mRNA_A-nodosum_M_contig979.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig979.1.1
Unique NamemRNA_A-nodosum_M_contig979.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig979.1.1 vs. uniprot
Match: A0A6H5KXN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXN6_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.140e-10
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    1 PTENESIGALRSIANGKAVGPDELPVELLKLRINHDPTVLREFHRVIKLVWHQREVPQRE 180
            P+  E   A+R +AN KAVGPD+LP EL+KL ++ D  +LREFH ++  VW   +VPQ+E
Sbjct:   80 PSLLEIEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQE 139
[Close]
BLAST of mRNA_A-nodosum_M_contig979.1.1 vs. uniprot
Match: A0A6H5L6J0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6J0_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 6.050e-10
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    1 PTENESIGALRSIANGKAVGPDELPVELLKLRINHDPTVLREFHRVIKLVWHQREVPQ 174
            P+  E   A+R +AN KAVGPD+LP EL+KL ++ D  +LREFH V+  VW  R+VPQ
Sbjct:   69 PSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAVVVDVWQTRDVPQ 126
[Close]
BLAST of mRNA_A-nodosum_M_contig979.1.1 vs. uniprot
Match: A0A6H5JHD4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHD4_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 7.280e-10
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 PTENESIGALRSIANGKAVGPDELPVELLKLRINHDPTVLREFHRVIKLVWHQREVPQ 174
            P+  E   A+R +AN KAVGPD+LP EL+KL ++ D  +LREFH  +  VW  R++PQ
Sbjct:   69 PSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHATVVDVWQTRDIPQ 126
[Close]
BLAST of mRNA_A-nodosum_M_contig979.1.1 vs. uniprot
Match: A0A6H5L012_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L012_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.420e-9
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 PTENESIGALRSIANGKAVGPDELPVELLKLRINHDPTVLREFHRVIKLVWHQREVPQ 174
            P+  E   A+R +AN KAVGPD+LP EL+KL ++ D  +LREFH ++  VW   +VPQ
Sbjct:  136 PSLREVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQ 193
[Close]
BLAST of mRNA_A-nodosum_M_contig979.1.1 vs. uniprot
Match: A0A6H5KC64_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC64_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.550e-9
Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    1 PTENESIGALRSIANGKAVGPDELPVELLKLRINHDPTVLREFHRVIKLVWHQREVPQ 174
            P++ E   A+R +AN KAVGPD+LP EL+KL ++ D  +LREFH ++  VW   +VPQ
Sbjct:  325 PSQLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQ 382
[Close]
BLAST of mRNA_A-nodosum_M_contig979.1.1 vs. uniprot
Match: A0A6H5K8I2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8I2_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.960e-9
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 PTENESIGALRSIANGKAVGPDELPVELLKLRINHDPTVLREFHRVIKLVWHQREVPQ 174
            P+  E   A+R +AN KAVGPD+LP EL+KL ++ D  +LREFH ++  VW   +VPQ
Sbjct:  102 PSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQ 159
[Close]
BLAST of mRNA_A-nodosum_M_contig979.1.1 vs. uniprot
Match: A0A6H5JTX5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX5_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.960e-9
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 PTENESIGALRSIANGKAVGPDELPVELLKLRINHDPTVLREFHRVIKLVWHQREVPQ 174
            P+  E   A+R +AN KAVGPD+LP EL+KL ++ D  +LREFH ++  VW   +VPQ
Sbjct:   84 PSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQ 141
[Close]
BLAST of mRNA_A-nodosum_M_contig979.1.1 vs. uniprot
Match: A0A6H5JQE0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQE0_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.380e-9
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 PTENESIGALRSIANGKAVGPDELPVELLKLRINHDPTVLREFHRVIKLVWHQREVPQ 174
            P+  E   A+R +AN KAVGPD+LP EL+KL ++ D  +LREFH ++  VW   +VPQ
Sbjct:   71 PSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHSIVVDVWQTGDVPQ 128
[Close]
BLAST of mRNA_A-nodosum_M_contig979.1.1 vs. uniprot
