mRNA_A-nodosum_M_contig977.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig977.5.1
Unique NamemRNA_A-nodosum_M_contig977.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig977.5.1 vs. uniprot
Match: D7FX04_ECTSI (Dopamine beta-monooxygenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX04_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 2.900e-36
Identity = 69/142 (48.59%), Postives = 98/142 (69.01%), Query Frame = 1 
Query:    4 NKHLHIWAGHFAFLAGAVQCYHGVKLVSAKDSLHFSAIEDMVEFEVGNFGVVYNYVMPIWFGVIGITFVFLETRKQLKRYSRKDAAMECCVYEFKNKGFVAQGRQVDDGDGESEHGLMPRTQALPLYTMDEFNYKVLNGMSW 429
            NK  HI+AG FA+LAG VQCY G++LV++ D L FSA  D ++ ++G+FG VY+Y  P WFG+I + F++LETRKQ +RY +K +A      +  N+G+  +G +  DG+      LMPRT+ LP+Y++ EFN KVLNG SW
Sbjct:  340 NKFFHIYAGRFAYLAGVVQCYRGLELVASDDQLIFSA-GDGLDLQLGSFGFVYDYGFPAWFGLIALIFLYLETRKQYRRYFKKGSATVLGCLQVVNEGY--KGDEGADGEQPKRERLMPRTEDLPIYSVAEFNDKVLNGQSW 478
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BLAST of mRNA_A-nodosum_M_contig977.5.1 vs. uniprot
Match: A0A6H5JBL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL8_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 1.030e-35
Identity = 69/142 (48.59%), Postives = 96/142 (67.61%), Query Frame = 1 
Query:    4 NKHLHIWAGHFAFLAGAVQCYHGVKLVSAKDSLHFSAIEDMVEFEVGNFGVVYNYVMPIWFGVIGITFVFLETRKQLKRYSRKDAAMECCVYEFKNKGFVAQGRQVDDGDGESEHGLMPRTQALPLYTMDEFNYKVLNGMSW 429
            NK  HI+AG FA+LAG VQCY G++LV++ D L FSA  D ++ ++G+FG+VY Y  P WF +I + F++LET KQ +RY +K +A      E  N+G+  +G   DDG+      LMPRT+ LP+Y++ EFN KVLNG SW
Sbjct: 1030 NKFFHIYAGRFAYLAGVVQCYRGLELVASDDQLIFSA-GDGLDLQLGSFGLVYEYGFPAWFALIALIFLYLETSKQFRRYFKKGSANVLGCLEVVNEGY--KGDDGDDGEQLKNERLMPRTEDLPIYSVAEFNDKVLNGQSW 1168
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BLAST of mRNA_A-nodosum_M_contig977.5.1 vs. uniprot
Match: D7FQW8_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW8_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 4.750e-35
Identity = 71/135 (52.59%), Postives = 95/135 (70.37%), Query Frame = 1 
Query:    4 NKHLHIWAGHFAFLAGAVQCYHGVKLVSAKDSLHFSAIEDMVEFEVGNFGVVYNYVMPIWFGVIGITFVFLETRKQLKRYSRKDAAMECCVYEFKNKGFVAQGRQVDDGDGESEHGLMPRTQALPLYTMDEFNYK 408
            NKH HIWAG FA+LAG VQCY G++LVS+ D+L  SA  D ++ E+G+FGV  +   PIWF ++G+ F+ LETRKQ +RY RK AA  C   E  N+ +   G + DDG+ + E  L+PRT+ALPLYT++EFN K
Sbjct:  681 NKHFHIWAGRFAYLAGVVQCYRGLELVSSDDNLVLSA-GDGLDLEIGSFGVFRDVGFPIWFALVGLGFLVLETRKQYRRYFRKGAANLCGCVELINEEYT--GEKGDDGE-KVEDRLVPRTEALPLYTVEEFNDK 811
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BLAST of mRNA_A-nodosum_M_contig977.5.1 vs. uniprot
Match: D8LFE6_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE6_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 9.380e-33
Identity = 66/142 (46.48%), Postives = 95/142 (66.90%), Query Frame = 1 
Query:    4 NKHLHIWAGHFAFLAGAVQCYHGVKLVSAKDSLHFSAIEDMVEFEVGNFGVVYNYVMPIWFGVIGITFVFLETRKQLKRYSRKDAAMECCVYEFKNKGFVAQGRQVDDGDGESEHGLMPRTQALPLYTMDEFNYKVLNGMSW 429
            NK  HI+AG FA+LAG VQCY G++LV++ D L FSA  D ++ ++G+FG VY  V P W G+I + F++LETRKQ +RY +K +A      E  N+    +G   ++G  + +  L+PRT+ LP+Y++ EFN KVLNG SW
