mRNA_A-nodosum_M_contig98.12.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig98.12.1 vs. uniprot
Match: D8LK34_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK34_ECTSI) HSP 1 Score: 834 bits (2154), Expect = 2.300e-285 Identity = 535/1005 (53.23%), Postives = 626/1005 (62.29%), Query Frame = 1
Query: 103 MVVDLLAASRRPLQKLLHDCRFSEWENIALFLDSGATEAVRWAGGLGYILSELGISVVVDLQAFAPGRGRADRAPGSDNITRGIFLVTTFIWDVEGAILNAAKTYGLTEVNVACSVSEDAHACHPHASHISEETSGRVSFADISQQLNVTLVRMLKIETQSNSSRFRSGGFPSDASSFTFDVEGPFALSP-AVPH--HREPPPTVLVSVLHSPLHMGCFLQCPPC----------PNRPTDYEEQGERQR-CPAFSLASPACAGTFPLRRCDIGGIGGAGAALLSAAGAVEGKGEGI----SEGRILAEEVPRDERLRYRLLAHVLAEVLWEQLLLDVSGGGGVFTLGSTSHLIGTTLVAAAEEMKRSFLSK-------AEGSGEDFT-GRGGSGGSE-----KRREAAVVLVDRTLDLAVAASRGGSLLQRILSSLSRTGTSTTA----PTSPSVA--DWSPMASAHQQDVGVILPALAPGLGVPAPAAGSPTGLSNLNVDNNTASGGGVDGGGRPTASAETREEEGGMDEAGYRAGMPRLRAMKALATLAWPAPPSLCHPG--SAAAERAVHGMACLDEENGQAGLVSALERCISDHGCVPPPRKRRGMGSSIMALVTSLARGNPRSGGLTGDQVCFRCRGVVQVALAAMEAHQRTSALAGSSWLETVTAERVQRQELRDGGTSQEVMEQLCATLRSSKP--------------TSSGVGEAEAGLENR-ALLMALRGVSLAGGSIGADEASSFRKAWVTRMLTCCSQGEGSGLPADVVEIFERLPSLRRR------DAAKEVKHYRKEEGGARLELEDMARERIQRLREAAGSRS-HLTSPA-LRDLALQPYTFVASAAP------------------------GTEDGGQHDRLGEGVGXXXXXXXXXXXXXXXXXXXXXXXSMGRSASVEHTTECDTLVGRLAGLMLDRTRSTVDNTVPDLQESKLMSAASVGLGLLSSGLKKFARIRTGGVLGNRKKHR 2859
M VDLLAASRRPL++LLH+C FS+WENIALFLD GATEAVRWAGGLG++L ELGIS ++DLQAFAPGR P S+ +TRGIFLVT F+WDVEGA+L+AA TYGLTEV +ACSVSE+AHACH HA+HISEET GR SFA +SQQL V+L RMLKI+ QS+SS R PS +S+ ++ A PH PTVLV++ HSPLH+GCF Q ++P D QG+ Q+ C AFSLASPACA FPLRRCD G + G + AEEVPR ERLRYRLLAH L E LW+QLLLDVSGGGGVFTLG TS LIGTT+ A AE++KR L + EG + + GRGG GS+ RREA+VVL+DR LD+A AAS GGSLLQRILSS+ RTGT +A P+SP DWSP A+AHQQDVGV+LP L PGLG+PA AA S PRL AMKAL+ W APPSLCH G + AA VH MAC EE GQA L+SALE+C+SD+GCVPPPRKRRGMGSSIMALVTSLARGNPR+GGL+GD+VCF+ RGV+QVALAAMEAHQRTS+LAGS W ETV AERVQ ++LRDG T VMEQLCATL + P S G G A G R ALL+ALRGVSLAG SIGA +A+SFRKAW++RML + GSG+PA V E +++ S +R AA+ V EE G LELED+ARER QRLRE A SRS HL S A LRDL +PYTFVASA G +D G+ D GEG + + EHT ECDTLVGRLAGL+LDRTR VPDL E+K++S ASVGLGLLSSGLKK R+ G +R +H+
Sbjct: 1 MAVDLLAASRRPLERLLHECSFSQWENIALFLDEGATEAVRWAGGLGFVLEELGISHILDLQAFAPGRS-PPAVPESEGLTRGIFLVTNFVWDVEGAVLHAACTYGLTEVALACSVSEEAHACHSHAAHISEETGGRASFAVVSQQLKVSLERMLKIKAQSSSSGRRRFSKPSPSSTXXXXXXXTQTIATEAAPHLAANAVDPTVLVTIKHSPLHVGCFFQASTTITSGGGSSVDVDQPLD--SQGQHQKGCSAFSLASPACARVFPLRRCDWEGXXXXXXXXXXXXXXXXXXXXXXXXXETRGHVSAEEVPRGERLRYRLLAHTLVEALWDQLLLDVSGGGGVFTLGDTSRLIGTTVAAVAEDLKRVSLERPAPPGFGGEGGADSASSGRGGGFGSDGAGPAARREASVVLIDRNLDVAAAASHGGSLLQRILSSIDRTGTPNSAVPATPSSPEAVAIDWSPSAAAHQQDVGVVLPMLTPGLGLPARAAAV-------------------------ERSGXXXXXXXXXXXXXXXGKPPRLLAMKALSGFPWRAPPSLCHSGGDAGAAAGVVHAMACHGEEEGQAALISALEKCVSDNGCVPPPRKRRGMGSSIMALVTSLARGNPRAGGLSGDRVCFKSRGVLQVALAAMEAHQRTSSLAGSGWSETVAAERVQLRQLRDGSTVDVVMEQLCATLNRAPPMDFSSSSSSPPGGTASLGAGAARTGSSAREALLLALRGVSLAGESIGAQDATSFRKAWISRMLAGGFREGGSGVPAGVAEAVDQIRSRKRERTTAPEPAAESVGTGEVEEAGVLLELEDIARERTQRLREVASSRSFHLKSTAVLRDLGFEPYTFVASATAXXXXXXXXXXXXXXXXXXXXXXEEGWDDWGE-DEAGEGT--------------------PGVANDDGGSRTEHTAECDTLVGRLAGLLLDRTRP----DVPDLYEAKVVSPASVGLGLLSSGLKKLGRMGGAGGGVHRGRHK 952
