y R W P W M+ N +AC+ DT RG +R
Sbjct: 303 VVYPVLMIILSYRTHRVRVAPDTLIVFKPVGEEENHGTDGTVPRSFLSKVRTGLKEDHSMFAWANTGAWETVETP-DEETVREGDQFRIGFEPLFVDFTKKASWFTVYFLLEMTGIACTAVLV-DDSVVQLFLFCGLHSLSFLLLVIFRPFANSIINTMGACLTLIDAASMAMLADTAHRWQRTSRAKRMDTAVVVLQLVALVALIIPMYIDASTVILGAIREKIRSLTKSNTCDDGRTEEEAKEERKFIRGYIFRAWGPTWCRMLGSNVLACVADTTRGTRR 583
BLAST of mRNA_A-nodosum_M_contig980.8.1 vs. uniprot
Match: A0A6H5JR60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR60_9PHAE) HSP 1 Score: 139 bits (349), Expect = 2.320e-32 Identity = 96/281 (34.16%), Postives = 146/281 (51.96%), Query Frame = 1
Query: 28 VLYPLLMFVTTWRTIRLRVHPNEFLVFRYFNEGYATNASPLVV--LRKAFCAFWREQ-SLFVGADTGQWETVRIVGDEQLQSEWNWFRIGFEPMFTDYTKSGTWFVLVSLFEWFATACVATLEFDNGVVELALLLAIQMALLVTILWLRPFVNKVVNVLETLLVAMNVITVALEAVSAIVYEEIGQPRWVGSVASTLQVTGLVVFILPLLVEVVVIIFGVARKLSGAVCQRRARQITPAEDKTVQRMVLFYTLRKWVPAWFVMVHRNSVACITDTWRGLQR 861
VL PLLMFVT +RT+ +RV PN L+F+ + EG + +P F + W E SLF AD QWET + D Q+ E +W RIGFEP+F +YTK GTWF+++SL EW A A V + +N +V+L L + + + +++L+PF N V N +E + A++ I++ + A SA+ +E G R A+ L + +V+ +L L E +R AR + YT R+W W ++ N AC DT G+++
Sbjct: 456 VLCPLLMFVTVFRTLLVRVRPNVLLIFKTYAEGGTSGDAPSRAGGFLSRFKSSWEENYSLFSWADKRQWETAQTP-DRQISREGDWCRIGFEPVFVEYTKRGTWFIVISLVEWVALALVGVMV-ENSIVQLVLFCGLPSVIFLILMFLKPFANSVTNNIEACVTAIDAISMGVFAASALWWE--GTDR-----AAHLNTSVVVLQLLSLFDE-----------------EREARDY-----------IRSYTRRQWCGTWCTVLGHNVFACARDTSEGVRK 699
BLAST of mRNA_A-nodosum_M_contig980.8.1 vs. uniprot
Match: A0A6H5JTJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTJ3_9PHAE) HSP 1 Score: 126 bits (317), Expect = 5.600e-28 Identity = 79/262 (30.15%), Postives = 133/262 (50.76%), Query Frame = 1
Query: 73 RLRVHPNEFLVFRYFNEGYATNASPLVVLRKAFCAFWREQSLFVGADTGQWETVRIVGDEQLQSEWNWFRIGFEPMFTDYTKSGTWFVLVSLFEWFATACVATLEFDNGVVELALLLAIQMALLVTILWLRPFVNKVVNVLETLLVAMNVITVALEAVSAIVYEEIGQPRWVGSVASTLQVTGLVVFILPLLVEVVVIIFGVARKLSGAVCQRRARQITPAEDKTVQRMVLFYTLRKWVPAWFVMVHRNSVACITDTWRGLQ 858
R+RV + +VF N+ + + K ++ SLF AD G W TV+ DE + + +WFRIGFEP++ D+T++G+WF + +L EW AC+A L DN V+ L A+ + ++ +PF N V+N + +++ + + + + A+SA + + V Q + V ++PL V+ +++++G R G V + R AE + + R TLR W WF MV N AC+ DT G++
Sbjct: 377 RVRVRSDALIVFTS-NKTDEGSTGKSTLYSKMVTGLKKDSSLFAWADKGHWNTVQTA-DEDARRDADWFRIGFEPLYADFTQAGSWFTVYTLIEWATLACIAVLV-DNSAVQCGLFCALHSMTFILLVVCKPFANSVLNTMGAIVMLTDAVCMGMLALSAGTFRMTAAADRIDIVVMVAQHLCIAVLVVPLYVDTLLLVWGAIRNRRGPV-KTRDNAAQRAEREFINRR----TLRLWGRTWFNMVGSNVFACVRDTREGIR 630
BLAST of mRNA_A-nodosum_M_contig980.8.1 vs. uniprot
Match: A0A6H5KV63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV63_9PHAE) HSP 1 Score: 115 bits (287), Expect = 2.020e-24 Identity = 90/324 (27.78%), Postives = 140/324 (43.21%), Query Frame = 1
