mRNA_A-nodosum_M_contig98.48.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig98.48.1
Unique NamemRNA_A-nodosum_M_contig98.48.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig98.48.1 vs. uniprot
Match: A0A2R4QQ89_9PHAE (Cytochrome c oxidase subunit 3 n=8 Tax=Fucales TaxID=3009 RepID=A0A2R4QQ89_9PHAE)

HSP 1 Score: 551 bits (1420), Expect = 1.950e-198
Identity = 267/272 (98.16%), Postives = 272/272 (100.00%), Query Frame = 1
Query:    1 MKSQSKLIQRHPFHLVDPSPWPFVAALGGLSLTFGGVLYMHNYSGGGQLLILGIITILYVMFTWWRDIIREALFEGQHTIAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVIFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLSIYWWGFNVII 816
            MKSQSKLIQRHPFHLVDPSPWPFVAALGGLSLTFGGVLYMHNYSGGGQLLILG++TILYVMFTWWRDIIREALFEGQHT+AVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVIFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFL+IYWWGFNV+I
Sbjct:    1 MKSQSKLIQRHPFHLVDPSPWPFVAALGGLSLTFGGVLYMHNYSGGGQLLILGVLTILYVMFTWWRDIIREALFEGQHTLAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVIFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNVVI 272          
BLAST of mRNA_A-nodosum_M_contig98.48.1 vs. uniprot
Match: A0A0U1V199_SARFS (Cytochrome c oxidase subunit 3 n=199 Tax=Sargassaceae TaxID=3014 RepID=A0A0U1V199_SARFS)

HSP 1 Score: 511 bits (1315), Expect = 1.980e-182
Identity = 241/272 (88.60%), Postives = 258/272 (94.85%), Query Frame = 1
Query:    1 MKSQSKLIQRHPFHLVDPSPWPFVAALGGLSLTFGGVLYMHNYSGGGQLLILGIITILYVMFTWWRDIIREALFEGQHTIAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVIFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLSIYWWGFNVII 816
            M+ Q+K +QRHPFHLVDPSPWPFVAALGGLS TFGGVLYMHNY GGGQLL LG+ITILYVMFTWWRD+IREA FEGQHT AVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSL+PVFNIGGVWPP+GIEAISPWGLPLLNTIILLSSGASVTW+HHAIV G K+EAL GL +T +FAVIFT LQGFEY++APF+MSDSVYGSVFFMATGFHGFHVIIGTIFL +CTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFL+IYWWGFNVI+
Sbjct:    1 MREQAKTVQRHPFHLVDPSPWPFVAALGGLSSTFGGVLYMHNYDGGGQLLCLGLITILYVMFTWWRDVIREASFEGQHTAAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLSPVFNIGGVWPPAGIEAISPWGLPLLNTIILLSSGASVTWSHHAIVGGFKREALLGLVITILFAVIFTALQGFEYVNAPFAMSDSVYGSVFFMATGFHGFHVIIGTIFLCVCTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNVIV 272          
BLAST of mRNA_A-nodosum_M_contig98.48.1 vs. uniprot
Match: Q2TUF2_9PHAE (Cytochrome c oxidase subunit 3 n=14 Tax=Phaeophyceae TaxID=2870 RepID=Q2TUF2_9PHAE)

HSP 1 Score: 496 bits (1276), Expect = 1.740e-176
Identity = 236/272 (86.76%), Postives = 251/272 (92.28%), Query Frame = 1
Query:    1 MKSQSKLIQRHPFHLVDPSPWPFVAALGGLSLTFGGVLYMHNYSGGGQLLILGIITILYVMFTWWRDIIREALFEGQHTIAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVIFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLSIYWWGFNVII 816
            MKS+ K+IQRHPFHLVDPSPWP VAALGGL LTFGGVL+MHNY+GGGQLL LG+ITILYVMFTWWRDIIREA FEGQHT+AVQQGLRMGMILFIVSEVMFFFAFFWAFFTSS++PVFNIGGVWPP GIEAISPWGLP LNTI+LLSSGASVTWAHHAIV G KKEAL GL VT  FAV FT LQGFEY+ APF+MSD VYGSVF+MATGFHGFHVIIGTIFL ICT RLY  HFSRQRHFGFEAAAWYWHFVDVVWLFLF++IYWWGFNVI+
Sbjct:    1 MKSKIKMIQRHPFHLVDPSPWPLVAALGGLCLTFGGVLFMHNYNGGGQLLSLGVITILYVMFTWWRDIIREAAFEGQHTLAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSISPVFNIGGVWPPIGIEAISPWGLPFLNTILLLSSGASVTWAHHAIVGGFKKEALQGLGVTLAFAVAFTALQGFEYMHAPFAMSDGVYGSVFYMATGFHGFHVIIGTIFLAICTLRLYFHHFSRQRHFGFEAAAWYWHFVDVVWLFLFITIYWWGFNVIV 272          
BLAST of mRNA_A-nodosum_M_contig98.48.1 vs. uniprot
Match: E6ZES3_ECTSI (Cytochrome c oxidase subunit 3 n=154 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES3_ECTSI)

