mRNA_A-nodosum_M_contig977.3.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig977.3.2
Unique NamemRNA_A-nodosum_M_contig977.3.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig977.3.2 vs. uniprot
Match: D7FQW8_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW8_ECTSI)

HSP 1 Score: 259 bits (661), Expect = 3.030e-72
Identity = 134/249 (53.82%), Postives = 169/249 (67.87%), Query Frame = 2
Query:  707 RNRRPRRL----TEYNSDLNPGADVLATTVGVAALYAAIPPTVRIMDEDYVPADEDGIELTEAAEDIAGLFERNSVGSVIRGAVFSSSLAVDTHFSSAVSTTSPLFKLPVDAIQRGRDHGVPTYNDAREAYGLSRATSFSDVTADTNVEALLEEAYGGDIGLLDALTGALAEGSNMSSSSILGDLLQEVWKDQLYRSIVGDRLFHQHYVPTTDVENLTLRDLIEHTLNVTDLPLSVFTTPEITVCYSNC 1441
            R+RR RRL     +YN+ +N  AD    T G AA  +A+P TVRI+ + YV  D+D +EL  A+ D+AG+F RN+V  V+RGAV S +L VD ++S  VS  SPLFKLPVD +QRGRDHG+P+YN AREA+GL  AT+F DV+ D ++ + L +AYGGDI  LDA TGALAEG++ S+  +LGDLL   W DQL RSI GDR +H H     +V N TL D+I    N TDLPLSVF  P ITVC   C
Sbjct:  202 RSRRGRRLYVSSNDYNTTINAAADAFTVTAGGAAFESALPGTVRIVSDGYVSTDDDNVELNVASADMAGIFARNNVADVLRGAVLSPALTVDAYYSPVVSNLSPLFKLPVDGVQRGRDHGLPSYNGAREAFGLDPATTFEDVSDDADLASRLSDAYGGDINGLDAFTGALAEGTHSSTGGVLGDLLVAAWSDQLTRSIAGDRFYHLHARYMENVANTTLMDVIGRVTNATDLPLSVFQAPSITVCDGGC 450          
BLAST of mRNA_A-nodosum_M_contig977.3.2 vs. uniprot
Match: D7G7J1_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J1_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 1.370e-70
Identity = 133/247 (53.85%), Postives = 167/247 (67.61%), Query Frame = 2
Query:  737 YNSDLNPGADVLATTVGVAALYAAIPPTVRIMDEDYVPADEDGIELTEAAEDIAGLFERNSVGSVIRGAVFSSSLAVDTHFSSAVSTTSPLFKLPVDAIQRGRDHGVPTYNDAREAYGLSRATSFSDVTADTNVEALLEEAYGGDIGLLDALTGALAEGSNMSSSSILGDLLQEVWKDQLYRSIVGDRLFHQHYVPTTDVENLTLRDLIEHTLNVTDLPLSVFTTPEITVCYSNCSTTESSTVSLSD 1477
            YN  ++P ADV  T    AA  +A+P T+RI+ E YV  D D +ELT AAEDI GLFE +++G ++RGAV S ++AV  H++SAVS  SPLFKLPVD +QRGRDHGVP+YND R AYGL  AT FSDV++D +V  LL+ AYGG+I  LDA TGALAE    S   I G LL   W DQLYRS+ GDR  H H  P  +V  +++  L+  TL +T LP S FT PE+TVC   C  T +S VSL++
Sbjct:  249 YNDTVDPSADVFVTVAMTAAFESALPSTLRIVSEGYVATDYDHLELTVAAEDITGLFEHSAIGDILRGAVLSPAMAVGAHYASAVSNASPLFKLPVDMVQRGRDHGVPSYNDVRGAYGLPEATDFSDVSSDGDVVQLLDAAYGGEIDNLDACTGALAEDKEASLGGIFGYLLHTAWVDQLYRSLFGDRYHHLHSRPIENVSLVSISQLLNRTLGLTALPESGFTVPEVTVCTGQCEATGTSGVSLAE 495          
BLAST of mRNA_A-nodosum_M_contig977.3.2 vs. uniprot
Match: D7G7J2_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J2_ECTSI)

