mRNA_A-nodosum_M_contig9798.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9798.1.1
Unique NamemRNA_A-nodosum_M_contig9798.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig9798.1.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 7.450e-23
Identity = 59/139 (42.45%), Postives = 78/139 (56.12%), Query Frame = 1 
Query:    1 VRTDGGGGF-EGEFQLLLKELGIKRETTPPHTPQYNGVVERALGLLRDKTVA-------LLRDMNAGKSDRLWAEAMKYACEMPNRCKTTSLNPGVSPYELWVGH-RPTFDHLIPFGTVGYLRRPRPEHKLAPRGAKCI 390
            VR+D GG F  G+F  +  EL IK+E TP ++PQYNGV ER LGL+ +  +A       L   +   K+D+LWAEAM +ACE  N    ++    +SPYE+W G  RP   +  PF    Y R  RP  KL P+G  C 
Sbjct:  159 VRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY--PFSKPAYCRWQRPS-KLLPKGESCF 294
[Close]
BLAST of mRNA_A-nodosum_M_contig9798.1.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 3.590e-22
Identity = 60/139 (43.17%), Postives = 77/139 (55.40%), Query Frame = 1 
Query:    1 VRTDGGGGF-EGEFQLLLKELGIKRETTPPHTPQYNGVVERALGLLRDKTVA-------LLRDMNAGKSDRLWAEAMKYACEMPNRCKTTSLNPGVSPYELWVGH-RPTFDHLIPFGTVGYLRRPRPEHKLAPRGAKCI 390
            VR+D GGGF  GEF  +  EL IK+E TP H+P++NGV ER LGL  +  +A       L   +   K+DRLWAEAM +ACE  N    ++     SPYE+W G  RP   +  PF    Y +  RP  KL P+G  C 
Sbjct:  192 VRSDNGGGFFGGEFASVCNELVIKQEFTPAHSPEFNGVAERGLGLTEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY--PFLKPAYCKWQRPS-KLLPKGESCF 327
[Close]
BLAST of mRNA_A-nodosum_M_contig9798.1.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 5.850e-22
Identity = 60/139 (43.17%), Postives = 78/139 (56.12%), Query Frame = 1 
Query:    1 VRTDGGGGF-EGEFQLLLKELGIKRETTPPHTPQYNGVVERALGLLRDKTVA-------LLRDMNAGKSDRLWAEAMKYACEMPNRCKTTSLNPGVSPYELWVGH-RPTFDHLIPFGTVGYLRRPRPEHKLAPRGAKCI 390
            VR+D GG F  GEF  +  EL IK+E TP ++PQYNGV ER LGL+ +  +A       L   +   K+D+LWAEAM +ACE  N    ++    +SPYE+W G  RP   +  PF    Y R  RP  KL P+G  C 
Sbjct:  379 VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY--PFLKPAYCRWQRPT-KLLPKGESCF 514
[Close]
BLAST of mRNA_A-nodosum_M_contig9798.1.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 6.660e-22
Identity = 60/139 (43.17%), Postives = 78/139 (56.12%), Query Frame = 1 
Query:    1 VRTDGGGGF-EGEFQLLLKELGIKRETTPPHTPQYNGVVERALGLLRDKTVA-------LLRDMNAGKSDRLWAEAMKYACEMPNRCKTTSLNPGVSPYELWVGH-RPTFDHLIPFGTVGYLRRPRPEHKLAPRGAKCI 390
            VR+D GG F  GEF  +  EL IK+E TP ++PQYNGV ER LGL+ +  +A       L   +   K+D+LWAEAM +ACE  N    ++    +SPYE+W G  RP   +  PF    Y R  RP  KL P+G  C 
Sbjct:   45 VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY--PFLKPAYCRWQRPT-KLLPKGESCF 180
[Close]
BLAST of mRNA_A-nodosum_M_contig9798.1.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 6.800e-22
Identity = 60/139 (43.17%), Postives = 78/139 (56.12%), Query Frame = 1 
Query:    1 VRTDGGGGF-EGEFQLLLKELGIKRETTPPHTPQYNGVVERALGLLRDKTVA-------LLRDMNAGKSDRLWAEAMKYACEMPNRCKTTSLNPGVSPYELWVGH-RPTFDHLIPFGTVGYLRRPRPEHKLAPRGAKCI 390
            VR+D GG F  GEF  +  EL IK+E TP ++PQYNGV ER LGL+ +  +A       L   +   K+D+LWAEAM +ACE  N    ++    +SPYE+W G  RP   +  PF    Y R  RP  KL P+G  C 
Sbjct:  312 VRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY--PFLKPAYCRWQRPT-KLLPKGESCF 447
[Close]
BLAST of mRNA_A-nodosum_M_contig9798.1.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 9.390e-22
Identity = 60/139 (43.17%), Postives = 77/139 (55.40%), Query Frame = 1 
