mRNA_A-nodosum_M_contig978.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig978.1.1
Unique NamemRNA_A-nodosum_M_contig978.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig978.1.1 vs. uniprot
Match: D8LRH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH9_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 5.190e-38
Identity = 71/133 (53.38%), Postives = 92/133 (69.17%), Query Frame = 1
Query:    1 SGYYSGLLSSSFMIGRFLTSYFWGWFADRYGRRKVILVGLLSATALSVAFGVSWTFXXXXXXXXXXGALSGSEAVAKVLVSEICGKEHEIVGMGSLTTAWSIGLVMGPGLGGLLVEPATRFPSVFPESGIFGR 399
            +GYY+G +SS+FM+GR  +SYFWG FAD +GR  VI  GL S   LS+AFG+S +F          G L+G   ++K + SE+CGKEHE  GM  +    SIGLV+GPGLGGLL EPAT +P+VF +SG+FGR
Sbjct:   68 AGYYAGYVSSAFMVGRVGSSYFWGRFADSHGRLPVIYAGLTSMVVLSIAFGLSTSFLWALGCRFLLGVLNGLLGISKAMTSEVCGKEHEATGMAYVLGCASIGLVIGPGLGGLLAEPATHYPTVFSQSGLFGR 200          
BLAST of mRNA_A-nodosum_M_contig978.1.1 vs. uniprot
Match: D8LRH7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH7_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 3.990e-37
Identity = 69/133 (51.88%), Postives = 91/133 (68.42%), Query Frame = 1
Query:    1 SGYYSGLLSSSFMIGRFLTSYFWGWFADRYGRRKVILVGLLSATALSVAFGVSWTFXXXXXXXXXXGALSGSEAVAKVLVSEICGKEHEIVGMGSLTTAWSIGLVMGPGLGGLLVEPATRFPSVFPESGIFGR 399
            +GYY+G L+S+FM+GRF         ADRYGR  V+ +GL S   LS+AFG+S  F          GA++G  A++K ++SEICGK+HE VGMG +T  WS GLV+GP  GGLL +PAT +P+VF ESG+FGR
Sbjct:   47 AGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAISKCMISEICGKQHETVGMGYITGCWSFGLVIGPAFGGLLAQPATHYPNVFSESGLFGR 179          
BLAST of mRNA_A-nodosum_M_contig978.1.1 vs. uniprot
Match: A0A6H5L4Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q8_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 6.870e-37
Identity = 68/133 (51.13%), Postives = 91/133 (68.42%), Query Frame = 1
Query:    1 SGYYSGLLSSSFMIGRFLTSYFWGWFADRYGRRKVILVGLLSATALSVAFGVSWTFXXXXXXXXXXGALSGSEAVAKVLVSEICGKEHEIVGMGSLTTAWSIGLVMGPGLGGLLVEPATRFPSVFPESGIFGR 399
            +GYY+G L+S+FM+GRF         ADRYGR  V+ +GL S   LS+AFG+S  F          GA++G  A++K ++SEICGK+HE VGMG +T  WS GLV+GP  GGLL +PAT +P+VF ESG++GR
Sbjct:   79 AGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAISKCMISEICGKQHEKVGMGYVTGCWSFGLVIGPAFGGLLAQPATHYPNVFSESGLYGR 211          
BLAST of mRNA_A-nodosum_M_contig978.1.1 vs. uniprot
Match: A0A6H5KX19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX19_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 2.460e-35
Identity = 68/133 (51.13%), Postives = 90/133 (67.67%), Query Frame = 1
Query:    1 SGYYSGLLSSSFMIGRFLTSYFWGWFADRYGRRKVILVGLLSATALSVAFGVSWTFXXXXXXXXXXGALSGSEAVAKVLVSEICGKEHEIVGMGSLTTAWSIGLVMGPGLGGLLVEPATRFPSVFPESGIFGR 399
            +GYY+G L+S+FM+GRF TS      ADRYGR  V+ +GL S   LS+AFG+S  F          GA++    ++K ++SEICGK+HE VGMG +T   S GLV+GP  GGLL +PAT +P+VF ESG+FGR
Sbjct:  115 AGYYAGCLASAFMVGRFATSXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNALMGISKCMISEICGKQHETVGMGYVTGCSSFGLVIGPAFGGLLAQPATHYPNVFSESGLFGR 247          
BLAST of mRNA_A-nodosum_M_contig978.1.1 vs. uniprot
Match: A0A835Z5M2_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5M2_9STRA)