HSP 1 Score: 250 bits (639), Expect = 3.970e-69
Identity = 135/247 (54.66%), Postives = 164/247 (66.40%), Query Frame = 2
Query:  737 YNSDLNPGADVLATTVGVAALYAAIPPTVRIMDEDYVPADEDGIELTEAAEDIAGLFERNSVGSVIRGAVFSSSLAVDTHFSSAVSTTSPLFKLPVDAIQRGRDHGVPTYNDAREAYGLSRATSFSDVTADTNVEALLEEAYGGDIGLLDALTGALAEGSNMSSSSILGDLLQEVWKDQLYRSIVGDRLFHQHYVPTTDVENLTLRDLIEHTLNVTDLPLSVFTTPEITVCYSNCSTTESSTVSLSD 1477
            Y+  LNP ADV  T    AA  +A+P T+RI+ E YV  D D +ELT AAEDI GLFE +++G ++RGAV S ++AV  HF+SAVS  SPLFKLPVD +QR RDHGVP+YND REAY LS+AT+FSDV+AD +V  LL  AYGG+I  LDA  GALAE    S     GDLL   W +QLYR+  GDR  H H  P  +V   ++  LI  TL VTDLP S FT PE+TVC   C     S VSL++
Sbjct:  249 YDDLLNPSADVFVTVAMTAAFESALPSTLRIVSEGYVATDYDHLELTVAAEDITGLFEHSAIGDILRGAVLSPAMAVWPHFASAVSNASPLFKLPVDMVQRARDHGVPSYNDVREAYELSKATAFSDVSADDDVVQLLYAAYGGEIENLDACVGALAEEKEASLGGNFGDLLHTAWVNQLYRTFFGDRYHHLHSRPIENVSLASISGLINQTLGVTDLPASGFTVPEVTVCTGECEAAGISGVSLAE 495          
BLAST of mRNA_A-nodosum_M_contig977.3.2 vs. uniprot
Match: A0A6H5JQ31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ31_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 2.590e-65
Identity = 128/247 (51.82%), Postives = 160/247 (64.78%), Query Frame = 2
Query:  737 YNSDLNPGADVLATTVGVAALYAAIPPTVRIMDEDYVPADEDGIELTEAAEDIAGLFERNSVGSVIRGAVFSSSLAVDTHFSSAVSTTSPLFKLPVDAIQRGRDHGVPTYNDAREAYGLSRATSFSDVTADTNVEALLEEAYGGDIGLLDALTGALAEGSNMSSSSILGDLLQEVWKDQLYRSIVGDRLFHQHYVPTTDVENLTLRDLIEHTLNVTDLPLSVFTTPEITVCYSNCSTTESSTVSLSD 1477
            Y+  ++P ADV  T    AA  +A+P T+RI+ E YV  D D +ELT AA+DI GLFE +++G ++RGAV S ++AV  H++SAVS  SPLFKLPVD +QR RDHGVP+YND REAY L +AT+ SDV+AD +V  LL  AYGG+I  LDA  GALAE    S     GDLL   W  QLYR+  GDR  H H  P  +V   ++  LI  TL VTDLP S F  PE+TVC   C     S VSL++
Sbjct:  234 YDDTVDPSADVFVTVAMTAAFESALPSTLRIVGEGYVATDYDHLELTVAADDITGLFEHSTIGDILRGAVLSPAMAVGAHYASAVSNASPLFKLPVDMVQRARDHGVPSYNDVREAYDLPKATAMSDVSADDDVVELLYAAYGGEIENLDACVGALAEEKEASLGGNFGDLLHTAWVYQLYRTFFGDRYHHLHSRPIENVSLASISGLINQTLGVTDLPESGFMVPEVTVCTGECEAAGISGVSLAE 480          
BLAST of mRNA_A-nodosum_M_contig977.3.2 vs. uniprot
Match: A0A6H5JBZ5_9PHAE (DOMON domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBZ5_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 1.450e-59
Identity = 109/195 (55.90%), Postives = 132/195 (67.69%), Query Frame = 2
Query:  893 IAGLFERNSVGSVIRGAVFSSSLAVDTHFSSAVSTTSPLFKLPVDAIQRGRDHGVPTYNDAREAYGLSRATSFSDVTADTNVEALLEEAYGGDIGLLDALTGALAEGSNMSSSSILGDLLQEVWKDQLYRSIVGDRLFHQHYVPTTDVENLTLRDLIEHTLNVTDLPLSVFTTPEITVCYSNCSTTESSTVSLSD 1477