HSP 1 Score: 482 bits (1240), Expect = 5.330e-171
Identity = 227/271 (83.76%), Postives = 248/271 (91.51%), Query Frame = 1
Query:    1 MKSQSKLIQRHPFHLVDPSPWPFVAALGGLSLTFGGVLYMHNYSGGGQLLILGIITILYVMFTWWRDIIREALFEGQHTIAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVIFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLSIYWWGFNVI 813
            MK+++K++QRHPFHLVDPSPWP VAA GGLSLTFGGVL+MHNY GGG+LL LG+ TILYVMFTWWRDIIREALFEGQHT AVQQGLRMGMILFIVSEVMFFFAFFWAFFTSS++PVFNIGGVWPP+ I AISPWGLP +NTI+LLSSGASVTWAHHAIV G KKEA+ GL +T  FA+ FT +QGFEY +APFSMSD VYGSVF+MATGFHGFHVIIGTIFL ICT RL+L HFSRQ HFGFEAAAWYWHFVDVVWLFLFL+IYWWGFNVI
Sbjct:    1 MKAKAKMVQRHPFHLVDPSPWPLVAAFGGLSLTFGGVLFMHNYVGGGELLCLGVFTILYVMFTWWRDIIREALFEGQHTYAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSISPVFNIGGVWPPTDIIAISPWGLPFVNTILLLSSGASVTWAHHAIVGGFKKEAMQGLGITLGFAIAFTAMQGFEYSAAPFSMSDGVYGSVFYMATGFHGFHVIIGTIFLSICTIRLFLGHFSRQHHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNVI 271          
BLAST of mRNA_A-nodosum_M_contig98.48.1 vs. uniprot
Match: COX3_PYLLI (Cytochrome c oxidase subunit 3 n=161 Tax=Phaeophyceae TaxID=2870 RepID=COX3_PYLLI)

HSP 1 Score: 480 bits (1236), Expect = 2.170e-170
Identity = 225/270 (83.33%), Postives = 244/270 (90.37%), Query Frame = 1
Query:    1 MKSQSKLIQRHPFHLVDPSPWPFVAALGGLSLTFGGVLYMHNYSGGGQLLILGIITILYVMFTWWRDIIREALFEGQHTIAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVIFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLSIYWWGFNV 810
            MKS +K+IQRHPFHLVDPSPWP VAALGGLSLTFGGVL+MHNY GGG+LL LG  TILYVMFTWWRD+IREALFEGQHT+AVQQGLRMGMILFIVSE+MFFFAF WAFFTSS++PVFNIGGVWPP+ + AISPWGLP LNTI+LLSSGASVTWAHHAIV G KKEA+ GL+VT  FA+ FT +QGFEY  APF MSD VYGSVF+MATGFHGFHVIIGTIFL ICT RLYL HFS Q HFGFEAAAWYWHFVDVVWLFLFL+IYWWGFN+
Sbjct:    1 MKSTAKMIQRHPFHLVDPSPWPLVAALGGLSLTFGGVLFMHNYEGGGELLCLGFFTILYVMFTWWRDVIREALFEGQHTLAVQQGLRMGMILFIVSEIMFFFAFXWAFFTSSISPVFNIGGVWPPTDVVAISPWGLPFLNTILLLSSGASVTWAHHAIVGGLKKEAMQGLSVTLAFAIAFTAMQGFEYSGAPFGMSDGVYGSVFYMATGFHGFHVIIGTIFLFICTIRLYLSHFSCQHHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNI 270          
BLAST of mRNA_A-nodosum_M_contig98.48.1 vs. uniprot
Match: A0A5K7TM11_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=15 Tax=Chorda TaxID=45033 RepID=A0A5K7TM11_9PHAE)

