mRNA_A-nodosum_M_contig98.28.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig98.28.1 vs. uniprot
Match: A0A6H5K4H5_9PHAE (CCHC-type domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H5_9PHAE) HSP 1 Score: 122 bits (307), Expect = 4.970e-28 Identity = 92/260 (35.38%), Postives = 136/260 (52.31%), Query Frame = 1
Query: 4 QAFVAKE-TGKYRVMVEEEVRGGELGKQVVQYIVDSATTCNMTPDADGLINYRECSRPLGLV-NRRTTSIAGYGDLTVAFRSDKGWVHVKLHDVAYAPLLSYTLISLPYLALK-RHTYAGDKDGVTLKLKGGKTVHCALIRRLCRQYGYHQEAKGRVVDTACAVTAPGQAKAPTTPTDIDTFHCTYDHTHEVLLNKRRSNKELTSAANSKNA-GCI*WQRGYGSPLPGRPTPEQVPSAPHAPP**LPPIAEE-EESTAGE 768
+A V ++ TG++ +V+ RGG + +++ D+ T +M P A+ NY EC R L + ++ +I GYGD+ V S G + L VA+ P L+Y L+SL L + + A D+ + + + GG++V+ L L Q G H+ GR + ACA+ APG AKA TP DI+ FHC + H+HEVLL + +T + GC +G P+P R T + P LPPIAEE EE T GE
Sbjct: 452 EALVVRDFTGEWNRVVD---RGGVEQARQERFVADTGATNHMFPSANAFENYHECDRRLSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSLTALLKQTKGRLAADERELEVFVGGGESVYFPLWGDLFVQTG-HRIDSGR--ELACAIIAPGNAKANRTPVDINDFHCAHGHSHEVLLKNTAKQQGVTLVGQLRECMGCS-TAKGLSKPIPNR-TSTRAP---------LPPIAEEDEELTTGE 694
BLAST of mRNA_A-nodosum_M_contig98.28.1 vs. uniprot
Match: A0A6H5L715_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L715_9PHAE) HSP 1 Score: 122 bits (307), Expect = 5.190e-28 Identity = 92/260 (35.38%), Postives = 136/260 (52.31%), Query Frame = 1
Query: 4 QAFVAKE-TGKYRVMVEEEVRGGELGKQVVQYIVDSATTCNMTPDADGLINYRECSRPLGLV-NRRTTSIAGYGDLTVAFRSDKGWVHVKLHDVAYAPLLSYTLISLPYLALK-RHTYAGDKDGVTLKLKGGKTVHCALIRRLCRQYGYHQEAKGRVVDTACAVTAPGQAKAPTTPTDIDTFHCTYDHTHEVLLNKRRSNKELTSAANSKNA-GCI*WQRGYGSPLPGRPTPEQVPSAPHAPP**LPPIAEE-EESTAGE 768
+A V ++ TG++ +V+ RGG + +++ D+ T +M P A+ NY EC R L + ++ +I GYGD+ V S G + L VA+ P L+Y L+SL L + + A D+ + + + GG++V+ L L Q G H+ GR + ACA+ APG AKA TP DI+ FHC + H+HEVLL + +T + GC +G P+P R T + P LPPIAEE EE T GE
Sbjct: 832 EALVVRDFTGEWNRVVD---RGGVEQARQERFVADTGATNHMFPSANAFENYHECDRRLSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSLTALLKQTKGRLAADERELEVFVGGGESVYFPLWGDLFVQTG-HRIDSGR--ELACAIIAPGNAKANRTPVDINDFHCAHGHSHEVLLKNTAKQQGVTLVGQLRECMGCS-TAKGLSKPIPNR-TSTRAP---------LPPIAEEDEELTTGE 1074
BLAST of mRNA_A-nodosum_M_contig98.28.1 vs. uniprot
Match: A0A6H5JNN1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN1_9PHAE) HSP 1 Score: 122 bits (307), Expect = 5.320e-28 Identity = 92/260 (35.38%), Postives = 136/260 (52.31%), Query Frame = 1
Query: 4 QAFVAKE-TGKYRVMVEEEVRGGELGKQVVQYIVDSATTCNMTPDADGLINYRECSRPLGLV-NRRTTSIAGYGDLTVAFRSDKGWVHVKLHDVAYAPLLSYTLISLPYLALK-RHTYAGDKDGVTLKLKGGKTVHCALIRRLCRQYGYHQEAKGRVVDTACAVTAPGQAKAPTTPTDIDTFHCTYDHTHEVLLNKRRSNKELTSAANSKNA-GCI*WQRGYGSPLPGRPTPEQVPSAPHAPP**LPPIAEE-EESTAGE 768
