mRNA_A-nodosum_M_contig977.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig977.6.1
Unique NamemRNA_A-nodosum_M_contig977.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig977.6.1 vs. uniprot
Match: D7FX04_ECTSI (Dopamine beta-monooxygenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX04_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 2.650e-21
Identity = 62/138 (44.93%), Postives = 77/138 (55.80%), Query Frame = 1 
Query:   25 RAVYRYVFACPGEARVLAQAATGVCYFNMRAVRSNGDSVVQRSYNATVVRVIRLDASGGAPSPEPPCTSAASPGNAARAKGDPAVGSGIIDSGTEVITKEGK--VRVVPAVDPREGSLCVEMRIRFYKDGAMSKLLDR 432
            R VYRY+F CPG+A+VL Q  TGVCYFNMRA +  G+ V+QRSYNA  VRV   +     P+P                        G++  G    + +G   + VVPA    EG LC+EMRIR Y DGAMSKLL+R
Sbjct:  742 RPVYRYIFLCPGQAQVLPQNITGVCYFNMRA-QEKGNGVIQRSYNAYAVRVRDTN-----PTP---------------------TAGGMLMGGLSHGSDKGAGTLIVVPASQTTEGVLCIEMRIRLYHDGAMSKLLER 852
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BLAST of mRNA_A-nodosum_M_contig977.6.1 vs. uniprot
Match: A0A6H5JBL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL8_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 4.430e-20
Identity = 62/137 (45.26%), Postives = 76/137 (55.47%), Query Frame = 1 
Query:   25 RAVYRYVFACPGEARVLAQAATGVCYFNMRAVRSNGDSVVQRSYNATVVRVIRLDASGGAPSPEPPCTSAASPGNAARAKGDPAVGSGIIDSGTEVITK-EGKVRVVPAVDPREGSLCVEMRIRFYKDGAMSKLLDR 432
            R VYRY+F CPG+A+VL    TGVCYFNMRA +  G  V+QRSYNA  VRV   + +                         PAVG  ++   +    K  G ++VVPA    EG LC+EMRIR Y DGAMSKLL+R
Sbjct: 1434 RPVYRYIFLCPGQAQVLN--ITGVCYFNMRA-QEKGKGVIQRSYNAYAVRVRDTNPT-------------------------PAVGGMLMGGLSHGGDKGAGTLKVVPASQTTEGVLCIEMRIRLYHDGAMSKLLER 1542
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BLAST of mRNA_A-nodosum_M_contig977.6.1 vs. uniprot
Match: A0A6H5K5R1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R1_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 7.200e-6
Identity = 23/35 (65.71%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:  325 GKVRVVPAVDPREGSLCVEMRIRFYKDGAMSKLLD 429
            G ++VVPA + +EG LC+EMRIR Y DGAMSKLL+
Sbjct:   43 GTLKVVPAGETKEGVLCIEMRIRLYTDGAMSKLLE 77
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BLAST of mRNA_A-nodosum_M_contig977.6.1 vs. uniprot
Match: D7G7J2_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J2_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 2.570e-5
Identity = 39/104 (37.50%), Postives = 49/104 (47.12%), Query Frame = 1 
Query:  121 RSNGDSVVQRSYNATVVRVIRLDASGGAPSPEPPCTSAASPGNAARAKGDPAVGSGIIDSGTEVITKEGKVRVVPAVDPREGSLCVEMRIRFYKDGAMSKLLDR 432
            +  G  VVQR YNA  VR++ +         EPP       G  A +K                 T     +VVPA +  EG LC+EMRIR Y DGAMSKLL++
Sbjct: 1148 QEEGKGVVQRPYNAFAVRLLDV---------EPPTPG----GRVAWSK-----------------TSAKLPKVVPAEETTEGVLCIEMRIRMYHDGAMSKLLEK 1221
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BLAST of mRNA_A-nodosum_M_contig977.6.1 vs. uniprot