HSP 1 Score: 137 bits (344), Expect = 4.510e-35
Identity = 63/132 (47.73%), Postives = 85/132 (64.39%), Query Frame = 1
Query:    4 GYYSGLLSSSFMIGRFLTSYFWGWFADRYGRRKVILVGLLSATALSVAFGVSWTFXXXXXXXXXXGALSGSEAVAKVLVSEICGKEHEIVGMGSLTTAWSIGLVMGPGLGGLLVEPATRFPSVFPESGIFGR 399
            GYY+G ++ +FM+GRF +SY WG F+D+YGR+  +L+G  S    S+ FG+S             GAL+G+ +  KV VSEICGK HE+ GMG +T  WSI  V+GP LGGLL +P  ++P VFP  G F R
Sbjct:    4 GYYAGFIAGAFMLGRFASSYPWGRFSDKYGRKPALLIGAASVCVFSLGFGLSTELWVAVLMRLLLGALNGTVSTCKVCVSEICGKAHEVKGMGYITGCWSISFVIGPALGGLLADPCNQYPGVFPRGGAFER 135          
BLAST of mRNA_A-nodosum_M_contig978.1.1 vs. uniprot
Match: A0A1Q3C8T7_CEPFO (MFS_1 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3C8T7_CEPFO)

HSP 1 Score: 133 bits (334), Expect = 1.610e-34
Identity = 62/132 (46.97%), Postives = 87/132 (65.91%), Query Frame = 1
Query:    4 GYYSGLLSSSFMIGRFLTSYFWGWFADRYGRRKVILVGLLSATALSVAFGVSWTFXXXXXXXXXXGALSGSEAVAKVLVSEICGKEHEIVGMGSLTTAWSIGLVMGPGLGGLLVEPATRFPSVFPESGIFGR 399
            GYY+GL+ +S+M+GR LTS FWG  ADRYGR+ VIL+G  S   L+  FG S  F          G+LSGS    K   +EI  +EH+ +G+ +++T+W IGL++GP LGG L +PA +FP++F E  +FGR
Sbjct:   15 GYYAGLMGASYMLGRALTSVFWGIVADRYGRKPVILIGTFSVAILNTLFGFSINFWMAIGIRFLLGSLSGSLGPIKAFATEIFREEHQALGLSTVSTSWGIGLIIGPALGGFLAQPAEKFPNIFSEDSLFGR 146          
BLAST of mRNA_A-nodosum_M_contig978.1.1 vs. uniprot
Match: UPI000B78907B (protein ZINC INDUCED FACILITATOR 1-like isoform X1 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B78907B)

HSP 1 Score: 132 bits (333), Expect = 3.550e-34
Identity = 62/132 (46.97%), Postives = 84/132 (63.64%), Query Frame = 1
Query:    4 GYYSGLLSSSFMIGRFLTSYFWGWFADRYGRRKVILVGLLSATALSVAFGVSWTFXXXXXXXXXXGALSGSEAVAKVLVSEICGKEHEIVGMGSLTTAWSIGLVMGPGLGGLLVEPATRFPSVFPESGIFGR 399
            GYY+G + S+FM GR LTS  WG  ADRYGR+ +I+ G ++    +  FG+S  F          G+L G    AK  VSEIC +EH+ VGM  +TTAW IGL++GP LGGLL +PA ++P +F +  +FGR
Sbjct:   48 GYYAGFVGSAFMFGRALTSVVWGKLADRYGRKPIIITGTIAVVIFNTMFGLSVNFWMAVSARFLLGSLCGLLGPAKAYVSEICREEHQAVGMSMITTAWGIGLIIGPALGGLLSQPAEKYPQIFSQESLFGR 179          
BLAST of mRNA_A-nodosum_M_contig978.1.1 vs. uniprot
Match: A0A7C9AF44_OPUST (MFS domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AF44_OPUST)

HSP 1 Score: 130 bits (328), Expect = 7.890e-34
Identity = 61/132 (46.21%), Postives = 84/132 (63.64%), Query Frame = 1
Query:    4 GYYSGLLSSSFMIGRFLTSYFWGWFADRYGRRKVILVGLLSATALSVAFGVSWTFXXXXXXXXXXGALSGSEAVAKVLVSEICGKEHEIVGMGSLTTAWSIGLVMGPGLGGLLVEPATRFPSVFPESGIFGR 399
            GYY+G + S+FM+GR LTS FWG  ADRYGR+ V++ G  +    +  FG+S  F          G+L+G    AK  +SE+C +EH+ VGM  +TTAW IGL++GP LGGLL +PA ++P V  E  +F R
Sbjct:   76 GYYAGFVGSAFMLGRALTSVFWGTIADRYGRKPVMIFGAAAVVIFNTLFGLSVNFWMAVSTRFLLGSLNGLLGPAKAYISEVCREEHQAVGMSVITTAWGIGLIIGPALGGLLAQPAEKYPHVVSEGSLFAR 207          
BLAST of mRNA_A-nodosum_M_contig978.1.1 vs. uniprot
Match: UPI0011DF09C2 (protein ZINC INDUCED FACILITATOR 1 isoform X1 n=2 Tax=Cannabis sativa TaxID=3483 RepID=UPI0011DF09C2)