Sbjct:  857 NKFFHIYAGRFAYLAGVVQCYRGLELVASDDKLIFSA-GDGLDLQLGSFGFVYEKVFPAWLGLIALIFLYLETRKQYRRYFKKGSAKILGCVEIINERHDGKGDADENGVPQYQR-LVPRTEDLPIYSLAEFNEKVLNGQSW 996
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BLAST of mRNA_A-nodosum_M_contig977.5.1 vs. uniprot
Match: D8LB74_ECTSI (Delta-9 desaturase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB74_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 7.030e-8
Identity = 34/82 (41.46%), Postives = 41/82 (50.00%), Query Frame = 1 
Query:  184 FGVIGITFVFLETRKQLKRYSRKDAAMECCVYEFKNKGFVAQGRQVDDGDGESEHGLMPRTQALPLYTMDEFNYKVLNGMSW 429
            F  + I F F            K AA  CC  E  N+ F  +  Q      E ++ LMPRT+ LP+YTM EFN KVLNG SW
Sbjct:   67 FSAVDINFTFFT----------KGAARLCCFVELVNEKFTDEAIQQ-----EVDNRLMPRTEELPIYTMQEFNDKVLNGRSW 133
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig977.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FX04_ECTSI2.900e-3648.59Dopamine beta-monooxygenase, putative n=1 Tax=Ecto... [more]
A0A6H5JBL8_9PHAE1.030e-3548.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQW8_ECTSI4.750e-3552.59Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LFE6_ECTSI9.380e-3346.48Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LB74_ECTSI7.030e-841.46Delta-9 desaturase n=1 Tax=Ectocarpus siliculosus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig977contigA-nodosum_M_contig977:71087..73050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FX04
PFAMsCyt-b5,Cytochrom_B561,DOMON,NAD_binding_1
Model size432
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons4
Evalue4.76e-37
EggNOG OGs2D0T2@1|root,2SFBV@2759|Eukaryota
DescriptionDOMON domain
Cds size429
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870505.4570432-CDS-A-nodosum_M_contig977:71086..712241680870505.4570432-CDS-A-nodosum_M_contig977:71086..71224Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig977 71087..71224 +
1680870505.469843-CDS-A-nodosum_M_contig977:71503..716051680870505.469843-CDS-A-nodosum_M_contig977:71503..71605Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig977 71504..71605 +
1680870505.487354-CDS-A-nodosum_M_contig977:72044..722121680870505.487354-CDS-A-nodosum_M_contig977:72044..72212Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig977 72045..72212 +
1680870505.4995224-CDS-A-nodosum_M_contig977:73027..730481680870505.4995224-CDS-A-nodosum_M_contig977:73027..73048Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig977 73028..73048 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig977.5.1prot_A-nodosum_M_contig977.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig977 71087..73048 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig977.5.1

>prot_A-nodosum_M_contig977.5.1 ID=prot_A-nodosum_M_contig977.5.1|Name=mRNA_A-nodosum_M_contig977.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=143bp
VNKHLHIWAGHFAFLAGAVQCYHGVKLVSAKDSLHFSAIEDMVEFEVGNF
GVVYNYVMPIWFGVIGITFVFLETRKQLKRYSRKDAAMECCVYEFKNKGF
VAQGRQVDDGDGESEHGLMPRTQALPLYTMDEFNYKVLNGMSW
