mRNA_A-nodosum_M_contig98.13.2 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig98.13.2 vs. uniprot
Match: A0A6H5JCU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU9_9PHAE) HSP 1 Score: 344 bits (883), Expect = 8.070e-113 Identity = 175/254 (68.90%), Postives = 203/254 (79.92%), Query Frame = 2
Query: 233 AISAEQDAVAQHPPMPSTVKGILFDMDGTLTDSDSLHFEAYRETFLKVTPDFNGGTPITNDYYDEWMSGNSNAAIVEKLFPDKLKEEQTALWKSKEELYRNISTKMTPLPGLLAFLDRCRRAGLAMIIVTNAPRLDAEHTMQVLDLYNRQDVSEIGQGVSFGKTMVIGCECARAKPHPDPYLEGLSRLGLKAEDCVAFEDSVNGATSAVSAGLYTIGVGEGAGEKLRGV-GVEMAVANFLDSRLSCTLGLGGSE 991
A+SAE A Q P +P+TVKGILFDMDGTLTDSD+LHFEAYRETFLKVTP FNGG I+ +YYD+WMSGNSN AIVEKLFP+ L E+QTALWK+KEE+YR IST MTPLPGLL FLD C+ GLAMI+VTNAPRLDA HT+ +L L +R F +TMVIG ECARAKPHPDPYLEGLSRLGL A+ CVAFEDSVNG +SAVSAGLYT GVGEG+ E+L+GV G + V+++LDSRL LG+ +
Sbjct: 81 AVSAESGATNQFPSLPATVKGILFDMDGTLTDSDTLHFEAYRETFLKVTPSFNGGERISREYYDDWMSGNSNPAIVEKLFPEMLAEDQTALWKAKEEVYRKISTTMTPLPGLLKFLDCCQSEGLAMILVTNAPRLDAVHTLNILGLSDR-----------FEETMVIGYECARAKPHPDPYLEGLSRLGLPADACVAFEDSVNGVSSAVSAGLYTFGVGEGSQERLKGVIGGGICVSDYLDSRLYAALGVAPRD 323
BLAST of mRNA_A-nodosum_M_contig98.13.2 vs. uniprot
Match: D8LK30_ECTSI (Haloacid dehalogenase-like hydrolase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK30_ECTSI) HSP 1 Score: 304 bits (779), Expect = 1.110e-98 Identity = 155/229 (67.69%), Postives = 181/229 (79.04%), Query Frame = 2
Query: 308 MDGTLTDSDSLHFEAYRETFLKVTPDFNGGTPITNDYYDEWMSGNSNAAIVEKLFPDKLKEEQTALWKSKEELYRNISTKMTPLPGLLAFLDRCRRAGLAMIIVTNAPRLDAEHTMQVLDLYNRQDVSEIGQGVSFGKTMVIGCECARAKPHPDPYLEGLSRLGLKAEDCVAFEDSVNGATSAVSAGLYTIGVGEGAGEKLRGV-GVEMAVANFLDSRLSCTLGLGGSE 991
MDGTLTDSD+LHFEAYRETFLK+TP FNGG I+ +YYD+WMSGNSN AIVEKLFP+ L E+QTALWK+KEE+YR IST MT LPGLL FLD C+ GLAMI+VTNAPRLDA HT+ +L L +R F +TMVIG EC RAKPHPDPYLEGLSRL L A+ CVAFEDSVNG +SAVSAGLYT GVGEG+ E+L+GV G + V+++LDSRL LG+ +
Sbjct: 1 MDGTLTDSDTLHFEAYRETFLKLTPSFNGGERISREYYDDWMSGNSNPAIVEKLFPEMLAEDQTALWKAKEEVYRKISTTMTLLPGLLEFLDGCQSEGLAMILVTNAPRLDAVHTLNILGLSDR-----------FEETMVIGYECPRAKPHPDPYLEGLSRLDLPADACVAFEDSVNGVSSAVSAGLYTFGVGEGSQERLKGVIGGGICVSDYLDSRLHAALGVAPRD 218
BLAST of mRNA_A-nodosum_M_contig98.13.2 vs. uniprot