Match: D8LFE6_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE6_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 2.580e-5
Identity = 38/97 (39.18%), Postives = 49/97 (50.52%), Query Frame = 1 
Query:  139 VVQRSYNATVVRVIRLDASGGAPSPEPPCTSAASPGNAARAKGDPAVGSGIIDSGTEVITKEGKVRVVPAVDPREGSLCVEMRIRFYKDGAMSKLLD 429
            VVQRSYNA  VRV   D +G                        P    G +  G++    +G ++VVPA + + G LC+EMRIR Y DGAMSKLL+
Sbjct: 1231 VVQRSYNAYAVRV--QDTNGSL---------------------TPGAIMGGLSQGSD--KGQGTLKVVPAGETKAGVLCIEMRIRLYTDGAMSKLLE 1302
[Close]
BLAST of mRNA_A-nodosum_M_contig977.6.1 vs. uniprot
Match: D7G7J1_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J1_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 4.750e-5
Identity = 40/104 (38.46%), Postives = 50/104 (48.08%), Query Frame = 1 
Query:  121 RSNGDSVVQRSYNATVVRVIRLDASGGAPSPEPPCTSAASPGNAARAKGDPAVGSGIIDSGTEVITKEGKVRVVPAVDPREGSLCVEMRIRFYKDGAMSKLLDR 432
            +  G  VVQR+YNA  VR++ +         EPP       G  A  KG                 K  K+  VPA +  EG LC+EMRIR Y DGAMSKLL++
Sbjct: 1154 QEEGKGVVQRAYNAFAVRLLDV---------EPPTPG----GRVAWTKG---------------FAKLPKI--VPAGETTEGILCIEMRIRMYHDGAMSKLLEK 1227
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig977.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FX04_ECTSI2.650e-2144.93Dopamine beta-monooxygenase, putative n=1 Tax=Ecto... [more]
A0A6H5JBL8_9PHAE4.430e-2045.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5R1_9PHAE7.200e-665.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7J2_ECTSI2.570e-537.50Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LFE6_ECTSI2.580e-539.18Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G7J1_ECTSI4.750e-538.46Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig977contigA-nodosum_M_contig977:75520..76817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FX04
PFAMsCyt-b5,Cytochrom_B561,DOMON,NAD_binding_1
Model size434
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.34e-22
EggNOG OGs2D0T2@1|root,2SFBV@2759|Eukaryota
DescriptionDOMON domain
Cds size432
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870505.5358899-CDS-A-nodosum_M_contig977:75519..755941680870505.5358899-CDS-A-nodosum_M_contig977:75519..75594Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig977 75520..75594 +
1680870505.5509164-CDS-A-nodosum_M_contig977:76171..762311680870505.5509164-CDS-A-nodosum_M_contig977:76171..76231Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig977 76172..76231 +
1680870505.5618153-CDS-A-nodosum_M_contig977:76520..768171680870505.5618153-CDS-A-nodosum_M_contig977:76520..76817Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig977 76521..76817 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig977.6.1prot_A-nodosum_M_contig977.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig977 75520..76817 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig977.6.1