Query:    1 VRTDGGGGF-EGEFQLLLKELGIKRETTPPHTPQYNGVVERALGLLRDKTVA-------LLRDMNAGKSDRLWAEAMKYACEMPNRCKTTSLNPGVSPYELWVGH-RPTFDHLIPFGTVGYLRRPRPEHKLAPRGAKCI 390
            VR+D GG F  GEF  +  EL IK+E TP H+PQYNGV ER LGL+ +  +A       L   +   K+D+LWAEAM +ACE  N    ++     SPYE+W G  RP   +  PF    Y +  RP  KL P+G  C 
Sbjct:  395 VRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY--PFLKPAYCKWQRPS-KLFPKGESCF 530
[Close]
BLAST of mRNA_A-nodosum_M_contig9798.1.1 vs. uniprot
Match: A0A6H5KWE4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWE4_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.080e-21
Identity = 59/138 (42.75%), Postives = 74/138 (53.62%), Query Frame = 1 
Query:    1 VRTDGGGGF-EGEFQLLLKELGIKRETTPPHTPQYNGVVERALGLLRDKTVA-------LLRDMNAGKSDRLWAEAMKYACEMPNRCKTTSLNPGVSPYELWVGHRPTFDHLIPFGTVGYLRRPRPEHKLAPRGAKCI 390
            VR+D GG F  GEF  +  EL IK+E TP ++PQYNGV ER LGL+    +A       L   +   K+DRLWAEAM +ACE  N    ++     SPYE+W G   +     PF    Y R  RP  KL P+G  C 
Sbjct:   45 VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEA-SHARPYPFLKPAYCRWQRPS-KLLPKGEACF 180
[Close]
BLAST of mRNA_A-nodosum_M_contig9798.1.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.270e-21
Identity = 60/139 (43.17%), Postives = 77/139 (55.40%), Query Frame = 1 
Query:    1 VRTDGGGGF-EGEFQLLLKELGIKRETTPPHTPQYNGVVERALGLLRDKTVA-------LLRDMNAGKSDRLWAEAMKYACEMPNRCKTTSLNPGVSPYELWVGH-RPTFDHLIPFGTVGYLRRPRPEHKLAPRGAKCI 390
            VR+D GG F  GEF  +  EL IK+E TP ++PQYNGV ER LGL+ +  +A       L   +   K+D+LWAEAM +ACE  N    ++     SPYE+W G  RP   +  PF    Y R  RP  KL P+G  C 
Sbjct:  791 VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPY--PFLKPAYCRWQRPS-KLLPKGESCF 926
[Close]
BLAST of mRNA_A-nodosum_M_contig9798.1.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.270e-21
Identity = 60/139 (43.17%), Postives = 77/139 (55.40%), Query Frame = 1 
Query:    1 VRTDGGGGF-EGEFQLLLKELGIKRETTPPHTPQYNGVVERALGLLRDKTVA-------LLRDMNAGKSDRLWAEAMKYACEMPNRCKTTSLNPGVSPYELWVGH-RPTFDHLIPFGTVGYLRRPRPEHKLAPRGAKCI 390
            VR+D GG F  GEF  +  EL IK+E TP ++PQYNGV ER LGL+ +  +A       L   +   K+D+LWAEAM +ACE  N    ++     SPYE+W G  RP   +  PF    Y R  RP  KL P+G  C 
Sbjct:  498 VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPY--PFLKPAYCRWQRPS-KLLPKGESCF 633
[Close]
BLAST of mRNA_A-nodosum_M_contig9798.1.1 vs. uniprot
Match: A0A535F0V1_9CHLR (DDE-type integrase/transposase/recombinase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535F0V1_9CHLR)

HSP 1 Score: 98.6 bits (244), Expect = 2.300e-21
Identity = 56/133 (42.11%), Postives = 73/133 (54.89%), Query Frame = 1 
Query:    1 VRTDGGGGFEGEFQLLLKELGIKRETTPPHTPQYNGVVERALGLLRDKTVALLRDMNAGKSDRLWAEAMKYACEMPNRCKTTSLNPGVSPYELWVGHRPTFDHLIPFGTVGYLRRPRPEH-KLAPRGAKCIML 396
            +RTDGGG +  E ++LLK  GI+ + T PHTPQ NGV ER    L D    +L   N      LWAEA+  AC + NR  T +L+ G +PYE W G +P  D L  FG V Y   P+    KL  +  K I++
Sbjct:  173 IRTDGGGEYHKEMEVLLKGTGIEHQETAPHTPQSNGVSERMNRTLMDMVCPMLEASNTPLE--LWAEAVAAACYIKNRLPTRALD-GKTPYEAWTGEKPRVDQLRKFGCVVYRHIPKKRRRKLDSKSMKGILV 302