Match: A0A835ZE39_9STRA (HAD-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE39_9STRA) HSP 1 Score: 272 bits (695), Expect = 6.600e-85 Identity = 144/258 (55.81%), Postives = 170/258 (65.89%), Query Frame = 2
Query: 224 RIHAISAEQDAV-AQHPPMPSTVKGILFDMDGTLTDSDSLHFEAYRETFLKVTPDFNGGTPITNDYYDEWMSGNSNAAIVEKLFPDKLKEEQTALWKSKEELYRNISTKMTPLPGLLAFLDRCR-----RAGLAMIIVTNAPRLDAEHTMQVLDLYNRQDVSEIGQGVSFGKTMVIGCECARAKPHPDPYLEGLSRLGLKAEDCVAFEDSVNGATSAVSAGLYTIGVGEGAGEK-LRGVGVEMAVANFLDSRLSCTLG 976
R+HA A A A P P+ +KG LFDMDGTL DSD LHFEAYR+ L++ PD NGG PI +Y EWMSGNSNA I +LFPD +Q +W KE LYR IST M PLPGL L+ C +A +A IIVTNAPRLDA HTM+VL ++ R FG T+VIG ECARAKPHP+PYLEGL RLGL A DC+AFEDS+NG SA +AGL+T+GV G E LRG G + +A+F D RL LG
Sbjct: 43 RLHATDAAATATEAPAQPSPAHIKGCLFDMDGTLVDSDELHFEAYRDIILEMRPDHNGGKPIDKAWYKEWMSGNSNAVITARLFPDMPLAQQEEMWDRKEALYRRISTAMAPLPGLARLLEWCDLEDDDKARIATIIVTNAPRLDARHTMEVLGIHER-----------FGNTVVIGAECARAKPHPEPYLEGLRRLGLAARDCIAFEDSLNGCRSATAAGLFTVGVTTGLDEAALRGAGAGVCIADFTDERLWALLG 289
BLAST of mRNA_A-nodosum_M_contig98.13.2 vs. uniprot
Match: A0A6U0VYW9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0VYW9_9STRA) HSP 1 Score: 192 bits (488), Expect = 4.020e-53 Identity = 110/228 (48.25%), Postives = 139/228 (60.96%), Query Frame = 2
Query: 287 VKGILFDMDGTLTDSDSLHFEAYRETFLKVTPDFNGGTPITNDYYDEWMSGNSNAAIVEKLFPDKLKEEQTALWKSKEELYRNI-STKMTPLPGLLAFLDRCRRAGLAMIIVTNAPRLDAEHTMQVLDLYNRQDVSEIGQGVSFGKTMVIGCECARAKPHPDPYLEGLSRLGLKAEDCVAFEDSVNGATSAVSAGLYTIGVGEGAGEK--LRGVGVEMAVANFLDSRL 961
++GILFDMDGTLTDSDS+HFEAY+ T ++ P+ IT ++YD+ MSG SN IV K+ PD E+Q +W KEE YR + S M GL AFL C L I+VTNAPR DA HT+ +L L+ R F K +VIG EC AKP P+PYLEGL +LGL A C+AFEDS +GA SA++A L T+ V E+ + G M V F D+RL
Sbjct: 160 LRGILFDMDGTLTDSDSVHFEAYKATLARLAPEL---PEITREFYDKEMSGQSNEIIVPKVLPDLSPEQQRQVWVQKEEEYRRLTSDSMQRFEGLDAFLQWCDSNSLKTIVVTNAPREDAMHTLTMLGLFGR-----------FAKHVVIGMECKEAKPSPEPYLEGLRKLGLSASQCIAFEDSPSGAKSAIAAQLRTVAVLSSRSEEEMVATHGCVMGVRRFDDARL 373
BLAST of mRNA_A-nodosum_M_contig98.13.2 vs. uniprot
Match: W7TRE2_9STRA (Had family hydrolase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRE2_9STRA) HSP 1 Score: 189 bits (479), Expect = 8.320e-53 Identity = 95/200 (47.50%), Postives = 129/200 (64.50%), Query Frame = 2