HSP 1 Score: 447 bits (1149), Expect = 1.580e-157
Identity = 209/247 (84.62%), Postives = 229/247 (92.71%), Query Frame = 1
Query:    1 MKSQSKLIQRHPFHLVDPSPWPFVAALGGLSLTFGGVLYMHNYSGGGQLLILGIITILYVMFTWWRDIIREALFEGQHTIAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVIFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAW 741
            MK ++ ++QRHPFHLVDPSPWP VA+LGGLSLTFGGVL+MHNY GGG+LL LG+ITILYVMFTWWRD+IREALFEGQHT+AVQQGLR+GMILFIVSEVMFFFAFFWAFFTSS++PVFNIGGVWPP+GIEAISPWGLP LNTI+LLSSGASVTWAHHAIV G KKEAL GL VT  FA+ FT +QGFEY+SAPF MSD VYGSVF+MATGFHGFHVIIGTIFL +CTFRLYLDHFSRQ HFGFEAAAW
Sbjct:    1 MKPKANMVQRHPFHLVDPSPWPLVASLGGLSLTFGGVLFMHNYKGGGELLCLGVITILYVMFTWWRDVIREALFEGQHTLAVQQGLRLGMILFIVSEVMFFFAFFWAFFTSSVSPVFNIGGVWPPTGIEAISPWGLPFLNTILLLSSGASVTWAHHAIVGGFKKEALQGLVVTLAFAITFTLIQGFEYMSAPFGMSDGVYGSVFYMATGFHGFHVIIGTIFLAVCTFRLYLDHFSRQHHFGFEAAAW 247          
BLAST of mRNA_A-nodosum_M_contig98.48.1 vs. uniprot
Match: A0A4Y5T8S8_9PHAE (Cytochrome c oxidase subunit 3 n=57 Tax=Dictyotaceae TaxID=2874 RepID=A0A4Y5T8S8_9PHAE)

HSP 1 Score: 446 bits (1146), Expect = 9.660e-157
Identity = 212/267 (79.40%), Postives = 231/267 (86.52%), Query Frame = 1
Query:    1 MKSQSKLIQRHPFHLVDPSPWPFVAALGGLSLTFGGVLYMHNYSGGGQLLILGIITILYVMFTWWRDIIREALFEGQHTIAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVIFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLSIYWWG 801
            M SQ K+  RHPFHLVDPSPWP VA++G LSLTFGGV++MHNYSGGGQLL LG++TILYVM  WWRDIIREA FEG HT +VQ GLR+GMILFIVSEVMFFFAFFWAFFTSSL+PVFNIGGVWPPSG++ ISPWGLPLLNT++LLSSGA+VTWAHHAIV G K EA   L VT  FA+ FT  Q  EY+ APFS+SDSVYGS FFMATGFHGFHVIIGTIFL IC  RLY+DHFSRQ HFGFEAAAWYWHFVDVVWL LFL IYWWG
Sbjct:    1 MISQVKVSHRHPFHLVDPSPWPIVASIGALSLTFGGVMFMHNYSGGGQLLSLGVLTILYVMGIWWRDIIREASFEGHHTSSVQDGLRLGMILFIVSEVMFFFAFFWAFFTSSLSPVFNIGGVWPPSGLDVISPWGLPLLNTVLLLSSGATVTWAHHAIVGGLKYEAQSALYVTLTFAIYFTVFQILEYVEAPFSISDSVYGSTFFMATGFHGFHVIIGTIFLSICAVRLYVDHFSRQHHFGFEAAAWYWHFVDVVWLILFLGIYWWG 267          
BLAST of mRNA_A-nodosum_M_contig98.48.1 vs. uniprot
Match: A0A0A7LG50_SACLA (Cytochrome c oxidase subunit 3 n=1 Tax=Saccharina latissima TaxID=309358 RepID=A0A0A7LG50_SACLA)