            +AG+F RN V  V+RGAV S +L VD ++S  VS  SPLFKLPVD +QRGRDHG+P+YN AREAYGL  AT+F DV+ D ++ + L +AYGGDI  LDA TGALAEG++ S+  +LGDLL   W DQL RSI GDR +H H     +V N TL D+I    N TDLPLSVF  P ITVC   C+        LSD
Sbjct:    1 MAGIFARNDVADVLRGAVLSPALTVDAYYSPVVSNLSPLFKLPVDGVQRGRDHGLPSYNAAREAYGLDPATTFEDVSDDADLASRLSDAYGGDIDGLDAFTGALAEGTDSSTGGVLGDLLVAAWSDQLTRSIAGDRFYHLHVRNMENVANTTLMDVIGRVTNATDLPLSVFQAPSITVCDGGCAGDGDGVAVLSD 195          
BLAST of mRNA_A-nodosum_M_contig977.3.2 vs. uniprot
Match: A0A6H5JBL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL8_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 3.560e-59
Identity = 123/271 (45.39%), Postives = 158/271 (58.30%), Query Frame = 2
Query:  731 TEYNSDLNPGADVLATTVGVAALYAAIPPTVRIMDEDYVPADEDGIELTEA--AEDIAGLFERNSVGSVIRGAVFSSSLAVDTHFSSAVSTTSPLFKLPVDAIQRGRDHGVPTYNDAREAYGLSRATSFSDVT--------------------ADTNVEALLEEAYGGDIGLLDALTGALAEGSNMSSSSILGDLLQEVWKDQLYRSIVGDRLFHQHYVPTTDVENLTLRDLIEHTLNVTDLPLSVFTTPEITVCYSNCSTTESSTVSLSD 1477
            T+Y+ ++NPGAD    T G AA  +A+P TVR++ E Y     D IEL  A  A+ +   F    V  V+RGAV S   A DTH+++AVS  SPLFKLPVD++QRGRDHG+PTYNDAR A+GLS AT+F+DVT                    AD  V  +L  AYGG++  LDA+TGALAE +  SS    G+LL   W +Q+YR+  GDR  H H     D    T+ DLI  T   TD+PLS F    + VC ++CS+   S   LSD
Sbjct:  432 TDYDENINPGADTFTLTAGAAAFESALPSTVRVVGEGYESTRYDNIELAAAVGADSLVSFFNNVKVVDVLRGAVLSPVYAADTHYTAAVSNGSPLFKLPVDSVQRGRDHGLPTYNDARAAFGLSEATTFTDVTTSXXXXXXXXXXXXXXXGSDADEEVADILSTAYGGNVSTLDAVTGALAEPTMASSGGFFGELLHAAWLEQMYRAFQGDRFHHLHSRDIEDASLTTISDLINRTTGATDIPLSAFVAATVEVCGADCSSIGVSEADLSD 702          
BLAST of mRNA_A-nodosum_M_contig977.3.2 vs. uniprot
Match: D8LB73_ECTSI (Peroxinectin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB73_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 2.730e-54
Identity = 115/248 (46.37%), Postives = 160/248 (64.52%), Query Frame = 2
Query:  737 YNSDLNPGADVLATTVGVAALYAAIPPTVRIMDEDYVPADEDGIELTEAAEDIAGLFER-NSVGSVIRGAVFSSSLAVDTHFSSAVSTTSPLFKLPVDAIQRGRDHGVPTYNDAREAYGLSRATSFSDVTADTNVEALLEEAYGGDIGLLDALTGALAEGSNMSSSSILGDLLQEVWKDQLYRSIVGDRLFHQHYVPTTDVENLTLRDLIEHTLNVTDLPLSVFTTPEITVCYSNCSTTESSTVSLSD 1477
            Y++  + G DV   TV   ALY+A+P TV ++D+ +    E  +EL  A  D+AGL  R   +  +IRGA ++ +  +D  F + VS +SPLF  PV+AIQRGRDHGVP+YN AREAY LSR  SF+++T+DT V+A L  AYG D+ LLDA TGALAE +   S    G LL+ V+ +QLYR+IVGDR  H H     D    TL++LI +   V+ +PL  F+ P++ V  SNCS+TE + V+L++