BLAST of mRNA_A-nodosum_M_contig98.12.1 vs. uniprot
Match: A0A6A3JAG4_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JAG4_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 4.330e-11 Identity = 111/386 (28.76%), Postives = 154/386 (39.90%), Query Frame = 1
Query: 199 DSGATEAVRWAGGLGYILSELGISVVVDLQAFAPGRGRAD-RA----PGSDNITRGIFLVTTFIWDVEGAILNAAKTYGLTEVNVACSVSEDAHACHPHASHISEETSGRVSFADISQQLNVTLVRMLKIETQSNSSRFRSGGFPSDASSFTFDVEGPFALSPAVPHHREPPPTVLVSVLHSPLHMGCFLQCPPCPNRPTDYEEQGERQRCPAFSLASPACAGTFPLRRCDIGGIGGAGAALLSAAGAVEGKGEGISEGRILAEEVPRDERLRYRLLAHVLAEVLWEQLLLDVSGGGGVFTLGSTSHLIGTTLVAAAEEMKRSFLSKAEGSGEDFTGRGGSGGSEKRREAAVVLVDRTLDLAVAASRGGSLLQRILSSLSRTGTST 1341
+SG E++RWAG L +L +LG+ V+ + A RA ++++ + L++ F+WD E A+ V V S+SE AH C+ R A + L + L TQ N + DA DVE V VLH PL++ L N+ E F L+ CA FPL + + + + A EG + + +L +P R RLLA+ LAEV L DV +F LG+TS IG TL+ EM+ E GR G AA+V+VDRT DLA S G SLL RIL+ L +T T T
Sbjct: 30 ESGCVESLRWAGALPLLLRDLGVCNVLAAERLLECASAAQLRALLLLDENESVGHLVLLLSGFLWDYEAALTRLLALGVARRVTVCSSLSERAHECYDFGGG-GGAAGARAPNAMKFEAFAAELGKKLVTPTQ-NGPKSEEEWDWDDA-----DVERSG-----------------VQVLHLPLNVVPLLS-----NKTPTPEPS-------VFVLSHATCAAAFPLLLHQVEDAAASPTSPTNRGTATEGLNKYKNVRDVLPVHIPSAFRRAMRLLAYTLAEVTLGARL-DVKER--IFALGATSLKIGHTLLRILNEMQEE---------ETLQGRQG---------AALVIVDRTSDLATPCSFGSSLLDRILALLPQTPTQT 358 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig98.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig98.12.1 >prot_A-nodosum_M_contig98.12.1 ID=prot_A-nodosum_M_contig98.12.1|Name=mRNA_A-nodosum_M_contig98.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=995bp MVVDLLAASRRPLQKLLHDCRFSEWENIALFLDSGATEAVRWAGGLGYILback to top mRNA from alignment at A-nodosum_M_contig98:157580..169142- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig98.12.1 ID=mRNA_A-nodosum_M_contig98.12.1|Name=mRNA_A-nodosum_M_contig98.12.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=11563bp|location=Sequence derived from alignment at A-nodosum_M_contig98:157580..169142- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig98:157580..169142- >mRNA_A-nodosum_M_contig98.12.1 ID=mRNA_A-nodosum_M_contig98.12.1|Name=mRNA_A-nodosum_M_contig98.12.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=2985bp|location=Sequence derived from alignment at A-nodosum_M_contig98:157580..169142- (Ascophyllum nodosum dioecious)back to top |