mRNA_A-nodosum_M_contig98.31.3 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig98.31.3
Unique NamemRNA_A-nodosum_M_contig98.31.3
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig98.31.3 vs. uniprot
Match: A0A6H5KJJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJJ2_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 8.990e-57
Identity = 94/149 (63.09%), Postives = 114/149 (76.51%), Query Frame = 2 
Query:   89 IWAEVIKKENAVICQPHRFFLNPNKSVFMSRKPTEVDPRVYETDSLSEGQRVAAGEAFAVKSAQEVGRMQQGGTEHCALNAASAKLWKTEAQRWGSFYGE-RAPGTDPFTSQRSCWWKPRSTCDVTEYGDRYYEMTGTSPYARKHPETA 532
            +WAEVIKKENA I  PHRFFLNPNK VF++RKPTEVDPR YE DSLS G + +      ++ A+E  +     ++   L+A+SAKLWKTE+QRWGSFY + R PG DPF+SQRSCW KPRS CDVTEYGDRY EMTG SPYA+K+ ++A
Sbjct:    1 MWAEVIKKENATIGVPHRFFLNPNKLVFIARKPTEVDPRTYEADSLSTGHQGSLESPSRIRLAEEGDK-----SDEATLDASSAKLWKTESQRWGSFYAKKRPPGVDPFSSQRSCWRKPRSKCDVTEYGDRYCEMTGVSPYAKKNLDSA 144
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BLAST of mRNA_A-nodosum_M_contig98.31.3 vs. uniprot
Match: D8LK45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK45_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.600e-24
Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = 2 
Query:   47 KDSTKIVDEVARQAIWAEVIKKENAVICQPHRFFLNPNKSVFMSRKPTEVDPRVYETDSLSEGQRV 244
            KD  K+VDEV+RQA+WAEVIKKENA I  PHRFFLNPNK VF++RKPTEVDPR YE DSLS G +V
Sbjct:    3 KDGAKVVDEVSRQAMWAEVIKKENATIGVPHRFFLNPNKLVFIARKPTEVDPRTYEADSLSTGHQV 68
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BLAST of mRNA_A-nodosum_M_contig98.31.3 vs. uniprot
Match: A0A485K8J6_9STRA (Aste57867_1113 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K8J6_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 8.240e-6
Identity = 49/161 (30.43%), Postives = 75/161 (46.58%), Query Frame = 2 
Query:   38 MATKDSTKI-VDEVARQAIWAEVIKKENAVICQPHRFFLNPNKSVFMSRKPTEVDPRVYETDSLSEGQRVAAGEAFAVKSAQEVGRMQQGGTEHCALNAASAKLWKTEAQRWGSFYGERAPGTDPFTSQRSCWWKPRSTCDVTEYGDRYYEMTGTSPYARK 517
            MA K +T +  DEVA+  IW E +KKE  +      F  NP     +S KPT + P  + +++      +++     VK  Q V + Q+            + +  TEAQ+ G  + E         S+R  W++ R + DVTE+ D Y  M G SP+A K
Sbjct:    1 MADKRATVVKCDEVAKNQIWREHLKKELLMEGPSTPFQFNPKTLSSVSPKPTMMKPSDFNSNNEDLPGSISSDVEQKVK--QNVKKPQE-----------ISDIPMTEAQKIGWAHEEAWKHGRTAVSKR--WYRGRGSTDVTEFADNYCTMAGCSPFADK 146
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BLAST of mRNA_A-nodosum_M_contig98.31.3 vs. uniprot