Sbjct:  318 YDAGTDAGTDVFFATVAAPALYSALPSTVGLLDDGFEVMAEHEVELATANADLAGLVTRIGGIEPIIRGASYARARGIDASFVAEVSVSSPLFNFPVEAIQRGRDHGVPSYNSAREAYALSRFDSFAEITSDTTVQATLSTAYGNDVDLLDAYTGALAE-TEEGSGLFAGPLLRMVFLEQLYRAIVGDRHHHSHSTQNEDAALSTLKNLILNNSLVSSIPLDSFSAPDL-VTSSNCSSTEMNEVTLAE 563          
BLAST of mRNA_A-nodosum_M_contig977.3.2 vs. uniprot
Match: D7FX03_ECTSI (Peroxinectin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX03_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 1.400e-46
Identity = 99/210 (47.14%), Postives = 128/210 (60.95%), Query Frame = 2
Query:  731 TEYNSDLNPGADVLATTVGVAALYAAIPPTVRIMDEDYVPADEDGIELTEA--AEDIAGLFERNSVGSVIRGAVFSSSLAVDTHFSSAVSTTSPLFKLPVDAIQRGRDHGVPTYNDAREAYGLSRATSFSDVT----------------------ADTNVEALLEEAYGGDIGLLDALTGALAEGSNMSSSSILGDLLQEVWKDQLYRSI 1288
            T+Y+ + NPGAD    T GVAA  +A+P TVR++ E Y     D IEL  A  A+ +   F    V  V+RGAV S   A DTH+++AVS  SPLFKLPVD++QRGRDHG+PTYNDAR A+GLS AT+F+DVT                      AD  V  +L  AYGG++  LDA+TGALAE +  SS  + G+LL   W +Q+YR +
Sbjct:  401 TDYDENTNPGADTFTLTAGVAAFESALPSTVRVVGEGYESTRYDNIELAAAVGADGLVSFFNNVKVVDVLRGAVLSPVYAADTHYTAAVSNGSPLFKLPVDSVQRGRDHGLPTYNDARAAFGLSEATTFTDVTTXXXXXXXXXXXXXXXXXXGSDADEEVADILSTAYGGNVSTLDAVTGALAEPTMASSGGVFGELLHAAWLEQMYRCV 610          
BLAST of mRNA_A-nodosum_M_contig977.3.2 vs. uniprot
Match: D8LFE6_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE6_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 6.160e-46
Identity = 106/232 (45.69%), Postives = 132/232 (56.90%), Query Frame = 2
Query:  836 EDYVPADEDGIELTEA--AEDIAGLFERNSVGSVIRGAVFSSSLAVDTHFSSAVSTTSPLFKLPVDAIQRGRDHGVPTYNDAREAYGLSRATSFSDVT----------------ADTNVEALLEEAYGGDIGLLDALTGALAEGSNMSSSSILGDLLQEVWKDQLYRSIVGDRLFHQHYVPTTDVENLTLRDLIEHTLNVTDLPLSVFTTPEITVCYSNCSTTESSTVSLSD 1477
            E Y     D  EL  A  A+ +   F+   V  V+RGAV S  LA +++F++AVS  SPLFKLPVDA+QRGRDH +PTYNDAR+A+GL  AT+FSDVT                +D  V  +L  AYGGDI  LDA+TGALAE    SS    G+LL   W DQ+YR+  GDR  H H     DV   T+ DL+  T    DLPLS F    + VC ++C+      V LSD
Sbjct:  356 EGYESTRYDNTELAAAVGADSLVSFFDSVEVADVLRGAVLSPVLAANSYFTTAVSNGSPLFKLPVDAVQRGRDHALPTYNDARQAFGLDVATTFSDVTTSXXXXXXXXXXXXXDSDELVATILSAAYGGDISTLDAVTGALAEPMLTSSGGFFGELLHAAWMDQMYRTFRGDRFHHLHSRSIEDVSLTTISDLLNRTTGAADLPLSAFAAAGVEVCGADCTAVGEEDVELSD 587          
BLAST of mRNA_A-nodosum_M_contig977.3.2 vs. uniprot
Match: A0A6H5K9L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9L2_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 7.280e-42