>prot_A-nodosum_M_contig977.6.1 ID=prot_A-nodosum_M_contig977.6.1|Name=mRNA_A-nodosum_M_contig977.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=144bp
MDKGKEEDRAVYRYVFACPGEARVLAQAATGVCYFNMRAVRSNGDSVVQR
SYNATVVRVIRLDASGGAPSPEPPCTSAASPGNAARAKGDPAVGSGIIDS
GTEVITKEGKVRVVPAVDPREGSLCVEMRIRFYKDGAMSKLLDR
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mRNA from alignment at A-nodosum_M_contig977:75520..76817+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig977.6.1 ID=mRNA_A-nodosum_M_contig977.6.1|Name=mRNA_A-nodosum_M_contig977.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1298bp|location=Sequence derived from alignment at A-nodosum_M_contig977:75520..76817+ (Ascophyllum nodosum dioecious)
ATGGACAAAGGCAAGGAGGAGGACCGGGCAGTCTACAGATACGTGTTCGC
ATGTCCTGGGGAGGCAAGAGTGCTGGTGAGTGCCCCCCGCCCCCCTTCCC
CACCTCGAGGTCAACGTCCAGAAGAGTGAGTGTTACTGCTGTGTTTGCGA
TCCAATCCAATACCAGCCTCGTATGTTTGTCTTCTCTTTTGTGCCCAGTC
GTTCCGTATTACTTTACGGGGGATTTTGTATTCGACGTTTGGCGTGGAGC
CGTGCATTCTTTTTTTAGTGTCGTCTCTTGAGAACGGATGCCGCCGGGGA
AAACAAGCAAGAAGCCATTGGTGAGAACGCTGCCTTTCCGTTCTGCAGTA
GAGTGTTCACGGCGTTCAAAAACAACACCTGGGAAATTTTCTGAAGGAGA
GTGCGCGCAACGCGCCTCGTGATCTGTCTTACGGAGGCGTCTTTCGCCAA
CACCTCCCATGAATCACCGCTCCTCTGCGATGCGTATATACTAGCCCGTT
TCTTTGTTGACGCGTCAAATCCGTGCAACGAGTAATACTCATCGAGGCGG
AGTTCCATGCTCATCCATGCAACATTTTAAGCACCCCGCCGAGGAAGCAC
TTTCCACCTCAGTCACAATCAACTCCGTGCGGGCCCTCGCCGCTGTTCGC
AGGCTCAGGCCGCCACGGGAGTGTGCTATTTCAACATGCGCGCTGTCCGC
AGCAACGGCGATGTGAGTGGGTAGCAACACTTTAAAGAAATCCTCCTTCC
TTGGTGTGGTGTACGTGCGTCGAGGCGCGGTTCCTTAAGCAGAAATAGCG
AGCAGCAGCATCAGCGGTCGCTCGCTCACTCGGCGTAGGCGACGGCGACG
CAAACGAAAATACCTTTAATGTTTGCTTCTCGACGACGCCTGCCTTTTTC
TAGGCATGATACTATGTGCATAGGCTTACCCTGTGTTTTTTCTCGCGCTT
CTCCTGCGGGGGCTTACGGTTTGTCAACCCTGCGTTGCGTCGTGCGTATA
GAGCGTAGTTCAGCGTTCGTACAACGCCACGGTGGTCAGGGTTATTAGGC
TCGACGCCTCCGGTGGTGCACCCTCGCCTGAGCCTCCGTGCACGTCCGCG
GCGAGTCCCGGCAATGCCGCTCGTGCCAAGGGTGATCCTGCCGTCGGTAG
CGGCATCATTGACAGCGGCACCGAGGTGATCACTAAGGAAGGCAAGGTGA
GGGTCGTGCCGGCCGTGGATCCGCGGGAGGGATCTCTGTGCGTAGAGATG
CGGATCAGGTTCTACAAGGACGGTGCCATGAGCAAGCTTTTGGACCGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig977:75520..76817+

>mRNA_A-nodosum_M_contig977.6.1 ID=mRNA_A-nodosum_M_contig977.6.1|Name=mRNA_A-nodosum_M_contig977.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at A-nodosum_M_contig977:75520..76817+ (Ascophyllum nodosum dioecious)
ATGGACAAAGGCAAGGAGGAGGACCGGGCAGTCTACAGATACGTGTTCGC
ATGTCCTGGGGAGGCAAGAGTGCTGGCTCAGGCCGCCACGGGAGTGTGCT
ATTTCAACATGCGCGCTGTCCGCAGCAACGGCGATAGCGTAGTTCAGCGT
TCGTACAACGCCACGGTGGTCAGGGTTATTAGGCTCGACGCCTCCGGTGG
TGCACCCTCGCCTGAGCCTCCGTGCACGTCCGCGGCGAGTCCCGGCAATG
CCGCTCGTGCCAAGGGTGATCCTGCCGTCGGTAGCGGCATCATTGACAGC
GGCACCGAGGTGATCACTAAGGAAGGCAAGGTGAGGGTCGTGCCGGCCGT
GGATCCGCGGGAGGGATCTCTGTGCGTAGAGATGCGGATCAGGTTCTACA
AGGACGGTGCCATGAGCAAGCTTTTGGACCGG
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