Match: W4FQK0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FQK0_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 7.100e-5
Identity = 49/165 (29.70%), Postives = 72/165 (43.64%), Query Frame = 2 
Query:   38 MATKDSTKIV---DEVARQAIWAEVIKKENAVICQPHRFFLNPNKSVFMSRKPTEVDPRVYE-TDSL-SEGQRVAAGEAFAVKSAQEVGRMQQGGTEHCALNAASAKLWKTEAQRWGSFYGERAPGTDPFTSQRSCWWKPRSTCDVTEYGDRYYEMTGTSPYARK 517
            MA K +  +V   DEV++  IW E +KKE  +      F  NP     ++ KPT + P  +  TD + S    VA      VK  QE+  +                   TEAQ+ G  + +         S+R  W++ R + DVTE+ + Y  M G SP+A K
Sbjct:    1 MADKKAAGVVVKCDEVSKNQIWREHLKKELLMEGPSTPFQFNPKTLSSVTPKPTMMKPSDFSRTDPVGSTSNEVAEKVKQNVKKPQEISAVPM-----------------TEAQKVGWAHDQAWKNGRGAVSKR--WYRGRGSTDVTEFAENYCTMAGCSPFADK 146
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig98.31.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KJJ2_9PHAE8.990e-5763.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK45_ECTSI1.600e-2475.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A485K8J6_9STRA8.240e-630.43Aste57867_1113 protein n=1 Tax=Aphanomyces stellat... [more]
W4FQK0_9STRA7.100e-529.70Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig98contigA-nodosum_M_contig98:245013..249715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4787.PITG_03162T0
PFAMsFAM183
Model size1272
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons4
Evalue5.4e-09
EggNOG OGs2CEUP@1|root,2S3H8@2759|Eukaryota,3QGKC@4776|Peronosporales
Ec32 ortholog descriptionFAM183 family
Ec32 orthologEc-06_008140.1
DescriptionFAM183A and FAM183B related
Cds size513
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig98.31.3prot_A-nodosum_M_contig98.31.3Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig98 245050..248993 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870509.6303403-UTR-A-nodosum_M_contig98:245012..2450491680870509.6303403-UTR-A-nodosum_M_contig98:245012..245049Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig98 245013..245049 +
1680870509.6932716-UTR-A-nodosum_M_contig98:248993..2497151680870509.6932716-UTR-A-nodosum_M_contig98:248993..249715Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig98 248994..249715 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870509.6434033-CDS-A-nodosum_M_contig98:245049..2450971680870509.6434033-CDS-A-nodosum_M_contig98:245049..245097Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig98 245050..245097 +