Identity = 114/299 (38.13%), Postives = 159/299 (53.18%), Query Frame = 2
Query:  716 RPRRLTE----YNSDLNPGADVLATTVGVAALYAAIPPTVRIMDEDYVPADEDGIELTEAAEDIAGLFER-NSVGSVIRGAVFSSSLAVDTHFSSAVSTTSPLFKLPVDAIQR-------------GRD---------------------------HGVPTYNDAREAYGLSRATSFSDVTADTNVEALLEEAYGGDIGLLDALTGALAEGSNMSSSSILGDLLQEVWKDQLYRSIVGDRLFHQHYVPTTDVENLTLRDLIEHTLNVTDLPLSVFTTPEITVCYSNCSTTESSTVSLSD 1477
            R R LT+    Y++  N G DV   TV   ALY+A+P TV ++D+ +    E  +EL  A  D+AGL  R   +  +IRGA  + +  +D  F + VS +SPLF  PV+A                G D                            GVP+YNDAREAY LSR  +F+++T+DT V+A L  AYG D+ LLDA TGALAE +   S    G LL+ V+ +QLYR+IVGDR  H H     D    TL +LI +   V+ +PL  F+ P++ V  S+CS+TE + V+L++
Sbjct:  308 RSRYLTQSNGSYDAGTNAGTDVFFATVAAPALYSALPSTVGLLDDSFEVMAEHEVELATANADLAGLVTRIGGIEPIIRGAYHARARGMDASFVAEVSVSSPLFNFPVEAAXXXXXFDSDIWFSLLGSDAAPPRPRPPLYPSSTSNSPFCLSYSPRQGVPSYNDAREAYRLSRIDTFTEITSDTTVQATLSAAYGNDVDLLDAYTGALAE-TEEGSGLFAGPLLRMVFLEQLYRAIVGDRHHHSHSTQNEDAALSTLTNLILNNSLVSSIPLDSFSAPDL-VTSSDCSSTEMNEVTLAE 604          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig977.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQW8_ECTSI3.030e-7253.82Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G7J1_ECTSI1.370e-7053.85Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G7J2_ECTSI3.970e-6954.66Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JQ31_9PHAE2.590e-6551.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBZ5_9PHAE1.450e-5955.90DOMON domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JBL8_9PHAE3.560e-5945.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB73_ECTSI2.730e-5446.37Peroxinectin n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
D7FX03_ECTSI1.400e-4647.14Peroxinectin n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
D8LFE6_ECTSI6.160e-4645.69Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5K9L2_9PHAE7.280e-4238.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig977contigA-nodosum_M_contig977:63262..67671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQW8
PFAMsAn_peroxidase,Cyt-b5,DOMON,FAD_binding_6,NAD_binding_1
Model size1483
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons9
Evalue2.57e-75
EggNOG OGsKOG2408@1|root,KOG2408@2759|Eukaryota
Descriptionperoxidase activity
Cds size978