HSP 1 Score: 442 bits (1136), Expect = 3.720e-155
Identity = 208/272 (76.47%), Postives = 236/272 (86.76%), Query Frame = 1
Query:    1 MKSQSKLIQRHPFHLVDPSPWPFVAALGGLSLTFGGVLYMHNYSGGGQLLILGIITILYVMFTWWRDIIREALFEGQHTIAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVIFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLSIYWWGFNVII 816
            MK+++K++QRHPFHL  PSPWP VAALGGLSLTFGGVL+MHNY GGG+LL LG+ TILYVMFTWWRD++RE LFEGQHT++VQQGLRMGMILFIVSE+MFFFAF   FFTSS++PVFNIGGVWPP+GIEAISPWGLP LNTI+LLSSGASVTWAHHAIVAG KKEAL GL VT  FA+ FT +QG EY+ + + +   ++  +     GFHGFHVIIGT+FL ICT RLY DHFSRQ HFGFEAAAWYWHFVDVVWLFLFL+IYWWGFNVII
Sbjct:    1 MKAKAKMVQRHPFHLGAPSPWPLVAALGGLSLTFGGVLFMHNYKGGGELLCLGVFTILYVMFTWWRDVVREGLFEGQHTLSVQQGLRMGMILFIVSEIMFFFAFXXXFFTSSISPVFNIGGVWPPAGIEAISPWGLPFLNTILLLSSGASVTWAHHAIVAGFKKEALQGLGVTLAFAIAFTGMQGVEYMHSFWHVGRGIWFCILHGYRGFHGFHVIIGTLFLAICTLRLYWDHFSRQHHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNVII 272          
BLAST of mRNA_A-nodosum_M_contig98.48.1 vs. uniprot
Match: A0A0U5B4J4_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U5B4J4_9PHAE)

HSP 1 Score: 433 bits (1114), Expect = 3.160e-152
Identity = 205/245 (83.67%), Postives = 225/245 (91.84%), Query Frame = 1
Query:    1 MKSQSKLIQRHPFHLVDPSPWPFVAALGGLSLTFGGVLYMHNYSGGGQLLILGIITILYVMFTWWRDIIREALFEGQHTIAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVIFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAA 735
            M+ QSK+ QRHPFHLVDPSPWP VAALGGLSLTFGGVL+MHNYSGGG+LL LG++ ILYVMFTWWRDIIREALFEG HT+AVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSL+PVFNIGGVWPP+G++AISPWGLP  NTI+L+SSGASVTWAHHAIV G KKEAL GL VT  FAV FT +QGFEY++APF+MSD VYGSVF+MATGFHGFHVIIGTIFL +CT RLY +HFSRQRHFGFEAA
Sbjct:    1 MRYQSKMSQRHPFHLVDPSPWPLVAALGGLSLTFGGVLFMHNYSGGGKLLSLGVLIILYVMFTWWRDIIREALFEGHHTLAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLSPVFNIGGVWPPAGLDAISPWGLPFFNTILLISSGASVTWAHHAIVGGFKKEALIGLGVTLAFAVAFTAMQGFEYLNAPFAMSDGVYGSVFYMATGFHGFHVIIGTIFLSVCTLRLYYNHFSRQRHFGFEAA 245          
BLAST of mRNA_A-nodosum_M_contig98.48.1 vs. uniprot
Match: A0A3Q9Y3F9_SCYLO (Cytochrome c oxidase subunit 3 (Fragment) n=88 Tax=Ectocarpales TaxID=2877 RepID=A0A3Q9Y3F9_SCYLO)