1680870509.6533477-CDS-A-nodosum_M_contig98:245437..2455901680870509.6533477-CDS-A-nodosum_M_contig98:245437..245590Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig98 245438..245590 +
1680870509.6662698-CDS-A-nodosum_M_contig98:246439..2466781680870509.6662698-CDS-A-nodosum_M_contig98:246439..246678Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig98 246440..246678 +
1680870509.678567-CDS-A-nodosum_M_contig98:248920..2489931680870509.678567-CDS-A-nodosum_M_contig98:248920..248993Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig98 248921..248993 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig98.31.3

>prot_A-nodosum_M_contig98.31.3 ID=prot_A-nodosum_M_contig98.31.3|Name=mRNA_A-nodosum_M_contig98.31.3|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=171bp
MATKDSTKIVDEVARQAIWAEVIKKENAVICQPHRFFLNPNKSVFMSRKP
TEVDPRVYETDSLSEGQRVAAGEAFAVKSAQEVGRMQQGGTEHCALNAAS
AKLWKTEAQRWGSFYGERAPGTDPFTSQRSCWWKPRSTCDVTEYGDRYYE
MTGTSPYARKHPETAKRGMK*
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mRNA from alignment at A-nodosum_M_contig98:245013..249715+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig98.31.3 ID=mRNA_A-nodosum_M_contig98.31.3|Name=mRNA_A-nodosum_M_contig98.31.3|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4703bp|location=Sequence derived from alignment at A-nodosum_M_contig98:245013..249715+ (Ascophyllum nodosum dioecious)
CTTAGTACATCGCATCCGAACTGGTCTCCTTGTTATCATGGCAACGAAAG
ACAGCACGAAGATTGTGGACGAGGTTGCCCGCCAGGTGAGAAGGAATGAC
CCATGGAGATTGGTGATGAGCAAGGAGCGTAAAAGGCAACCTACCCGCCG
TATGAAAGCATTCTAATTAATGCTTTACGATCGATCCCTCTTTCTTAACT
ATGAACACTTTAAAGAAGGGCTGCGCGGGTGCGAATGTCATATGAAAGCC
CGCCCGCTGTTGTAGACAGAGCCGTGTGCTCGCCTCCAACCAACCAGTGC
ATCATGATTCCACCGAGCATCTTGCTACCGACAGAAGGTCAACTGTCTTA
TACAGTGTACAAGTATACAACTTTATAGAACTACTACGTGCTGTAAAATA
AGGGGTGCAGGCGTTACTCCCGCAGGCAATATGGGCGGAGGTGATCAAGA
AAGAGAATGCAGTGATATGTCAACCTCACAGATTCTTCCTCAACCCGAAC
AAGTCGGTCTTCATGTCTAGGAAACCTACAGAGGTCGATCCGCGGGTATA
CGAAACGGATTCTCTGTCAGAAGGACAGGTGGGCTAAAATGAAGGATTGA
ATACCCAAGTCGTTGTCACTCACCAACAGACAGTTGTACCGTGTACACCA
TGCATGCTGCATGTTCCATTTTTTTTATAAGGGACAAAGCTTCAGTTCGC
TAAAATTGAAGGGAAAAAGGAAAAGTATGGCTGTTACTTTTACGTAGTGG
AAAAAAAGCGCAACACTTGTACTATTACTAGTACCCGGTAGCTATTATAA
ATACATTAATACTGTGCAGTATATATTAATATCTGTTCAAGTATGGTGAA
AAACAATACCACTTTTTTGTCGCTATTAAAAGCCACCTGCCTGTATGGCG
AAAAACAAGAGACCACGCGAGTGAGTGCGCGCGTGCGACACGTATGTTTA