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig977.3.2prot_A-nodosum_M_contig977.3.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig977 64868..67671 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870505.1446805-UTR-A-nodosum_M_contig977:63261..632911680870505.1446805-UTR-A-nodosum_M_contig977:63261..63291Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig977 63262..63291 +
1680870505.1579149-UTR-A-nodosum_M_contig977:63642..638161680870505.1579149-UTR-A-nodosum_M_contig977:63642..63816Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig977 63643..63816 +
1680870505.177621-UTR-A-nodosum_M_contig977:64108..642281680870505.177621-UTR-A-nodosum_M_contig977:64108..64228Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig977 64109..64228 +
1680870505.1882734-UTR-A-nodosum_M_contig977:64536..646081680870505.1882734-UTR-A-nodosum_M_contig977:64536..64608Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig977 64537..64608 +
1680870505.2012353-UTR-A-nodosum_M_contig977:64758..648671680870505.2012353-UTR-A-nodosum_M_contig977:64758..64867Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig977 64759..64867 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870505.2173214-CDS-A-nodosum_M_contig977:64867..652211680870505.2173214-CDS-A-nodosum_M_contig977:64867..65221Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig977 64868..65221 +
1680870505.2279315-CDS-A-nodosum_M_contig977:65656..658491680870505.2279315-CDS-A-nodosum_M_contig977:65656..65849Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig977 65657..65849 +
1680870505.2992804-CDS-A-nodosum_M_contig977:66141..663441680870505.2992804-CDS-A-nodosum_M_contig977:66141..66344Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig977 66142..66344 +
1680870505.3116457-CDS-A-nodosum_M_contig977:67227..673951680870505.3116457-CDS-A-nodosum_M_contig977:67227..67395Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig977 67228..67395 +
1680870505.3227472-CDS-A-nodosum_M_contig977:67611..676711680870505.3227472-CDS-A-nodosum_M_contig977:67611..67671Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig977 67612..67671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig977.3.2

>prot_A-nodosum_M_contig977.3.2 ID=prot_A-nodosum_M_contig977.3.2|Name=mRNA_A-nodosum_M_contig977.3.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=326bp
MSDSTEASTTTSIDDISPIYTDDTTSYSPISTSFDSTTTDTRARGLSSTT
TSAATKTRKDPSTTTSSRNRRPRRLTEYNSDLNPGADVLATTVGVAALYA
AIPPTVRIMDEDYVPADEDGIELTEAAEDIAGLFERNSVGSVIRGAVFSS