HSP 1 Score: 431 bits (1109), Expect = 1.820e-151
Identity = 203/245 (82.86%), Postives = 223/245 (91.02%), Query Frame = 1
Query:    1 MKSQSKLIQRHPFHLVDPSPWPFVAALGGLSLTFGGVLYMHNYSGGGQLLILGIITILYVMFTWWRDIIREALFEGQHTIAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVIFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAA 735
            MK++ K++QRHPFHLVDPSPWP VAA GGLSLTFGGVL+MHNY GGG+LL LG++TILYVMFTWWRDIIREALFEGQHT+AVQQGLRMGMILFIVSEVMFFFAFFWAFFTSS++PVFNIGGVWPP+ I AISPWGLP +NTI+LLSSGASVTWAHHAI+AG KKEA+ GL +T +FAV FT +Q FEY  APFSMSD VYGSVF+MATGFHGFHVIIGTIFL ICT RLY DHFSRQ HFGFEAA
Sbjct:    1 MKAKIKMVQRHPFHLVDPSPWPLVAAFGGLSLTFGGVLFMHNYEGGGELLCLGVVTILYVMFTWWRDIIREALFEGQHTLAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSISPVFNIGGVWPPTHIVAISPWGLPFVNTILLLSSGASVTWAHHAIIAGFKKEAMLGLNITLMFAVAFTAMQAFEYAGAPFSMSDGVYGSVFYMATGFHGFHVIIGTIFLAICTIRLYFDHFSRQHHFGFEAA 245          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig98.48.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R4QQ89_9PHAE1.950e-19898.16Cytochrome c oxidase subunit 3 n=8 Tax=Fucales Tax... [more]
A0A0U1V199_SARFS1.980e-18288.60Cytochrome c oxidase subunit 3 n=199 Tax=Sargassac... [more]
Q2TUF2_9PHAE1.740e-17686.76Cytochrome c oxidase subunit 3 n=14 Tax=Phaeophyce... [more]
E6ZES3_ECTSI5.330e-17183.76Cytochrome c oxidase subunit 3 n=154 Tax=Phaeophyc... [more]
COX3_PYLLI2.170e-17083.33Cytochrome c oxidase subunit 3 n=161 Tax=Phaeophyc... [more]
A0A5K7TM11_9PHAE1.580e-15784.62Cytochrome c oxidase subunit 3 (Fragment) n=15 Tax... [more]
A0A4Y5T8S8_9PHAE9.660e-15779.40Cytochrome c oxidase subunit 3 n=57 Tax=Dictyotace... [more]
A0A0A7LG50_SACLA3.720e-15576.47Cytochrome c oxidase subunit 3 n=1 Tax=Saccharina ... [more]
A0A0U5B4J4_9PHAE3.160e-15283.67Cytochrome c oxidase subunit 3 (Fragment) n=2 Tax=... [more]
A0A3Q9Y3F9_SCYLO1.820e-15182.86Cytochrome c oxidase subunit 3 (Fragment) n=88 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig98contigA-nodosum_M_contig98:511460..512278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog70448.Q0P3F8
PFAMsCOX3
Model size819
Max annot lvl3041|Chlorophyta
KEGG koko:K02262
KEGG TC3.D.4.11,3.D.4.7,3.D.4.8
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00154
Hectar predicted targeting categorysignal anchor
Exons1
Evalue6.05e-131
EggNOG OGsCOG1845@1|root,KOG4664@2759|Eukaryota,37QER@33090|Viridiplantae,34MM4@3041|Chlorophyta
DescriptionSubunits I, II and III form the functional core of the enzyme complex
Cds size819
COG categoryC
BRITEko00000,ko00001,ko00002,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870511.2288659-CDS-A-nodosum_M_contig98:511459..5122781680870511.2288659-CDS-A-nodosum_M_contig98:511459..512278Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig98 511460..512278 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig98.48.1prot_A-nodosum_M_contig98.48.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig98 511460..512278 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig98.48.1