HSP 1 Score: 129 bits (324), Expect = 8.760e-33
Identity = 60/132 (45.45%), Postives = 82/132 (62.12%), Query Frame = 1
Query:    4 GYYSGLLSSSFMIGRFLTSYFWGWFADRYGRRKVILVGLLSATALSVAFGVSWTFXXXXXXXXXXGALSGSEAVAKVLVSEICGKEHEIVGMGSLTTAWSIGLVMGPGLGGLLVEPATRFPSVFPESGIFGR 399
            GYY+G +  +FM GRFLTS FWG  ADRYGR+ V++ G +S    +  FG+S  F          G+L G     +   SEIC KE++ +GM  ++TAW IGLV+GP LGG L +PA +FP +F +  +FGR
Sbjct:   81 GYYAGAVGCAFMFGRFLTSIFWGMIADRYGRKPVLIFGTISVVIFNTLFGLSTNFWMAISTRFLLGSLCGILGPMRAYASEICRKEYQALGMSIISTAWGIGLVIGPALGGFLAQPAEKFPRIFSKESLFGR 212          
BLAST of mRNA_A-nodosum_M_contig978.1.1 vs. uniprot
Match: A0A6P5THQ0_PRUAV (protein ZINC INDUCED FACILITATOR-LIKE 1-like isoform X1 n=3 Tax=Prunus TaxID=3754 RepID=A0A6P5THQ0_PRUAV)

HSP 1 Score: 127 bits (320), Expect = 3.660e-32
Identity = 58/132 (43.94%), Postives = 86/132 (65.15%), Query Frame = 1
Query:    4 GYYSGLLSSSFMIGRFLTSYFWGWFADRYGRRKVILVGLLSATALSVAFGVSWTFXXXXXXXXXXGALSGSEAVAKVLVSEICGKEHEIVGMGSLTTAWSIGLVMGPGLGGLLVEPATRFPSVFPESGIFGR 399
            GYY+G + +S+M+GR LTS  WG  ADRYGR+ VI++G ++   L+  FG+S  F          G L+G     K   SE+  +EH+ +GM +++TAW IGL++GP LGG L +PA ++P++F +S IFGR
Sbjct:   79 GYYAGYVGASYMLGRTLTSVAWGMVADRYGRKPVIIIGTIAVVILNTLFGLSVNFWMAISTRFLLGCLNGILGPIKAYASEVFREEHQAIGMSAVSTAWGIGLIIGPALGGFLAQPAEKYPNIFTQSSIFGR 210          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig978.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRH9_ECTSI5.190e-3853.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRH7_ECTSI3.990e-3751.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4Q8_9PHAE6.870e-3751.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX19_9PHAE2.460e-3551.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z5M2_9STRA4.510e-3547.73Major facilitator superfamily domain-containing pr... [more]
A0A1Q3C8T7_CEPFO1.610e-3446.97MFS_1 domain-containing protein n=1 Tax=Cephalotus... [more]
UPI000B78907B3.550e-3446.97protein ZINC INDUCED FACILITATOR 1-like isoform X1... [more]
A0A7C9AF44_OPUST7.890e-3446.21MFS domain-containing protein (Fragment) n=1 Tax=O... [more]
UPI0011DF09C28.760e-3345.45protein ZINC INDUCED FACILITATOR 1 isoform X1 n=2 ... [more]
A0A6P5THQ0_PRUAV3.660e-3243.94protein ZINC INDUCED FACILITATOR-LIKE 1-like isofo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig978contigA-nodosum_M_contig978:57220..58346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LRH9
PFAMsMFS_1
Model size402
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons3
Evalue8.51e-39
EggNOG OGsKOG2615@1|root,KOG2615@2759|Eukaryota
Descriptionmajor facilitator superfamily
Cds size402
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870506.340063-CDS-A-nodosum_M_contig978:57219..573291680870506.340063-CDS-A-nodosum_M_contig978:57219..57329Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig978 57220..57329 -
1680870506.3567796-CDS-A-nodosum_M_contig978:57857..579611680870506.3567796-CDS-A-nodosum_M_contig978:57857..57961Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig978 57858..57961 -
1680870506.367654-CDS-A-nodosum_M_contig978:58158..583461680870506.367654-CDS-A-nodosum_M_contig978:58158..58346Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig978 58159..58346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig978.1.1prot_A-nodosum_M_contig978.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig978 57220..58346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig978.1.1