SLAVDTHFSSAVSTTSPLFKLPVDAIQRGRDHGVPTYNDAREAYGLSRAT
SFSDVTADTNVEALLEEAYGGDIGLLDALTGALAEGSNMSSSSILGDLLQ
EVWKDQLYRSIVGDRLFHQHYVPTTDVENLTLRDLIEHTLNVTDLPLSVF
TTPEITVCYSNCSTTESSTVSLSDE*
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mRNA from alignment at A-nodosum_M_contig977:63262..67671+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig977.3.2 ID=mRNA_A-nodosum_M_contig977.3.2|Name=mRNA_A-nodosum_M_contig977.3.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4410bp|location=Sequence derived from alignment at A-nodosum_M_contig977:63262..67671+ (Ascophyllum nodosum dioecious)
TCGGAGGACATCGAGTTTTTCCGGTCACAGGTTTGTTGACGCAGCAGACT GATCTAATGTCGCTCGTCGATGATAATGGTGCTGATGCCTCGGAGGCGGC CGAGCTGGTTGAGGTAGCGGTGCAGGGTTGGTTGATTGGGTGGGAGTCTG GGAGGATGGTGTCCGTGCCATGGACTTTATCTCCGTCCAGATTCAAAAGA ATCGGAGCATTTGGGGGGGGATTTTACGTAATATTGAAGTCATGCCGTTC CTGCCTGCCATTGGGGGCGAGGACGAACTCGGCCGAGGCAATGACTGCGA CGAACTGCTCAGTAAGGACCCCACTCAGGGGCCCTCCCTCATGCCGGCCG GTACCCGTCATTGACCCGTTCGTGAGCGAAGGCGGACGAATCCGGGGTGA GAAATCCTCTCAACCTTGCAACGTCATACATCGATCTGGATTTCATGTAC GGAAGGAGCGTTGAAGAGGCGGAGGCGCTGAGAACTATGGAAAACGGTTA CATGAACCTGACGGAGGATGGCATGCCGGTGCGAAAAGACGACGGGACAT GGCTGGTGAGTGTACGGTACGAAGATTGGAACGCTTCCATCGCAGACCGT CCACGCTTTTCTGCGAATGTCTTCGGCAAGGTCGTTTGTAAATCCAGGCG ACTCTGGTTCAAGCCTCTCCCTGCTTCTCAACACACGGCGACGGGTTTTT TTAGGGCTGGCCCAGCTAGACTTGCGCCGCAAGAGAGTTACAACTCCTGC GGGCTCAAAACCCCAGACGCGCGCTGCATCTCACGTTGGGTTACCCCCCC CCCCCACGAACCCACCCCACACCGAATGTTTGCGAACGCTTGCCCAGATT GGTGATCAGCGCACGGCAATGTTCCCCGTGACGTTCGCCCTTCACATCAC ACTCCTTCGCGAGCATAACATCTGCTGCGACACGACCGCTCCTAGCCTCG GATACGAGGGAGACGAGGCACGTGTTTTGGCCGCACTGAAAATAAAAACC AGGGGTTCTCGTTGTTACCGTTGGGAACCGGAGAGCCATTTTACTTCTAC GGTGGTGATCCCAACAGCGGGATGGAGGATAGGAGGACGGGGGTTGATGA ACGGACACCCTCCCCAAAATAAAATAAATAATACATATATATATATATAT ACTCTTTTCAAAACTGATATGCATTTCGAGACCATAGTCCCCCGATCGTC GAGAATGTCCGACGCCCCTCGACATGGTCGTGACAACAAGCACCTGTACC AAACGCCACAACGAAATTCTTGCAGGACATATACCAAGCCTGCCGCGGCT GGACGATAGCTATCTTCGAGCACATTACGGGCAATGATTCATTCTGGACT ATAGCCCCATAGTGGTCGACGACTTAGGTGTGTGACCGTTCCCGCCATTG ATTCCGCTATCGATCCAATCACGGATCTCTTCGATCGATTGAAGTTATAA ATGAGTCCGCCACTATCTACCAACCTGTCCGCCTCGATTCGACGATCCTG ACTCTTGCGCTCGCTTGTGTTCCCTACTCCCGCTCGCCCGTATGAAGTCT CGTCCTCCTATGCCACAACGTCGACCACTCAATCGGAGTCCACAAGCGGT ACCCCCATGTCCGACTCTACCGAGGCCTCTACGACCACCTCCATCGATGA TATCTCACCTATCTACACAGATGATACCACATCCTACTCTCCCATTTCCA CATCTTTCGACTCCACCACCACAGACACCCGTGCCCGGGGCCTCTCGTCG ACGACCACTTCCGCGGCAACCAAAACCCGTAAAGACCCTTCAACGACCAC