mRNA_A-nodosum_M_contig98.71.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig98.71.1
Unique NamemRNA_A-nodosum_M_contig98.71.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig98.71.1 vs. uniprot
Match: A0A6H5KPD8_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD8_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.460e-22
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:   79 RYVEEKLNAAWSSTMRVGKWVSFDEQMVKCTALFSRGIQRYNPLKPIKHGIKCWAACCVSGYCYVSCVDGGFTGD 303
            R +E+ LN  WS  +  G W+S+DEQMVK TA     + RYN  KPIKHGIKCWA CC SGY +V  +DGGF+GD
Sbjct:  107 RKLEDVLNKCWSELVEPGAWLSYDEQMVKSTARVMLALMRYNKAKPIKHGIKCWAICCPSGYSFVQSIDGGFSGD 181
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BLAST of mRNA_A-nodosum_M_contig98.71.1 vs. uniprot
Match: A0A6H5KQZ5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ5_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.410e-21
Identity = 42/75 (56.00%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:   79 RYVEEKLNAAWSSTMRVGKWVSFDEQMVKCTALFSRGIQRYNPLKPIKHGIKCWAACCVSGYCYVSCVDGGFTGD 303
            R +E+  N  WS  +  G W+S+DEQMVK TA     + RYN  KPIK+GIKCWA CC SGYC+V  +DGGF+GD
Sbjct:   41 RKLEDVFNKCWSELVEPGAWLSYDEQMVKSTARVMFALMRYNKAKPIKNGIKCWAICCPSGYCFVQSIDGGFSGD 115
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BLAST of mRNA_A-nodosum_M_contig98.71.1 vs. uniprot
Match: A0A6H5KG44_9PHAE (DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG44_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 2.600e-20
Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:   79 RYVEEKLNAAWSSTMRVGKWVSFDEQMVKCTALFSRGIQRYNPLKPIKHGIKCWAACCVSGYCYVSCVDGGFTGD 303
            R +E+ LN  WS  +  G W+S+DEQMVK TA     + R+N  KPIK GIK WA CC SGYC+V  +DGGF+GD
Sbjct:    3 RELEDLLNECWSKLVEPGAWLSYDEQMVKSTARAMFALMRFNKTKPIKTGIKGWAICCPSGYCFVQSIDGGFSGD 77
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BLAST of mRNA_A-nodosum_M_contig98.71.1 vs. uniprot
Match: A0A6H5K5P5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5P5_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.720e-20
Identity = 43/75 (57.33%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:   79 RYVEEKLNAAWSSTMRVGKWVSFDEQMVKCTALFSRGIQRYNPLKPIKHGIKCWAACCVSGYCYVSCVDGGFTGD 303
            R  E+ LN  WSS + +G WVS+DEQMVK TA    G+ R+NP KPIKHGIK +A  C +GYCY+  +DGGF GD
Sbjct:  344 RAFEDALNTCWSSLVELGGWVSYDEQMVKGTARAMHGLMRFNPQKPIKHGIKRFACWCWTGYCYLQSIDGGFYGD 418
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BLAST of mRNA_A-nodosum_M_contig98.71.1 vs. uniprot
Match: A0A6H5JHH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH7_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.940e-17
Identity = 40/73 (54.79%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:   85 VEEKLNAAWSSTMRVGKWVSFDEQMVKCTALFSRGIQRYNPLKPIKHGIKCWAACCVSGYCYVSCVDGGFTGD 303
            +E+ LN  WS  +  G  +S DEQMVK TA     + R+N  KPIK GIKCWA CC SGYC+V  +DGGF+GD
Sbjct:  206 LEDVLNKCWSELVDPGACLSHDEQMVKSTARVMFMLMRFNKSKPIKLGIKCWAICCPSGYCFVQSIDGGFSGD 278
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BLAST of mRNA_A-nodosum_M_contig98.71.1 vs. uniprot
Match: A0A6H5KS27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS27_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 6.380e-17
Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:   85 VEEKLNAAWSSTMRVGKWVSFDEQMVKCTALFSRGIQRYNPLKPIKHGIKCWAACCVSGYCYVSCVDGGFTGD 303
            +E+ LN AW+  M   +W+ +DEQMVK  + ++  + R+ P KPI HG+K  A C V GYC+VS VDGGF+GD
Sbjct:   85 LEDILNTAWTENMDFNQWLCYDEQMVKTVSRYAHFLIRHQPKKPITHGMKMLAICDVEGYCFVSSVDGGFSGD 157
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BLAST of mRNA_A-nodosum_M_contig98.71.1 vs. uniprot
Match: A0A6H5K972_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K972_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 6.790e-10
Identity = 29/51 (56.86%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   79 RYVEEKLNAAWSSTMRVGKWVSFDEQMVKCTALFSRGIQRYNPLKPIKHGI 231
            R  E+ LN  WSS + +  WVS+DEQMVK TA    G+ R+NP KPIKHGI
Sbjct:  168 RAFEDALNTCWSSLVELEGWVSYDEQMVKSTARAMHGLMRFNPQKPIKHGI 218
[Close]
BLAST of mRNA_A-nodosum_M_contig98.71.1 vs. uniprot
Match: A0A6H5KGW0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGW0_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 3.910e-6
Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:  196 RYNPLKPIKHGIKCWAACCVSGYCYVSCVDGGFT 297
            R+N  KPIK GIK WA CC SGYC+V  +DGGF+
Sbjct:    2 RFNKAKPIKTGIKGWAICCPSGYCFVQSIDGGFS 35
[Close]
BLAST of mRNA_A-nodosum_M_contig98.71.1 vs. uniprot
Match: A0A6H5JC56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC56_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 3.780e-5
Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 1 
Query:  226 GIKCWAACCVSGYCYVSCVDGGFTGD 303
            GIKCWA CC SGYC+V  +DGGF+GD
Sbjct:  164 GIKCWAGCCPSGYCFVQSIDGGFSGD 189
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig98.71.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KPD8_9PHAE1.460e-2257.33DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KQZ5_9PHAE1.410e-2156.00DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KG44_9PHAE2.600e-2054.67DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ecto... [more]
A0A6H5K5P5_9PHAE2.720e-2057.33DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JHH7_9PHAE1.940e-1754.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KS27_9PHAE6.380e-1749.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K972_9PHAE6.790e-1056.86DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
A0A6H5KGW0_9PHAE3.910e-664.71DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JC56_9PHAE3.780e-573.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig98contigA-nodosum_M_contig98:734503..735682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog159749.K0T9J8
PFAMsDDE_Tnp_1_7,Tnp_zf-ribbon_2
Model size305
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue0.000219
EggNOG OGs28PUT@1|root,2QWHD@2759|Eukaryota
DescriptionTransposase IS4
Cds size183
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870513.0619323-CDS-A-nodosum_M_contig98:734502..7345791680870513.0619323-CDS-A-nodosum_M_contig98:734502..734579Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig98 734503..734579 -
1680870513.145966-CDS-A-nodosum_M_contig98:734758..7348641680870513.145966-CDS-A-nodosum_M_contig98:734758..734864Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig98 734759..734864 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870513.1578832-UTR-A-nodosum_M_contig98:734864..7349041680870513.1578832-UTR-A-nodosum_M_contig98:734864..734904Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig98 734865..734904 -