CTCAGCTAAAATAGGTTCTAGAACGAATAGCTCTACAGTGGTACCAGCAT
TGTTAACAATTAACATAACTAGTGACCAAGAACCGAAACGAACCGGACCT
CCAGAAAAGGGCCGAAGATGGGGATCATCGAGTCACAAGATGTAGTCTCC
CTTAACATACTTGAGATTGCTTGCTGCCCAGATCGCCTAACATAACACGA
GTCTCTCGCTAGATACAAGGTACGCAGAGCCAATTGGATCGATCTATACA
GAACTGGCCTGTCCTGTCGTAGAATATAAGCTCTTTTGTTATTTCTTTGG
GCCCCGACTATTTCATTCACCGACCCCGCTGGCAGACCGTAATCGCCCAT
TCTAGTCGACAAGCCCGTTGCTAGTCTTGGCGAGGCACCCAAATCTCATC
ATTTCCACCGCTTTGAAAGATGGATTTTTAAAAGGGTCCAACGCGTCCGT
TCCGTTGGGTGGTGCCACGGTCAAAAGCGTGTGGCCGCGGGGGAAGCATT
TGCCGTTAAATCAGCGCAGGAGGTTGGCAGGATGCAGCAGGGTGGTACGG
AACATTGCGCCTTAAACGCGGCGAGCGCTAAGCTTTGGAAGACGGAAGCA
CAGCGATGGGGGAGCTTCTACGGGGAGAGAGCACCGGGAACTGATCCTTT
TACCTCCCAGCGCAGTTGCTGGTGGAAACCGCGGTCCACATGCGACGTAA
CGGAGTACGGCGACAGGTAGGCCGGGTGATGCGGCCACCTTTTTTTCGTT
CTTGGGTCTCTCTTTGCCAATCGATGCTAAAAATAGTACCTTCTGGCCGC
CTATATGTCTTTTGGTAACAAATCGCGCTACTACTATCGGTTATCTGGAA
TAACGGTACACATAATCAATCCAAACTCTCCAAAAGGTGCAAAACGGATT
TTTGAACCCTAAGCTGCAGGGCGATGGAGGCGTTTACACGGGGCAAAAAC
TGAGGTTTTGTAAAGTCCAAGGGAATCGATACCGTGCCTGAGGACAGGGT
AATATTAATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCAACCTTA
CCCGGTTGATCTATACTCTGATATATGTGATGGCCATACATACATACATA
CATACTACTGTACTGCTTGTGTTTGTAAACATATACCTGGTACTACAGTA
TATGCCGTCTTATAGCCTATAGGCCGTGGTGGAGGGAGCGAGGGTCGACA
GACCTCCCCTTCTGCACTTAGAAACAATGTACCTGATAAAAACAACAAGG
TTGGCATGATTCGTACCGAATATTTATTTGAGGATCACTTCGGTGTAGCA
ATGAGGTGCCCCCTCCCGTGCCGCGGTGCCCCCCGTCAAAGCTGCGGCGT
CTACCGTCAATAACATTATGCTATTTTACAGTGTGTGACAGTAGTAACTG
TGTACTGGTACATGATATGGTATTTCTTCGTAAAATTCATACATGACAGA
TATAGAGCTCTACCCCCGGTGCTATGCTATGTTTTGATAAAACAAAAAAT
GGTCGCGATTTTTTAAAAACTTTCTGTGAGTCCCGCTTCCCGCTTGCTTT
ATCTTGGGGTTTCCATGGGAAGACAACACATTCCCCAAGACAGACCAGGG
AGCAGTACAATGGTGTCCCCTGCGTTTGGGTTTCTAGTTTGCCACCCAAG
AGATAGAGGTGAAGAGCTAAGAAGTTCTCGACTGTAATCCTAATTCTCGA
GGTGTCCATGTGATCCCAATGCCGCGGCGTCTCAGACTGCGACGCCTCCT
CCTTTTTTTTGCGAAATAATTCCTACCCCTTTCCCTGGGTTTCCACATTG
CAATTGATCAGGGTGCTCACCATTCACGAGGAAAACAATACACCATACAT
GTTGTTGGGGAATGCAGCAGTACTTAGCTCTTGATGCAAACGCCAGGGAT
GGCCCAAAAATGAGAACTTTTCCACATTTACCCAGGGCTATTCTCTGATC
GACGACAGGACCCTGGAAACCGCTGATGATATGGATTTTTCGGCCTCAAA
GATTTATGCCCGGGGTTACCACTTCTCAAACCTATATCCCTCATCTTTGA
GTTTCGACCTCTTTCATGTTGAAGTGAAATTTTCACCCCCACACAAGAAT
GAAAAATAAGTACCACTGATGAACATAAATCCAATATGTACCAGGTATAG
TAGTATAATACCCTACAAACACGAAACATTATCTGGTACCATTAATATAT
ACATTTACGACGTGCTCGTCCATTTCTTCACATGAAGTCTATTTTGACGG
AATTAATTTTGGCGAGGGGGGAGGAGGGGGGCGTCACAGTACCGAGGGGA