+A V ++ TG++ +V+ RGG + +++ D+ T +M P A+ NY EC R L + ++ +I GYGD+ V S G + L VA+ P L+Y L+SL L + + A D+ + + + GG++V+ L L Q G H+ GR + ACA+ APG AKA TP DI+ FHC + H+HEVLL + +T + GC +G P+P R T + P LPPIAEE EE T GE
Sbjct: 930 EALVVRDFTGEWNRVVD---RGGVEQARQERFVADTGATNHMFPSANAFENYHECDRRLSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSLTALLKQTKGRLAADERELEVFVGGGESVYFPLWGDLFVQTG-HRINSGR--ELACAIIAPGNAKANRTPVDINDFHCAHGHSHEVLLKNTAKQQGVTLVGQLRECMGCS-TAKGLSKPIPNR-TSTRAP---------LPPIAEEDEELTTGE 1172
BLAST of mRNA_A-nodosum_M_contig98.28.1 vs. uniprot
Match: A0A6H5KPC5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC5_9PHAE) HSP 1 Score: 120 bits (300), Expect = 2.030e-27 Identity = 89/252 (35.32%), Postives = 130/252 (51.59%), Query Frame = 1
Query: 25 TGKYRVMVEEEVRGGELGKQVVQYIVDSATTCNMTPDADGLINYRECSRPLGLV-NRRTTSIAGYGDLTVAFRSDKGWVHVKLHDVAYAPLLSYTLISLPYLALK-RHTYAGDKDGVTLKLKGGKTVHCALIRRLCRQYGYHQEAKGRVVDTACAVTAPGQAKAPTTPTDIDTFHCTYDHTHEVLLNKRRSNKELTSAANSKNA-GCI*WQRGYGSPLPGRPTPEQVPSAPHAPP**LPPIAEE-EESTAGE 768
TG++ +V RGG + +++ D+ T +M P A+ NY EC R L + ++ +I GYGD+ V S G + L VA+ P L+Y L+SL L + + A D+ + + + GG++V+ L L Q H++ GR + ACA+ APG AKA TP DI+ FHC + H+HEVLL + +T + GC +G P+P R T + P LPPIAEE EE T GE
Sbjct: 262 TGEWNRVV---ARGGVEQARQERFVADTGATNHMFPSANAFENYHECDRRLSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSLTALLKQTKGRLAADERELEVFVGGGESVYFPLWGDLFVQTS-HRKDSGR--ELACAMIAPGNAKANRTPVDINDFHCAHGHSHEVLLKNTAKQQGVTLVGQLRECMGCS-TAKGLSKPIPNR-TSTRAP---------LPPIAEEDEELTTGE 496
BLAST of mRNA_A-nodosum_M_contig98.28.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 115 bits (288), Expect = 1.740e-25 Identity = 71/208 (34.13%), Postives = 101/208 (48.56%), Query Frame = 1
Query: 61 RGGELGKQVVQYIVDSATTCNMTPDADGLINYRECSRPLGLVNRRTTSIAGYGDLTVAFRSDKGWVHVKLHDVAYAPLLSYTLISLPYLALKR-HTYAGDKDGVTLKLKGGKTVHCALIRRLCRQYGYHQEAKGRVVDTACAVTAPGQAKAPTTPTDIDTFHCTYDHTHEVLLNKRRSNKELTSAANSKNA-GCI*WQRGYGSPLPGR 678
RGG + +Y+ D+ T +M ++DG + Y EC R + + T I GYGD+TV S G + L VA+ P L Y L+SL L T +K + L+ GG+ V+ L Q G+ + ACA APG AKAP+TP DI+ FHC + H+HEVLL + T + GC +G P+P +
Sbjct: 358 RGGVEQARRGRYVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKHELELERGGGEVVYFPRCGNLYVQNGFRTHT-----EHACAAIAPGNAKAPSTPVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCS-TAKGLSKPIPNK 559
BLAST of mRNA_A-nodosum_M_contig98.28.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 115 bits (288), Expect = 1.750e-25 Identity = 71/208 (34.13%), Postives = 101/208 (48.56%), Query Frame = 1