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9798.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVR5_9PHAE7.450e-2342.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J594_9PHAE3.590e-2243.17Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV76_9PHAE5.850e-2243.17Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KKK1_9PHAE6.660e-2243.17Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE6.800e-2243.17Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JB16_9PHAE9.390e-2243.17Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KWE4_9PHAE1.080e-2142.75Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JBA7_9PHAE1.270e-2143.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE1.270e-2143.17Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A535F0V1_9CHLR2.300e-2142.11DDE-type integrase/transposase/recombinase (Fragme... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9798contigA-nodosum_M_contig9798:17922..18317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog15368.BRADI2G01680.1
PFAMsRVT_2,gag_pre-integrs,rve
Model size396
Max annot lvl35493|Streptophyta
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.72e-17
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,3M2IR@4447|Liliopsida,3IKX9@38820|Poales
EC3.6.4.12
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size396
COG categoryL
BRITEko00000,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870506.7862515-CDS-A-nodosum_M_contig9798:17921..183171680870506.7862515-CDS-A-nodosum_M_contig9798:17921..18317Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9798 17922..18317 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9798.1.1prot_A-nodosum_M_contig9798.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9798 17922..18317 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9798.1.1

>prot_A-nodosum_M_contig9798.1.1 ID=prot_A-nodosum_M_contig9798.1.1|Name=mRNA_A-nodosum_M_contig9798.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=132bp
VRTDGGGGFEGEFQLLLKELGIKRETTPPHTPQYNGVVERALGLLRDKTV
ALLRDMNAGKSDRLWAEAMKYACEMPNRCKTTSLNPGVSPYELWVGHRPT
FDHLIPFGTVGYLRRPRPEHKLAPRGAKCIML
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mRNA from alignment at A-nodosum_M_contig9798:17922..18317+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9798.1.1 ID=mRNA_A-nodosum_M_contig9798.1.1|Name=mRNA_A-nodosum_M_contig9798.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=396bp|location=Sequence derived from alignment at A-nodosum_M_contig9798:17922..18317+ (Ascophyllum nodosum dioecious)
GTCCGCACCGACGGTGGAGGAGGGTTCGAAGGCGAATTCCAATTGCTCCT
GAAGGAGCTGGGGATCAAGCGCGAGACGACCCCTCCGCACACACCTCAAT
ACAACGGCGTCGTGGAGCGGGCGCTTGGACTCCTACGAGACAAGACCGTG
GCCCTTTTACGTGATATGAACGCAGGCAAGAGCGACCGCCTTTGGGCGGA
AGCCATGAAATACGCCTGCGAAATGCCAAACCGCTGCAAGACAACCTCCC
TCAACCCCGGTGTCTCCCCATACGAACTCTGGGTCGGACACCGGCCCACG
TTCGATCACCTCATCCCGTTTGGAACCGTCGGATACTTGCGGCGACCCAG
ACCCGAGCACAAGCTGGCGCCACGCGGGGCCAAGTGCATCATGCTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9798:17922..18317+

>mRNA_A-nodosum_M_contig9798.1.1 ID=mRNA_A-nodosum_M_contig9798.1.1|Name=mRNA_A-nodosum_M_contig9798.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at A-nodosum_M_contig9798:17922..18317+ (Ascophyllum nodosum dioecious)
GTCCGCACCGACGGTGGAGGAGGGTTCGAAGGCGAATTCCAATTGCTCCT
GAAGGAGCTGGGGATCAAGCGCGAGACGACCCCTCCGCACACACCTCAAT
ACAACGGCGTCGTGGAGCGGGCGCTTGGACTCCTACGAGACAAGACCGTG
GCCCTTTTACGTGATATGAACGCAGGCAAGAGCGACCGCCTTTGGGCGGA
AGCCATGAAATACGCCTGCGAAATGCCAAACCGCTGCAAGACAACCTCCC
TCAACCCCGGTGTCTCCCCATACGAACTCTGGGTCGGACACCGGCCCACG
TTCGATCACCTCATCCCGTTTGGAACCGTCGGATACTTGCGGCGACCCAG
ACCCGAGCACAAGCTGGCGCCACGCGGGGCCAAGTGCATCATGCTC
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