Query: 1 VLIPSTVIFVLYPLLMFVTTWRTIRLRVHPNEFLVFRYFNEGYATNASPLVVLRKAFCAFWREQSLFVGADTGQWETVRIVGDEQLQSEWNWFRIGFEPMFTDYTKSGTWFVLVSLFE------------------WFATACVATLEFDNGVVELALLLAIQMALLVTILWLRPFVNK--------------------VVNVLETLLVAMNVITVALEAVSAIVYEEIGQPRWVGSVASTLQVTGLVVFILPLLVEVVVIIFGVARKLSGAVCQRRARQITPAEDKTVQRMVLFYTLRKWVPAWFVMVHRNSVACITDTWRGLQ 858
V+I + + V YP+LMFV RT +RV PN +P+V L K + + SLF A+ G WET +E ++ E WFRIGFEP+F D+TKSG WFV +L E W A C+ L D V++L+L A+ + ++ RPF N+ V+N + LV ++ + +AL AVSA +E V S LQ+ I+P+ ++ +++ R + + +K V + R W W ++ +N AC +DT G++
Sbjct: 209 VMIAAGLALVFYPILMFVAVLRTFFVRVRPN----------------TPIVFLSKVRAGWEEDHSLFAWANKGTWETAE-TDNEGIRREGQWFRIGFEPLFVDFTKSGAWFVAFTLVEGCLGLGHAVSFLLIYFAQWAALGCIGAL-IDESVLQLSLFCALHTLSFLLLVVFRPFANRLERKTQRVRFLDRLYFRAHSVINAMGAGLVGIDAVCMALLAVSASRWEGTVAAGKVDSAVMLLQLFARCALIIPIYIDTSLMLIEAIRSRLQKCTTTAPQHVRTEAEKVEDLFVRHFIRRSWPRTWCTILGKNIFACASDTSEGIR 514
BLAST of mRNA_A-nodosum_M_contig980.8.1 vs. uniprot
Match: D7G5F3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F3_ECTSI) HSP 1 Score: 105 bits (263), Expect = 9.040e-22 Identity = 58/151 (38.41%), Postives = 84/151 (55.63%), Query Frame = 1
Query: 28 VLYPLLMFVTTWRTIRLRVHPNEFLVFRYFNEGYATNASPLVVLRKAFCAFWREQSLFVGADTGQWETVRIVGDEQLQSEWNWFRIGFEPMFTDYTKSGTWFVLVSLFEWFATACVATLEFDNGVVELALLLAIQMALLVTILWLRPFVNK 480
V YP+LM RT R+RV + +VF NE + + K ++ SLF AD GQWETV+ DE + +WFRIGFEP+F D+T++G+WF++ +L EW AC+A L DN V+ L AI + ++ +PF N+
Sbjct: 240 VFYPVLMVAMVVRTHRVRVRSDALIVFTS-NESDEGSTGTSSIYSKTIAGLRKDSSLFAWADKGQWETVQTT-DEDARRNADWFRIGFEPLFADFTQAGSWFIVYTLIEWAVLACIAVLV-DNTAVQCGLFCAIHSMTFILLVACKPFANR 387 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig980.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig980.8.1 >prot_A-nodosum_M_contig980.8.1 ID=prot_A-nodosum_M_contig980.8.1|Name=mRNA_A-nodosum_M_contig980.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=380bp VLIPSTVIFVLYPLLMFVTTWRTIRLRVHPNEFLVFRYFNEGYATNASPLback to top mRNA from alignment at A-nodosum_M_contig980:32117..35677- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig980.8.1 ID=mRNA_A-nodosum_M_contig980.8.1|Name=mRNA_A-nodosum_M_contig980.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3561bp|location=Sequence derived from alignment at A-nodosum_M_contig980:32117..35677- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig980:32117..35677- >mRNA_A-nodosum_M_contig980.8.1 ID=mRNA_A-nodosum_M_contig980.8.1|Name=mRNA_A-nodosum_M_contig980.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1140bp|location=Sequence derived from alignment at A-nodosum_M_contig980:32117..35677- (Ascophyllum nodosum dioecious)back to top |