>prot_A-nodosum_M_contig978.1.1 ID=prot_A-nodosum_M_contig978.1.1|Name=mRNA_A-nodosum_M_contig978.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=134bp
SGYYSGLLSSSFMIGRFLTSYFWGWFADRYGRRKVILVGLLSATALSVAF
GVSWTFWWAFLMRFLLGALSGSEAVAKVLVSEICGKEHEIVGMGSLTTAW
SIGLVMGPGLGGLLVEPATRFPSVFPESGIFGR*
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mRNA from alignment at A-nodosum_M_contig978:57220..58346-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig978.1.1 ID=mRNA_A-nodosum_M_contig978.1.1|Name=mRNA_A-nodosum_M_contig978.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1127bp|location=Sequence derived from alignment at A-nodosum_M_contig978:57220..58346- (Ascophyllum nodosum dioecious)
TCAGGATACTACTCTGGATTGTTGTCATCAAGCTTCATGATCGGCCGCTT CTTAACATCCTATTTCTGGGGGTGGTTTGCTGATCGATACGGCCGGCGCA AAGTGATCCTTGTCGGGTTATTGTCAGCGACGGCACTCTCCGTGGCGTTT GGAGTGTCCTGGACATTTTGGTGGGCTTTCCTGATGAGGTGAAGGTACTT TGAAAACTTTATTTTTGCTGCAGGAGTCAATATTCGGGTATAATAAGCCG GGACCTAAAATAAAATAATATTGTTCATTCGTTACTCTCGCTCCCGGATC GTCCGTTTGTTTTACTTGTTTTATTTATTTGAATTGTTTTGCTATCGGTG CACGGGGTCGCCTGAACCCCTTGCGATTTCAACAGGTTCTTACTTGGCGC ACTCAGTGGCTCTGAGGCCGTAGCAAAAGTTCTAGTCTCTGAGATCTGCG GCAAGGAGCATGAGATCGTCGGAATGGGTTCCCTTACGAGTGAGTGAGCG GCGAAACGTGTCTATCTCGGGGTGTTTTTTGTGCCGGAGTTATTGCCGAT CCCCCTTCTTTATACAAGCACATCCGCTGGCAGAAAGGTATGGCCAAAAA CAATCTACAAGGTGTTTTTTAACGGTTGATGAAGGCGGGTGACATAAACA GGAGCGAAACGAAAAAGGGAAAGTCTAGGTTTCGCATGAACCGCAAATAA ATGCTAATATTGGGTGAAACCTCTGGTGGTAGTGTGATATAAACTCGGGA CTAACCCTATCGCGGTTGGCGGTATAAATAAGTGAACGCCGTCGTGGATA GCGGGAAGAATCCCGTGAGTAAGCGTCTTGCGAGCTTAAATTCTCAGGCA CGAGCGAGGAAAGGGAAATGATATTTTTCCTGTTCAGCTGACCACGAGCA GAGTTGGCAACCTTCTATACTCTGCTTTAAGTGCTGGTCTTACACAAACG AGGGATATCACGCTCCATTGCAATCTCTTACCGCCACGCCACCTCGCTTC TTCTCTACATGCCATAGCGGCATGGTCAATAGGGCTGGTTATGGGACCAG GTCTCGGAGGCCTTCTAGTTGAGCCGGCGACTCGTTTCCCTTCAGTCTTT CCGGAATCAGGAATATTCGGAAGGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig978:57220..58346-

>mRNA_A-nodosum_M_contig978.1.1 ID=mRNA_A-nodosum_M_contig978.1.1|Name=mRNA_A-nodosum_M_contig978.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at A-nodosum_M_contig978:57220..58346- (Ascophyllum nodosum dioecious)
TCAGGATACTACTCTGGATTGTTGTCATCAAGCTTCATGATCGGCCGCTT
CTTAACATCCTATTTCTGGGGGTGGTTTGCTGATCGATACGGCCGGCGCA
AAGTGATCCTTGTCGGGTTATTGTCAGCGACGGCACTCTCCGTGGCGTTT
GGAGTGTCCTGGACATTTTGGTGGGCTTTCCTGATGAGGTTCTTACTTGG
CGCACTCAGTGGCTCTGAGGCCGTAGCAAAAGTTCTAGTCTCTGAGATCT
GCGGCAAGGAGCATGAGATCGTCGGAATGGGTTCCCTTACGACGGCATGG
TCAATAGGGCTGGTTATGGGACCAGGTCTCGGAGGCCTTCTAGTTGAGCC
GGCGACTCGTTTCCCTTCAGTCTTTCCGGAATCAGGAATATTCGGAAGGT
GA
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