GAGGGGCGGCGCAATGTAGAGAAGGCACGCCGCAACGGGTGGAGTCGTTC
AACGATTGGGGGGGGGGCGGGGGTACGTCGATTCCGTCCCCGGGCTGGTC
ACCAAAACAGTCCCTTCCGGGGATAGGACTGCATGGTCCTCAACATGGTC
GGCAAGCTTGCCCCGAATTCAACATAATTCACCAGGGGGTTGGTCAAATA
CATCCCCGGGAGGGGCTTTTTTCGCGCCGTCCTCTCCCAAAACAGGGACA
AATTTGCTACACCGCAAGGGCCAAGGGGGGATGCCACATGCCACAAGCGG
ATGGGTCACCACAATACCACCGTACACAAGGCAGCGTACGGCGGCGGGGG
GGATACGCACATACTTTCATTTGGCAGGAAAACATGATAACAGAGCATTG
GAGCGTGTACTCAACGCAATTTTTTGGAGTATTCAGGATGAGTCGTACGA
CTCGGGAGGCTAACGTTAGGAATATACTGATTGGTACAAGGATTTTTTGT
TCATGTGTCCGGAACTCTGTTTCTCTAGCCCATTACTCTGGAAAGTACCA
CGGTGGTCTTGTAAGCTCCACACCACCACATCATCACACCATCCCACCAC
CATTACTCGGTCAATCAAGAGGTGGCCCACCCACCCAGTTTGTCCTCTTG
GTGCACAGGTATTACGAGATGACAGGCACCAGCCCTTACGCTAGGAAACA
CCCGGAAACGGCGAAAAGAGGCATGAAATAGAAAGAGGTGGTCACCCACA
AATACGATCGACTTCATTCAGGACAAAACATCCACACGGAGGAGCACCGA
AATCAACATTTGTTTACTAAATCAGCCGTGGCTGCCACCAAAAGATGTTT
TGCCGCGTTTTCTGCCATGCCGAGCAATCTCCAAACAAGTTCGATGATTG
TCATGAACGTTGACAAAATCCGATACATGTTCTCTTCAAGGATCTTTCTT
GGGGGTGTTCAGAGCGAAATGGGCGATGAATCCTTGGCGAGAAGTTTCTC
AATCGCAAGGTGTCTCAAATGCGAGGTTTTGATAATGAGCGCGCGTGTGA
ATCTTAAGCGGGTTTGATTACCACTTTGCCAGGTATTGCGTATTTGATGT
ATTATCTCTTTTGTCTATCGATATATAGTGATGAGTTATTCTTCGGCGTG
GCATATCATTCTTCGCGGCCCAGAAACTTTGTCTTAGTGCTACGTCTTCA
TACTGTTGCAGTAGTTTTTCGTCAGTATTAACGCTATCCAATGGAAGGTT
GTATGTATGTAACAGCCCGGGGTCACTGGTGATTTTCGGATCTGTCCTAC
GGGGAAGGTACACAACTTAATAAGTAGTATGCAATGGGGGTCGCGTCATA
ATCGAGGTGGTTTTGCATGACGTGATATGTTGGTAACAATCTCAGCAGAC
TAGGCCTCAACCCGGTACGGTTGCCATTCCTGCTTGTTGTCAGCTGAACA
ACG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig98:245013..249715+

>mRNA_A-nodosum_M_contig98.31.3 ID=mRNA_A-nodosum_M_contig98.31.3|Name=mRNA_A-nodosum_M_contig98.31.3|organism=Ascophyllum nodosum dioecious|type=CDS|length=513bp|location=Sequence derived from alignment at A-nodosum_M_contig98:245013..249715+ (Ascophyllum nodosum dioecious)
ATGGCAACGAAAGACAGCACGAAGATTGTGGACGAGGTTGCCCGCCAGGC
AATATGGGCGGAGGTGATCAAGAAAGAGAATGCAGTGATATGTCAACCTC
ACAGATTCTTCCTCAACCCGAACAAGTCGGTCTTCATGTCTAGGAAACCT
ACAGAGGTCGATCCGCGGGTATACGAAACGGATTCTCTGTCAGAAGGACA
GCGTGTGGCCGCGGGGGAAGCATTTGCCGTTAAATCAGCGCAGGAGGTTG
GCAGGATGCAGCAGGGTGGTACGGAACATTGCGCCTTAAACGCGGCGAGC
GCTAAGCTTTGGAAGACGGAAGCACAGCGATGGGGGAGCTTCTACGGGGA
GAGAGCACCGGGAACTGATCCTTTTACCTCCCAGCGCAGTTGCTGGTGGA
AACCGCGGTCCACATGCGACGTAACGGAGTACGGCGACAGGTATTACGAG
ATGACAGGCACCAGCCCTTACGCTAGGAAACACCCGGAAACGGCGAAAAG
AGGCATGAAATAG
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