Match: A0A6H5KXX3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX3_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 3.670e-9
Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:   25 ALRSIANGKAVGPDELPVELLKLRINHDPTVLREFHRVIKLVWHQREVPQ 174
            A+R +AN KAVGPD+LP EL+KL ++ D  +LREFH ++  VW   +VPQ
Sbjct:  106 AVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQ 155
[Close]
BLAST of mRNA_A-nodosum_M_contig979.1.1 vs. uniprot
Match: A0A6H5K0F8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0F8_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.970e-9
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 PTENESIGALRSIANGKAVGPDELPVELLKLRINHDPTVLREFHRVIKLVWHQREVPQ 174
            P+  E   A+R +AN KAVGPD+LP EL+KL ++ D  +LREFH ++  VW   +VPQ
Sbjct:  126 PSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQ 183
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig979.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXN6_9PHAE5.140e-1050.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6J0_9PHAE6.050e-1053.45Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JHD4_9PHAE7.280e-1050.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L012_9PHAE1.420e-950.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC64_9PHAE1.550e-950.00Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K8I2_9PHAE1.960e-950.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX5_9PHAE1.960e-950.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQE0_9PHAE2.380e-950.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KXX3_9PHAE3.670e-954.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K0F8_9PHAE3.970e-950.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig979contigA-nodosum_M_contig979:139481..139672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog7897.ENSLACP00000016254
PFAMsExo_endo_phos,Exo_endo_phos_2,RVT_1
Model size192
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000867
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3CYKV@33213|Bilateria,487I3@7711|Chordata,4962T@7742|Vertebrata
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size192
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870506.5129797-CDS-A-nodosum_M_contig979:139480..1396721680870506.5129797-CDS-A-nodosum_M_contig979:139480..139672Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig979 139481..139672 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig979.1.1prot_A-nodosum_M_contig979.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig979 139481..139672 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig979.1.1

>prot_A-nodosum_M_contig979.1.1 ID=prot_A-nodosum_M_contig979.1.1|Name=mRNA_A-nodosum_M_contig979.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=64bp
PTENESIGALRSIANGKAVGPDELPVELLKLRINHDPTVLREFHRVIKLV
WHQREVPQREMPR*
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mRNA from alignment at A-nodosum_M_contig979:139481..139672-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig979.1.1 ID=mRNA_A-nodosum_M_contig979.1.1|Name=mRNA_A-nodosum_M_contig979.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at A-nodosum_M_contig979:139481..139672- (Ascophyllum nodosum dioecious)
CCGACAGAAAACGAGTCGATCGGGGCCTTGAGGTCGATCGCAAATGGGAA
GGCAGTGGGGCCAGACGAACTCCCTGTTGAACTCCTTAAACTTAGGATAA
ACCATGACCCGACCGTGCTCCGGGAGTTTCACCGGGTGATCAAGCTGGTG
TGGCACCAACGGGAAGTACCGCAGCGAGAGATGCCGAGATAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig979:139481..139672-

>mRNA_A-nodosum_M_contig979.1.1 ID=mRNA_A-nodosum_M_contig979.1.1|Name=mRNA_A-nodosum_M_contig979.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=192bp|location=Sequence derived from alignment at A-nodosum_M_contig979:139481..139672- (Ascophyllum nodosum dioecious)
CCGACAGAAAACGAGTCGATCGGGGCCTTGAGGTCGATCGCAAATGGGAA
GGCAGTGGGGCCAGACGAACTCCCTGTTGAACTCCTTAAACTTAGGATAA
ACCATGACCCGACCGTGCTCCGGGAGTTTCACCGGGTGATCAAGCTGGTG
TGGCACCAACGGGAAGTACCGCAGCGAGAGATGCCGAGATAA
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