mRNA_A-nodosum_M_contig98.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig98.6.1
Unique NamemRNA_A-nodosum_M_contig98.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig98.6.1 vs. uniprot
Match: A0A7S0CL37_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CL37_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 3.170e-8
Identity = 23/26 (88.46%), Postives = 26/26 (100.00%), Query Frame = -3 
Query:  341 LKNGRITKPLVAWCIGTCASIFPFEV 418
            LK+GRITKP++AWCIGTCASIFPFEV
Sbjct:   10 LKSGRITKPIIAWCIGTCASIFPFEV 35
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BLAST of mRNA_A-nodosum_M_contig98.6.1 vs. uniprot
Match: B7FYT1_PHATC (ATP-citrate synthase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYT1_PHATC)

HSP 1 Score: 59.3 bits (142), Expect = 1.560e-7
Identity = 30/65 (46.15%), Postives = 39/65 (60.00%), Query Frame = -3 
Query:  224 LKNGRITKPLVAWCIGTCASIFPFEVINKLLSTMSICASW*ALAHGHHLSLHTVALHVVEALWQF 418
            LK+GRI+KPLVAWCIGTCASIFPFEV  +     ++       A   + +L     HV E  ++F
Sbjct:  717 LKSGRISKPLVAWCIGTCASIFPFEV--QFGHAGALARGDMETARAKNKALKEAGAHVPENFFEF 779
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BLAST of mRNA_A-nodosum_M_contig98.6.1 vs. uniprot
Match: A0A6U1PJ67_9STRA (ATP citrate synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1PJ67_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.890e-7
Identity = 24/26 (92.31%), Postives = 26/26 (100.00%), Query Frame = -3 
Query:  341 LKNGRITKPLVAWCIGTCASIFPFEV 418
            +K+GRITKPLVAWCIGTCASIFPFEV
Sbjct:   84 IKDGRITKPLVAWCIGTCASIFPFEV 109
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BLAST of mRNA_A-nodosum_M_contig98.6.1 vs. uniprot
Match: A0A7S2R5L9_9STRA (ATP citrate synthase (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R5L9_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.800e-7
Identity = 23/26 (88.46%), Postives = 26/26 (100.00%), Query Frame = -3 
Query:  341 LKNGRITKPLVAWCIGTCASIFPFEV 418
            +KNGRI+KP+VAWCIGTCASIFPFEV
Sbjct:  480 IKNGRISKPIVAWCIGTCASIFPFEV 505
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BLAST of mRNA_A-nodosum_M_contig98.6.1 vs. uniprot
Match: A0A1Z5JU84_FISSO (ATP-citrate synthase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JU84_FISSO)

HSP 1 Score: 58.5 bits (140), Expect = 2.900e-7
Identity = 33/72 (45.83%), Postives = 39/72 (54.17%), Query Frame = -3 
Query:  224 LKNGRITKPLVAWCIGTCASIFPFEVINKLLSTMSICASW*ALAHGH-------HLSLHTVALHVVEALWQF 418
            LK GRI+KP+VAWCIGTCASIFPFEV               ALAHG        + +L     HV E  ++F
Sbjct:  712 LKEGRISKPMVAWCIGTCASIFPFEVQFGHAG---------ALAHGDLETARAKNQALKEAGAHVPENFFEF 774
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BLAST of mRNA_A-nodosum_M_contig98.6.1 vs. uniprot
Match: D7FN48_ECTSI (ATP-citrate synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN48_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 2.900e-7
Identity = 24/26 (92.31%), Postives = 26/26 (100.00%), Query Frame = -3 
Query:  341 LKNGRITKPLVAWCIGTCASIFPFEV 418
            LK+GRITKP+VAWCIGTCASIFPFEV
Sbjct:  732 LKSGRITKPVVAWCIGTCASIFPFEV 757
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BLAST of mRNA_A-nodosum_M_contig98.6.1 vs. uniprot
Match: A0A7S1V7K5_9STRA (ATP-citrate synthase n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V7K5_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.900e-7
Identity = 23/26 (88.46%), Postives = 26/26 (100.00%), Query Frame = -3 
Query:  341 LKNGRITKPLVAWCIGTCASIFPFEV 418
            +K+GRITKPL+AWCIGTCASIFPFEV
Sbjct:  745 IKSGRITKPLIAWCIGTCASIFPFEV 770
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BLAST of mRNA_A-nodosum_M_contig98.6.1 vs. uniprot
Match: A0A1W0ABY9_9STRA (ATP-citrate synthase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ABY9_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 8.880e-7
Identity = 23/26 (88.46%), Postives = 24/26 (92.31%), Query Frame = -3 
Query:  341 LKNGRITKPLVAWCIGTCASIFPFEV 418
            +KNG ITKPLVAWCIGTCA IFPFEV
Sbjct:   20 IKNGVITKPLVAWCIGTCAKIFPFEV 45
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BLAST of mRNA_A-nodosum_M_contig98.6.1 vs. uniprot
Match: A0A7S2UBX9_9STRA (ATP citrate synthase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UBX9_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 9.410e-7
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = -3 
Query:  341 LKNGRITKPLVAWCIGTCASIFPFEV 418
            +K+GRI KPLVAWCIGTCASIFPFEV
Sbjct:  264 IKSGRINKPLVAWCIGTCASIFPFEV 289
[Close]
BLAST of mRNA_A-nodosum_M_contig98.6.1 vs. uniprot
Match: A0A067CT97_SAPPC (ATP-citrate synthase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CT97_SAPPC)