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mRNA from alignment at A-nodosum_M_contig977:71087..73050+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig977.5.1 ID=mRNA_A-nodosum_M_contig977.5.1|Name=mRNA_A-nodosum_M_contig977.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1964bp|location=Sequence derived from alignment at A-nodosum_M_contig977:71087..73050+ (Ascophyllum nodosum dioecious)
GTGAACAAGCACCTCCACATCTGGGCCGGACACTTCGCGTTCCTCGCCGG
AGCGGTCCAGTGTTATCACGGTGTTAAGCTCGTCTCCGCGAAAGACAGCC
TACACTTTTCCGCCATCGAAGACATGGTGGAGTTTGAGGTCGGCAACCAA
AAACGCGCCTTTGTCCCTCGAAATGTCCCCTGCAAACACAAGCGCTCGCC
TACCCCCAAGATGAGCGTGTCGCCTGAGTTGTGCGTACAGAAATACACAC
GCGGTTTTACGTGTGTGGATTCATGCCCTGCCTTCCTTAGCTAGGACCAC
TTTTCAAGACACTTCCGACCGCACTCCTGTTTACTCGTCAATATTGATAA
CGGCATAATAGAAAGCGGAAAGCAAAAAAAGACACTATTAATACTGCTGT
GGTTTCTATCGTGGCAGGTGGGAAACTTCGGGGTCGTGTACAACTATGTG
ATGCCTATCTGGTTCGGCGTCATTGGGATCACTTTCGTGTTCTTGGAGAC
CAGGAAGCAGCTCAAGAGGGTGAGGGGCTGCTCGCGATCGCCACGGTCGA
TCATGAGGAATGAATCCTTTATGGCGTTGTCTTGGAGTGAAATGGGGTCG
AATAGAGGTCGATCGAATCGACGCGCATGAAACCGGCCGCGCCCGTTTGT
TGAGGCTCGCGTTGAGAAGATGCTTCGATCGTTCTCGACGGAGCCGATTG
ATTAATCCTCGTAAAGGAGTGTCAGCCCTGAGGTTATTTTCAATTTATCG
CCGCCTGCCTCCTCAAAATGACGTCACGGCCGCCGCTTTCACTGTTGTGT
TAGTACGTAACCAAGGCCGTCTACTTCCACTCTGGCAGGGTATTACCTGA
AAATCGCCTTTTGATTGGGGGTTTTGACCGAGTTGGGGTTGCAGACTGTG
AGTGGCCTATTTTTTTTTCATGTTCATGTACCGTATCCCTCTATTCGACG
GTGAGCAGTACAGCAGAAAGGACGCGGCCATGGAATGCTGCGTTTACGAG
TTCAAAAACAAGGGATTCGTCGCGCAAGGGCGACAGGTAGACGACGGGGA
CGGGGAGTCAGAGCACGGTCTGATGCCCCGCACGCAGGCTCTGCCGCTTT
ATACCATGGACGAGTTCAATTACAAGGTGACTTTCTCTCACTGGTTGTCG
TTGTTATGCATGTTTGTGTATTACAAGCGCGTTTGTGGGTATTCGGGGGT
GTAAGTATTTCATTTTGAATCTCCGGACGAATGGCGTCACAGCAGGGTTT
GTTTGTTTGTTTGGTGGAGGGGAGTGTTATTACCTCTATTGCTGGTGCCC
CTGCTTCTAATTCACACACACAGACAAGTATCATTGATCCCCCCTTGGGA
GGATCAATGCGAGGGGCATAGAATGACTAGGATGACAAGGCCGGATTGCG
CGGTCATGTGCAATTTAATAAATACACACACACACACACCATAGAATGAC
TAGGATGACAGGGCCGGATTGCGTGGTTATGTGCAATTTAATAAATATAC
ACACACACACACACACACACAACCCCCTCGGGAGGATCAATGCGAGTGGC
ATAGAATGATTAGGATGACAGGGCCGGATTGCGCGGTTATGTGCAATATA
AATACACACACACACACGACATGGGTGGAAAGCTAAAAAAAATGTAGAAA
AGAAAGGGTTGGTTCAGTAGCTGCCAACTCGGATAGCCCGGGGAGCAACT
AGGAAGCAGGGGGGGGAGCACAAGGTGCTCAGGGCTCAAGTAAGATTTAT
ACAAGTAGAGAGAGTGTGTCCCCTCTGTCGCGTTTGATCAGAGGTTTTCG
TAACAAGTATCATTGATCCCCCCTTGGGAGGATCAACGCGAGTGGCATAG
AATGACTAGGATGACAAGGCCGGATTGCGCGGTCATGTGCAATTTAATAA
ATACACACACACACACACACACACAACACACATACACGTAGGTATTGAAC
GGGATGAGCTGGGT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig977:71087..73050+

>mRNA_A-nodosum_M_contig977.5.1 ID=mRNA_A-nodosum_M_contig977.5.1|Name=mRNA_A-nodosum_M_contig977.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=429bp|location=Sequence derived from alignment at A-nodosum_M_contig977:71087..73050+ (Ascophyllum nodosum dioecious)
GTGAACAAGCACCTCCACATCTGGGCCGGACACTTCGCGTTCCTCGCCGG
AGCGGTCCAGTGTTATCACGGTGTTAAGCTCGTCTCCGCGAAAGACAGCC
TACACTTTTCCGCCATCGAAGACATGGTGGAGTTTGAGGTGGGAAACTTC
GGGGTCGTGTACAACTATGTGATGCCTATCTGGTTCGGCGTCATTGGGAT
CACTTTCGTGTTCTTGGAGACCAGGAAGCAGCTCAAGAGGTACAGCAGAA
AGGACGCGGCCATGGAATGCTGCGTTTACGAGTTCAAAAACAAGGGATTC
GTCGCGCAAGGGCGACAGGTAGACGACGGGGACGGGGAGTCAGAGCACGG
TCTGATGCCCCGCACGCAGGCTCTGCCGCTTTATACCATGGACGAGTTCA
ATTACAAGGTATTGAACGGGATGAGCTGG
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