Query: 61 RGGELGKQVVQYIVDSATTCNMTPDADGLINYRECSRPLGLVNRRTTSIAGYGDLTVAFRSDKGWVHVKLHDVAYAPLLSYTLISLPYLALKR-HTYAGDKDGVTLKLKGGKTVHCALIRRLCRQYGYHQEAKGRVVDTACAVTAPGQAKAPTTPTDIDTFHCTYDHTHEVLLNKRRSNKELTSAANSKNA-GCI*WQRGYGSPLPGR 678
RGG + +Y+ D+ T +M ++DG + Y EC R + + T I GYGD+TV S G + L VA+ P L Y L+SL L T +K + L+ GG+ V+ L Q G+ + ACA APG AKAP+TP DI+ FHC + H+HEVLL + T + GC +G P+P +
Sbjct: 371 RGGVEQARRGRYVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKHELELERGGGEVVYFPRCGNLYVQNGFRTHT-----EHACAAIAPGNAKAPSTPVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCS-TAKGLSKPIPNK 572
BLAST of mRNA_A-nodosum_M_contig98.28.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 115 bits (288), Expect = 1.770e-25 Identity = 71/208 (34.13%), Postives = 101/208 (48.56%), Query Frame = 1
Query: 61 RGGELGKQVVQYIVDSATTCNMTPDADGLINYRECSRPLGLVNRRTTSIAGYGDLTVAFRSDKGWVHVKLHDVAYAPLLSYTLISLPYLALKR-HTYAGDKDGVTLKLKGGKTVHCALIRRLCRQYGYHQEAKGRVVDTACAVTAPGQAKAPTTPTDIDTFHCTYDHTHEVLLNKRRSNKELTSAANSKNA-GCI*WQRGYGSPLPGR 678
RGG + +Y+ D+ T +M ++DG + Y EC R + + T I GYGD+TV S G + L VA+ P L Y L+SL L T +K + L+ GG+ V+ L Q G+ + ACA APG AKAP+TP DI+ FHC + H+HEVLL + T + GC +G P+P +
Sbjct: 514 RGGVEQARRGRYVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKHELELERGGGEVVYFPRCGNLYVQNGFRTHT-----EHACAAIAPGNAKAPSTPVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCS-TAKGLSKPIPNK 715
BLAST of mRNA_A-nodosum_M_contig98.28.1 vs. uniprot
Match: A0A6H5KFZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFZ8_9PHAE) HSP 1 Score: 108 bits (271), Expect = 1.760e-23 Identity = 72/204 (35.29%), Postives = 111/204 (54.41%), Query Frame = 1
Query: 4 QAFVAKE-TGKYRVMVEEEVRGGELGKQVVQYIVDSATTCNMTPDADGLINYRECSRPLGLV-NRRTTSIAGYGDLTVAFRSDKGWVHVKLHDVAYAPLLSYTLISLPYLALK-RHTYAGDKDGVTLKLKGGKTVHCALIRRLCRQYGYHQEAKGRVVDTACAVTAPGQAKAPTTPTDIDTFHCTYDHTHEVLLNKRRSNKELT 606
+A V ++ TG++ +V+ RGG + +++ D+ T +M P A+ NY EC R L + ++ +I GYGD+ V S G + L VA+ P L Y L+SL L + + A D+ + + + GG++V+ L L Q G H+ GR + ACA+ APG AKA TP DI+ FHC + H+HEVLL + +T
Sbjct: 295 EALVVRDFTGEWNRVVD---RGGVEQARQERFVADTGATNHMFPSANAFENYHECDRRLSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELIYNLVSLTALLKQTKGRLAADERELEVFVGGGESVYFPLWGDLFVQTG-HRIDSGR--ELACAIIAPGNAKANRTPVDINDFHCAHGHSHEVLLKNTAKQQGVT 492
BLAST of mRNA_A-nodosum_M_contig98.28.1 vs. uniprot
Match: A0A6H5L142_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L142_9PHAE) HSP 1 Score: 107 bits (267), Expect = 5.590e-23 Identity = 67/207 (32.37%), Postives = 97/207 (46.86%), Query Frame = 1