Query: 287 VKGILFDMDGTLTDSDSLHFEAYRETFLKVTPDFNGGTPITNDYYDEWMSGNSNAAIVEKLFPDKLKEEQTALWKSKEELYRNISTKMTPLPGLLAFLDRCRRAGLAMIIVTNAPRLDAEHTMQVLDLYNRQDVSEIGQGVSFGKTMVIGCECARAKPHPDPYLEGLSRLGLKAEDCVAFEDSVNGATSAVSAGLYTIGV 886
+KGI FDMDGTLT+SD LHFE YR+T LK P++N G P+ +YD+ +SG++N IV L P ++ LW +KE LYR S ++PLPG++ LD C + ++VTNAPR++ HT+ L L +R S+I +IG E AR KP PD Y EGL RLGL A++C+AFEDS +G SAV+AG+ T+ V
Sbjct: 72 IKGICFDMDGTLTNSDDLHFETYRDTLLKFAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEALYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLKDRFHDSKI----------IIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLASAVAAGIPTVAV 261
BLAST of mRNA_A-nodosum_M_contig98.13.2 vs. uniprot
Match: A0A2V3J516_9FLOR (Haloacid dehalogenase-like hydrolase domain-containing protein Sgpp n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J516_9FLOR) HSP 1 Score: 182 bits (463), Expect = 4.130e-51 Identity = 99/239 (41.42%), Postives = 139/239 (58.16%), Query Frame = 2
Query: 269 PP--MPSTVKGILFDMDGTLTDSDSLHFEAYRETFLKVTPDFNGGTPITNDYYDEWMSGNSNAAIVEKLFPDKLKEEQTALWKSKEELYRNISTK-MTPLPGLLAFLDRCRRAGLAMIIVTNAPRLDAEHTMQVLDLYNRQDVSEIGQGVSFGKTMVIGCECARAKPHPDPYLEGLSRLGLKAEDCVAFEDSVNGATSAVSAGLYTIGV-GEGAGEKLRGVGVEMAVANFLDSRLSCTL 973
PP + T+K ILFD+DGT +SD +H+E YR+T L++ P FNGG PIT ++YD MSG N +V K+ P EQT LW++KE Y ++ +K ++P+ GL+ + RC++ G+ IVTNAP+ T VS IG FG +V+ EC KPHP PYL L G+ A++ +AFEDS +G SA+ AGL TIG+ + E LR G V ++ D +L L
Sbjct: 10 PPESIEGTLKAILFDLDGTCLNSDHIHYECYRDTLLELIPSFNGGKPITREFYDSEMSGRQNPELVSKILPQLPLHEQTRLWQTKESRYEDVISKGVSPIAGLIELIKRCKQDGIITYIVTNAPKGTCVKT-----------VSSIGITEYFGSHVVVAEECEYPKPHPAPYLRALELAGVSAKEAIAFEDSPSGTRSAIGAGLLTIGMRSTQSDETLRSFGAAFTVRDYNDPKLLSAL 237
BLAST of mRNA_A-nodosum_M_contig98.13.2 vs. uniprot
Match: A0A1X6NWD3_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NWD3_PORUM) HSP 1 Score: 175 bits (443), Expect = 1.170e-47 Identity = 102/253 (40.32%), Postives = 143/253 (56.52%), Query Frame = 2
Query: 248 QDAVAQHPPMPS---TVKGILFDMDGTLTDSDSLHFEAYRETFLKVTPDFNGGTPITNDYYDEWMSGNSNAAIVEKLFPDKLKEEQTALWKSKEELY-RNISTKMTPLPGLLAFLDRCRRAGLAMIIVTNAPRLDAEHTMQVLDLYNRQDVSEIGQGVSFGKTMVIGCECARAKPHPDPYLEGLSRLGLKAEDCVAFEDSVNGATSAVSAGLYTIGVGEG-AGEKLRGVGVEMAVANFLDSRLSCTLGLGGSE 991