HSP 1 Score: 56.6 bits (135), Expect = 1.360e-6
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = -3 
Query:  341 LKNGRITKPLVAWCIGTCASIFPFEV 418
            L++GRITKPLVAWCIGTCA IFPFEV
Sbjct:  721 LQDGRITKPLVAWCIGTCAKIFPFEV 746
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig98.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0CL37_9STRA3.170e-888.46Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
B7FYT1_PHATC1.560e-746.15ATP-citrate synthase n=2 Tax=Phaeodactylum tricorn... [more]
A0A6U1PJ67_9STRA1.890e-792.31ATP citrate synthase n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2R5L9_9STRA2.800e-788.46ATP citrate synthase (Fragment) n=1 Tax=Eucampia a... [more]
A0A1Z5JU84_FISSO2.900e-745.83ATP-citrate synthase n=2 Tax=Fistulifera solaris T... [more]
D7FN48_ECTSI2.900e-792.31ATP-citrate synthase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7S1V7K5_9STRA2.900e-788.46ATP-citrate synthase n=2 Tax=Grammatophora oceanic... [more]
A0A1W0ABY9_9STRA8.880e-788.46ATP-citrate synthase (Fragment) n=1 Tax=Thraustoth... [more]
A0A7S2UBX9_9STRA9.410e-788.46ATP citrate synthase n=1 Tax=Attheya septentrional... [more]
A0A067CT97_SAPPC1.360e-688.46ATP-citrate synthase n=3 Tax=Saprolegniaceae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig98contigA-nodosum_M_contig98:114515..115108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size422
Hectar predicted targeting categoryother localisation
Exons2
Cds size321
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870506.818325-UTR-A-nodosum_M_contig98:114514..1146131680870506.818325-UTR-A-nodosum_M_contig98:114514..114613Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig98 114515..114613 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870506.8375502-CDS-A-nodosum_M_contig98:114613..1148531680870506.8375502-CDS-A-nodosum_M_contig98:114613..114853Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig98 114614..114853 -
1680870506.852448-CDS-A-nodosum_M_contig98:115027..1151081680870506.852448-CDS-A-nodosum_M_contig98:115027..115108Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig98 115028..115108 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig98.6.1prot_A-nodosum_M_contig98.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig98 114614..115108 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig98.6.1

>prot_A-nodosum_M_contig98.6.1 ID=prot_A-nodosum_M_contig98.6.1|Name=mRNA_A-nodosum_M_contig98.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=107bp
REIEARDKRQDTERGDGNTARVSFGWQECDVFCGHDEKRFRPKYYGISAL
GLIGPISIGCTPAAWNITDLYFTRGIATEPQQHEERQCVDSSGGRVQAPT
RMHRST*
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mRNA from alignment at A-nodosum_M_contig98:114515..115108-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig98.6.1 ID=mRNA_A-nodosum_M_contig98.6.1|Name=mRNA_A-nodosum_M_contig98.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=594bp|location=Sequence derived from alignment at A-nodosum_M_contig98:114515..115108- (Ascophyllum nodosum dioecious)
AGAGAAATAGAGGCAAGGGACAAAAGACAAGATACAGAGAGAGGCGATGG
CAACACGGCGAGGGTGTCATTTGGGTGGCAGGTACGAGTATGTGGTTCAC
CTCTTGTAGACCTCATTGATCTTGGAAGGGAACTCGTCGAAAGACGCGGG
AACTACCGCACCAGCCGCCGCTAGGGCCGCATTCTTGTCGGCCGCGGTCT
CACCCTGACCCCGTGCACACGCTCCTGCGTGGCCGAACTGCACCTGATCT
CGCAGGAATGTGACGTATTTTGTGGACACGACGAAAAAAGGTTTAGACCA
AAATATTACGGGATTTCTGCCCTCGGTCTAATCGGCCCAATCAGTATCGG
TTGCACACCTGCTGCGTGGAATATTACCGACCTTTACTTCACCCGCGGAA
TTGCCACAGAGCCTCAACAACATGAAGAGCGACAGTGTGTAGACTCAAGT
GGTGGCCGTGTGCAAGCGCCTACCAGGATGCACAGATCGACATAGTTGAC
AACAGTTTATTTATCACCTCGAAGGGGAAGATTGACGCGCAGGTGCCAAT
ACACCACGCCACAAGGGGCTTGGTAATCCGCCCGTTCTTGAGCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig98:114515..115108-

>mRNA_A-nodosum_M_contig98.6.1 ID=mRNA_A-nodosum_M_contig98.6.1|Name=mRNA_A-nodosum_M_contig98.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=321bp|location=Sequence derived from alignment at A-nodosum_M_contig98:114515..115108- (Ascophyllum nodosum dioecious)
AGAGAAATAGAGGCAAGGGACAAAAGACAAGATACAGAGAGAGGCGATGG
CAACACGGCGAGGGTGTCATTTGGGTGGCAGGAATGTGACGTATTTTGTG
GACACGACGAAAAAAGGTTTAGACCAAAATATTACGGGATTTCTGCCCTC
GGTCTAATCGGCCCAATCAGTATCGGTTGCACACCTGCTGCGTGGAATAT
TACCGACCTTTACTTCACCCGCGGAATTGCCACAGAGCCTCAACAACATG
AAGAGCGACAGTGTGTAGACTCAAGTGGTGGCCGTGTGCAAGCGCCTACC
AGGATGCACAGATCGACATAG
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