Query: 61 RGGELGKQVVQYIVDSATTCNMTPDADGLINYRECSRPLGLVNRRTTSIAGYGDLTVAFRSDKGWVHVKLHDVAYAPLLSYTLISLPYLALKR-HTYAGDKDGVTLKLKGGKTVHCALIRRLCRQYGYHQEAKGRVVDTACAVTAPGQAKAPTTPTDIDTFHCTYDHTHEVLLNKRRSNKELTSAANSKNAGCI*WQRGYGSPLPGR 678
RGG + +Y+ D+ T +M ++DG + Y EC R + + T I GYGD+TV S G + L VA+ P L Y L+SL L T +K + L+ GG+ V+ L Q G+ + A A APG AKAP+TP DI+ FHC + H+HEVLL + T + + P+P +
Sbjct: 223 RGGVEQARRGRYVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKHELELERGGGEVVYFPRCGNLYVQNGFRTHT-----ERARAAIAPGNAKAPSTPVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLRCSAAKWLSKPIPNK 424
BLAST of mRNA_A-nodosum_M_contig98.28.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE) HSP 1 Score: 108 bits (269), Expect = 5.880e-23 Identity = 88/260 (33.85%), Postives = 132/260 (50.77%), Query Frame = 1
Query: 4 QAFVAKE-TGKYRVMVEEEVRGGELGKQVVQYIVDSATTCNMTPDADGLINYRECSRPLGLV-NRRTTSIAGYGDLTVAFRSDKGWVHVKLHDVAYAPLLSYTLISLPYLALK-RHTYAGDKDGVTLKLKGGKTVHCALIRRLCRQYGYHQEAKGRVVDTACAVTAPGQAKAPTTPTDIDTFHCTYDHTHEVLLNKRRSNKELTSAANSKNA-GCI*WQRGYGSPLPGRPTPEQVPSAPHAPP**LPPIAEE-EESTAGE 768
+A V ++ TG++ +V+ RGG + +++ D+ T +M P A+ NY EC R L + ++ +I G S G + + L VA+ P L+Y L+SL L + + A D+ + + + GG++V+ L L Q G H+ GR + ACA+ APG AKA TP DI+ FHC + H+HEVLL + +T + GC +G P+P R T + P LPPIAEE EE T GE
Sbjct: 851 EALVVRDFTGEWNRVVD---RGGVEQARQERFVADTGATNHMFPSANAFENYNECDRRLSVAAGKQAFAIVG---------SRVGTIDLLLKRVAHVPELNYNLVSLTALLKQTKGRLAADERELEVFVGGGESVYFPLWGDLFVQTG-HRIDSGR--ELACAIIAPGNAKANRTPVDINDFHCAHGHSHEVLLKNTAKQQGVTLVGQLRECMGCS-TAKGLSKPIPNR-TSTRAP---------LPPIAEEDEELTTGE 1084 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig98.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig98.28.1 >prot_A-nodosum_M_contig98.28.1 ID=prot_A-nodosum_M_contig98.28.1|Name=mRNA_A-nodosum_M_contig98.28.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=200bp MVEEEVRGGELGKQVVQYIVDSATTCNMTPDADGLINYRECSRPLGLVNRback to top mRNA from alignment at A-nodosum_M_contig98:232880..233650- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig98.28.1 ID=mRNA_A-nodosum_M_contig98.28.1|Name=mRNA_A-nodosum_M_contig98.28.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=771bp|location=Sequence derived from alignment at A-nodosum_M_contig98:232880..233650- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig98:232880..233650- >mRNA_A-nodosum_M_contig98.28.1 ID=mRNA_A-nodosum_M_contig98.28.1|Name=mRNA_A-nodosum_M_contig98.28.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at A-nodosum_M_contig98:232880..233650- (Ascophyllum nodosum dioecious)back to top |