+DA+A PP+ + T+ +LFDMDGTL D HFEAY +T L++ P FNGG IT ++Y+ MSG N +++++ PD E + +KE Y R + + L G A LD AG+ + +VTNAPR EHT+ L +R V +++G ECARAKP PDPY++G L ++ + +AFEDS +G TSAV+AGL TIGVG G L G + ++ D RL+ LGL E
Sbjct: 32 RDAMAGSPPISTQGGTLSAVLFDMDGTLVAGDDHHFEAYADTLLEMEPQFNGGKRITREFYNTRMSGRQNPVLLKEIMPDVSPERGVVIADTKERAYMRRTAGAIEALAGAAALLDVLAAAGVRLGVVTNAPREIMEHTLGEAALRDRFPV------------VIVGDECARAKPFPDPYVDGCRALDVQPREAIAFEDSPSGITSAVAAGLLTIGVGTGHPPATLLAAGAAFVIHDYYDERLATVLGLWLGE 272
BLAST of mRNA_A-nodosum_M_contig98.13.2 vs. uniprot
Match: A0A5E6QD40_PSEFL (Phosphorylated carbohydrates phosphatase n=5 Tax=Pseudomonas TaxID=286 RepID=A0A5E6QD40_PSEFL) HSP 1 Score: 158 bits (400), Expect = 3.480e-42 Identity = 88/223 (39.46%), Postives = 133/223 (59.64%), Query Frame = 2
Query: 296 ILFDMDGTLTDSDSLHFEAYRETFLKVTPDFNGGTPITNDYYDEWMSGNSNAAIVEKLFPDKLKEEQTALWKSKEELYRNISTKMTPLPGLLAFLDRCRRAGLAMIIVTNAPRLDAEHTMQVLDLYNRQDVSEIGQGVSFGKTMVIGCECARAKPHPDPYLEGLSRLGLKAEDCVAFEDSVNGATSAVSAGLYTIGVGEG-AGEKLRGVGVEMAVANFLDSRL 961
+LFD+DGTLTD+D+LH +A+R+ + G +T +DE +SG +N + +LFPD+ ++ AL + KE L+R ++ ++ PLPGLL LD + + M +VTNAPRL+AEH + + L R F + +V E ARAKP P PYL GL RL AE +AFEDS+ G T+A +AG++T+ + E+L+ G ++ + +F D RL
Sbjct: 5 LLFDLDGTLTDTDTLHLQAFRQLLHEQD-----GRELTQAQFDEQISGQANGELFARLFPDQSPAQRQALAERKEALFRELAPELQPLPGLLRLLDYAQAEAIGMCVVTNAPRLNAEHMLGAMGLTQR-----------FTQVLVAD-ELARAKPDPLPYLTGLERLQANAEHALAFEDSLPGVTAASAAGIFTVAIATTQTAERLQQAGAQLVIDDFNDPRL 210
BLAST of mRNA_A-nodosum_M_contig98.13.2 vs. uniprot
Match: C1FHX1_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FHX1_MICCC) HSP 1 Score: 159 bits (402), Expect = 4.960e-42 Identity = 97/235 (41.28%), Postives = 133/235 (56.60%), Query Frame = 2
Query: 299 LFDMDGTLTDSDSLHFEAYRETFLKVTPDFNGGTPITNDYYDEWMSGNSNAAIVEKLFPDKLKEEQTALWKSKEELYRNIS-TKMTPLPGLLAFLDRCRRAGLAMIIVTNAPRLDAEHTMQVLDLYNRQDVSEIGQGVSFGKTMVIGCECARAKPHPDPYLEGLSRLG-LKAEDCVAFEDSVNGATSAVSAGLYTIGVGEGA-GEKLRGVGVEMAVANFLDSRLSCTLGLGGSED 994
LFDMDGTL D+D LH E + L NGG PI +D++ + ++G +N I L+P+ E+ A+W+ KEE +R ++ TK+ LPGL L G+ + VTNAPR +AE + L L + + +VIG EC +AKPHPDPYLEG+ +G + A CVAFEDS GA +AV+AG+ T+GV L GVGV + V NF + RL L GS +