1680870513.1716704-UTR-A-nodosum_M_contig98:735415..7354661680870513.1716704-UTR-A-nodosum_M_contig98:735415..735466Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig98 735416..735466 -
1680870513.1855788-UTR-A-nodosum_M_contig98:735653..7356821680870513.1855788-UTR-A-nodosum_M_contig98:735653..735682Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig98 735654..735682 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig98.71.1prot_A-nodosum_M_contig98.71.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig98 734503..734864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig98.71.1

>prot_A-nodosum_M_contig98.71.1 ID=prot_A-nodosum_M_contig98.71.1|Name=mRNA_A-nodosum_M_contig98.71.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=61bp
MRVGKWVSFDEQMVKCTALFSRGIQRYNPLKPIKHGIKCWAACCVSGYCY
VSCVDGGFTGD
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mRNA from alignment at A-nodosum_M_contig98:734503..735682-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig98.71.1 ID=mRNA_A-nodosum_M_contig98.71.1|Name=mRNA_A-nodosum_M_contig98.71.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1180bp|location=Sequence derived from alignment at A-nodosum_M_contig98:734503..735682- (Ascophyllum nodosum dioecious)
CTGCTGTCTTCGAGTACATCTTGGAGCAGGTAATGTCAAAAACTGTTTTG
TTCACCAGACCCGATGCATGAAATAATGCATACATTATTTCTTTCCTGCT
CAACTCTTACTCGTCGTTACACCTCTGATGTACAATGATTTGCATTTATA
TTTTTTCCTTTCTGATTTTGTGTCCCAACATACTTTCTCCGCCACGTTGG
ACGCTGTACCATCCAGACGAACGATTACTGGCGGCACTGCACCATGACTC
ACCCATCTGAAGTCGAGGCGCGCGAAAACAATCAGACTGCAGGTCATCGT
AAGCAGAACGGAAAACTGGGCAATGCTCGCACCCCGCTGGCGGGTATACT
CTAGACCAGCTGATGGGGCTATCGGGATCATGCTTATGCCCGGGATTGTG
AACACTAAACGCATGAGTTTACACTGGAGTCTTTCTCCTAACTACAACTT
CCCTCGCGTACGAAACTGTATGAAAAGAGACGAGTTTTACCTCCTCTACA
GCCGACACCTCCGCCTACGGAAGTCCCCCGGGCCAGGACCACAGGATGCC
GCGTACGATACAAAGTACCACATACGGTAAGTATAGGGCAAGGGCGGATG
GGGCGTTTCACTTCGGCGCATAATTTACGCTACGAGCCACAATTTCGTCT
GTTGTACAGATGATTAATGTGTATATTTTTTGCCCTCTATTTCTACAGAT
GCCGCGAAGAATCGACTAAGTATAGTTCATGTGTACTACTTCCTCCACTC
TTACCACGGTACGTTCTTGATACCATAGATATGTGGAGGAAAAGCTCAAC
GCAGCGTGGAGTTCAACCATGAGAGTAGGAAAGTGGGTTTCGTTCGACGA
ACAGATGGTCAAGTGCACAGCGCTCTTCTCTCGAGGCATTCAGCGGTATA
ATCCACTCAAGCCCATCAAGCATGGTGAGTTTTTTTTACATAAACAGATT
GGGAAGCTATGTATCCACCGCAGCATCATGTAAAAAGTGAGAAGAATATG
GGTTCAGAGCCATCATGATCACAGTCGGGGCAGTCCAATAGTTTACATCC
AAATTTGACATCCATACACACACCTGCTCGTAACTGCGTACTGTACATTC
CAGGAATAAAGTGTTGGGCAGCCTGCTGCGTATCTGGCTATTGCTACGTC
TCCTGCGTCGATGGCGGTTTCACGGGCGAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig98:734503..735682-

>mRNA_A-nodosum_M_contig98.71.1 ID=mRNA_A-nodosum_M_contig98.71.1|Name=mRNA_A-nodosum_M_contig98.71.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=183bp|location=Sequence derived from alignment at A-nodosum_M_contig98:734503..735682- (Ascophyllum nodosum dioecious)
ATGAGAGTAGGAAAGTGGGTTTCGTTCGACGAACAGATGGTCAAGTGCAC
AGCGCTCTTCTCTCGAGGCATTCAGCGGTATAATCCACTCAAGCCCATCA
AGCATGGAATAAAGTGTTGGGCAGCCTGCTGCGTATCTGGCTATTGCTAC
GTCTCCTGCGTCGATGGCGGTTTCACGGGCGAT
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