>prot_A-nodosum_M_contig98.48.1 ID=prot_A-nodosum_M_contig98.48.1|Name=mRNA_A-nodosum_M_contig98.48.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=273bp
MKSQSKLIQRHPFHLVDPSPWPFVAALGGLSLTFGGVLYMHNYSGGGQLL
ILGIITILYVMFTWWRDIIREALFEGQHTIAVQQGLRMGMILFIVSEVMF
FFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGAS
VTWAHHAIVAGSKKEALYGLAVTTIFAVIFTCLQGFEYISAPFSMSDSVY
GSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWH
FVDVVWLFLFLSIYWWGFNVII*
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mRNA from alignment at A-nodosum_M_contig98:511460..512278-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig98.48.1 ID=mRNA_A-nodosum_M_contig98.48.1|Name=mRNA_A-nodosum_M_contig98.48.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=819bp|location=Sequence derived from alignment at A-nodosum_M_contig98:511460..512278- (Ascophyllum nodosum dioecious)
ATGAAATCTCAATCTAAATTGATTCAACGACATCCGTTCCATTTGGTTGA CCCAAGCCCCTGGCCTTTTGTAGCAGCTTTAGGTGGTTTAAGTTTGACCT TTGGTGGAGTATTGTATATGCATAATTATAGTGGGGGTGGTCAATTATTA ATTCTAGGAATAATAACTATTTTATACGTCATGTTTACTTGGTGGAGAGA TATTATTCGTGAGGCTTTATTTGAGGGTCAGCACACTATTGCTGTTCAAC AGGGATTGCGTATGGGTATGATTCTTTTTATTGTCTCTGAAGTTATGTTT TTTTTCGCGTTTTTTTGGGCATTTTTTACTTCTTCTTTAGCTCCCGTATT TAACATAGGAGGTGTTTGGCCCCCTTCTGGCATTGAGGCAATAAGTCCCT GGGGGTTGCCGCTTTTAAACACTATTATTTTATTATCTTCTGGGGCTAGT GTTACGTGGGCTCATCATGCAATTGTAGCAGGTTCGAAAAAGGAGGCCTT GTATGGTTTAGCGGTTACCACAATATTTGCAGTTATTTTTACGTGTTTGC AGGGTTTTGAATATATAAGTGCTCCTTTTTCTATGTCTGATAGCGTTTAT GGTTCAGTGTTTTTCATGGCTACAGGTTTTCATGGTTTCCATGTAATTAT TGGTACTATATTTTTAGTAATATGTACTTTTCGTTTATATCTGGATCATT TTAGTCGCCAACGGCATTTTGGATTTGAAGCTGCTGCTTGGTATTGGCAT TTTGTTGATGTTGTTTGGTTATTTTTATTTTTAAGTATCTATTGGTGGGG CTTTAACGTTATAATTTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig98:511460..512278-

>mRNA_A-nodosum_M_contig98.48.1 ID=mRNA_A-nodosum_M_contig98.48.1|Name=mRNA_A-nodosum_M_contig98.48.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=819bp|location=Sequence derived from alignment at A-nodosum_M_contig98:511460..512278- (Ascophyllum nodosum dioecious)
ATGAAATCTCAATCTAAATTGATTCAACGACATCCGTTCCATTTGGTTGA
CCCAAGCCCCTGGCCTTTTGTAGCAGCTTTAGGTGGTTTAAGTTTGACCT
TTGGTGGAGTATTGTATATGCATAATTATAGTGGGGGTGGTCAATTATTA
ATTCTAGGAATAATAACTATTTTATACGTCATGTTTACTTGGTGGAGAGA
TATTATTCGTGAGGCTTTATTTGAGGGTCAGCACACTATTGCTGTTCAAC
AGGGATTGCGTATGGGTATGATTCTTTTTATTGTCTCTGAAGTTATGTTT
TTTTTCGCGTTTTTTTGGGCATTTTTTACTTCTTCTTTAGCTCCCGTATT
TAACATAGGAGGTGTTTGGCCCCCTTCTGGCATTGAGGCAATAAGTCCCT
GGGGGTTGCCGCTTTTAAACACTATTATTTTATTATCTTCTGGGGCTAGT
GTTACGTGGGCTCATCATGCAATTGTAGCAGGTTCGAAAAAGGAGGCCTT
GTATGGTTTAGCGGTTACCACAATATTTGCAGTTATTTTTACGTGTTTGC
AGGGTTTTGAATATATAAGTGCTCCTTTTTCTATGTCTGATAGCGTTTAT
GGTTCAGTGTTTTTCATGGCTACAGGTTTTCATGGTTTCCATGTAATTAT
TGGTACTATATTTTTAGTAATATGTACTTTTCGTTTATATCTGGATCATT
TTAGTCGCCAACGGCATTTTGGATTTGAAGCTGCTGCTTGGTATTGGCAT
TTTGTTGATGTTGTTTGGTTATTTTTATTTTTAAGTATCTATTGGTGGGG
CTTTAACGTTATAATTTAA
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