Sbjct: 30 LFDMDGTLCDTDPLHHEVFSNLLLAHGK--NGGVPIDDDFFHKHIAGRTNEDIFADLWPELSVPEREAMWEKKEEDFRALAATKLRRLPGLTELLAWIDARGIRKVAVTNAPRPNAELMLTSLGLDG------------YFEHVVIGTECTKAKPHPDPYLEGMRLVGAVDASRCVAFEDSPAGAAAAVAAGIPTVGVTTSQPSSALEGVGVSLCVKNFAEERLMLALESRGSRE 250
BLAST of mRNA_A-nodosum_M_contig98.13.2 vs. uniprot
Match: A0A2L1HLM5_9PSED (Haloacid dehalogenase n=2 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A2L1HLM5_9PSED) HSP 1 Score: 156 bits (394), Expect = 2.600e-41 Identity = 88/223 (39.46%), Postives = 130/223 (58.30%), Query Frame = 2
Query: 296 ILFDMDGTLTDSDSLHFEAYRETFLKVTPDFNGGTPITNDYYDEWMSGNSNAAIVEKLFPDKLKEEQTALWKSKEELYRNISTKMTPLPGLLAFLDRCRRAGLAMIIVTNAPRLDAEHTMQVLDLYNRQDVSEIGQGVSFGKTMVIGCECARAKPHPDPYLEGLSRLGLKAEDCVAFEDSVNGATSAVSAGLYTIGVGEG-AGEKLRGVGVEMAVANFLDSRL 961
+LFD+DGTLTD+D+LH +A+R+ + + G +T +D +SG +N + +LFP ++ AL KE L+R ++ + P+PGLL L+ + G+ M +VTNAPRL+AEH + S +G G F +V E AR KP P PYL GL RLG +A +AFEDS+ G +A AG++T+G+ E+L G ++ VA+F DSRL
Sbjct: 5 LLFDLDGTLTDTDTLHLQAFRQLLRE-----HDGRELTQAQFDAQVSGRANGELFAELFPKASTVQRLALADRKEALFRELAPALEPMPGLLRLLEHAQAQGIGMCVVTNAPRLNAEHML-----------SAMGLGARFEHVLVAE-ELARPKPDPLPYLTGLQRLGAEAGQALAFEDSLPGVKAASGAGIFTVGIATTQTPEQLLAAGAQLVVADFADSRL 210 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig98.13.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig98.13.2 >prot_A-nodosum_M_contig98.13.2 ID=prot_A-nodosum_M_contig98.13.2|Name=mRNA_A-nodosum_M_contig98.13.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=314bp MTHTYKLPDLLHPKINSVFSSLCRVGVLFAVGLVLLSDGAYAFIGSTSFSback to top mRNA from alignment at A-nodosum_M_contig98:169275..179832+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig98.13.2 ID=mRNA_A-nodosum_M_contig98.13.2|Name=mRNA_A-nodosum_M_contig98.13.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=10558bp|location=Sequence derived from alignment at A-nodosum_M_contig98:169275..179832+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig98:169275..179832+ >mRNA_A-nodosum_M_contig98.13.2 ID=mRNA_A-nodosum_M_contig98.13.2|Name=mRNA_A-nodosum_M_contig98.13.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=942bp|location=Sequence derived from alignment at A-nodosum_M_contig98:169275..179832+ (Ascophyllum nodosum dioecious)back to top |