TTCTTCGAGAAATCGGCGCCCCCGGCGGCTTACCGAATACAACAGCGACC TAAACCCGGGAGCGGACGTGCTTGCCACGACGGTGGGCGTCGCGGCGTTG TATGCGGCCATTCCGCCCACTGTGCGGATTATGGACGAGGACTACGTGCC TGCGGACGAGGTAACGGGGGCAGGCAGCGTTGCTCCTGGTAGGAAAGAGC GCGTGGTTCACGGACTTGTCGTGGTGCTGCGCGCGCGCGCGCGGTGGGTG GGCGCGCTCTTTGAAAATCGGTTCGATCGCGTCGCTTGAGGTGTCAACGT ACGGAAGCGTGAAAGGGAGATACGTATACTCGGGGGGGAGGTTGGGGATC AATCGGCGTGGACTGATCGTGCGCGCGAACGGTGGGCGTGTTTGACAATT CGTGGTATGGAGGTGATACCTGAAGGGAGAAATGATAAGTACAAGTTTCC ACTCCAAGCAGGATCCAGTCACGTAAGCCCCGTCCTCGGCGAGCGTGCGT GGGTTTCTGTAAACCCTGCCGTTGTTTCAGCCCTCTATCGCCTTGGTTTT AGTCCAGAAGCCTATCAATCATGCACACGATATTAACTTTTTCAGGACGG TATTGAGCTGACGGAGGCCGCCGAGGATATCGCGGGACTCTTCGAGCGCA ATTCAGTCGGCAGCGTCATCCGAGGCGCAGTGTTCTCCTCAAGCCTCGCC GTGGATACCCACTTCTCCTCGGCGGTATCGACTACCTCGCCCTTGTTCAA GCTGCCCGTGGACGCCATTCAGAGAGGAAGAGACCACGGTACGGCCCTCG AAAAGTTGCAGCTCCTGCTCCATCACTGCTTATATTTCTCTACCGCGTCT CGTCGTTCCAATCCAGCGTGAGCCGCACCCGACGCTCGGCTCTTAGCGAC GACAGAAATACCTACGGTGAAGGAAAATTGCGAGACCGTCTCGGCGTCGA GCCTTGCTATGTTTTGGCTGTGGCCTCTGCTTTCTCGTGAAACGCGGCAC TTTTTCTTGACGATGGCATGCACGCCAAGAAGAACCTCTTTTTTAAAATT TTTTATTCGGGTCGTCCCCCGCCCTCGCAGGCGTTCCGACTTACAACGAT GCCCGCGAGGCCTACGGACTTTCCCGTGCAACGTCGTTCTCCGACGTGAC CGCGGACACCAACGTCGAGGCCCTCCTCGAAGAAGCCTACGGTGGTGACA TCGGCCTCCTAGACGCCCTGACCGGCGCACTTGCGGAAGGGAGCAACATG TCATCTTCTTCGATACTTGGGGACTTGCTGCAGGTGAGGGGTGAACCCTA GGCGACTAACGGAGACGAGGCCGCGGCGGAGAATTTTTTCATCCGTCCCC TTTCTCACATGCGGTTAGCCGGTCTGCGGTCGAGGTGTGTACTCAAGCGG CCTTGGGAGTTTTCAGTTTGAACAGGCCTTATTTTTTCGGGATGTTAACA TCAAACCGGAAGCGAGAAAACCTTGCTCTTCTGTTTCCGGTGTCAAGTAA ATGATTTCCCAGCCAGCTGCTGACTGCAAAAAGTAGCCCAGTGGTTTTAA TTATAAACTCGATAAGAGCTAAAACGGGGGGATTGAAAGTCACCGACGTC ATATCAAGGTACCTATGCCCCGTGCCCTAACCCGTGCCAATATCCGCGTT GCTCAACTTTTTAGCAACTGTATCTCCTTTGCGGCCCACAAGTACGTATG GCACTCAATTTTCTTTAGCCAATGTATCTCTCTTGAGACCCACAGGGCGT ACGGTCATCGCGCTGCCTCTCTCGGATTACATTGAATGCAATCTCGTGTT CACTCAGTAAAGAGGGTCATCAAACCGGAGATCGAACCACGGCTCAGCTT TTGTTACGTCAACACGAAAACCAGTCAGGTGGTTTTATTTAAAACAGTTT GAGCGAAGAGCTCACGGAAATCACGCCCATCCTCTAGCAGGCATCATGGA GGGCGCCAGCTCACATACATTGTTCCCAAAGTTCATGTCTTGGGCGTGCT TCTACGCCTGTTGCATGTCAGCATGAAGGAGATAACAGGGTGTGTTGCAG TGGGTTCGAAGAGCGCGGGGGTATACACGCCAACCAGGAACGCCCCCAAT CCCTTCTTTGATTCTCCCCCTCTGAGCTCCTCGCTGGTGCCGCAAATGAT CACACCGCGGCGACAGGAAGTCTGGAAGGACCAGCTCTACCGTTCCATTG TGGGCGACAGGCTGTTCCACCAGCACTACGTGCCGACCACGGACGTGGAG AATCTTACCCTACGCGATCTCATTGAGCATACGCTGAACGTGACGGACTT GCCCCTCTCCGTCTTTACGACTCCAGAAATCACGGTATGTTAAGCAGGCG AACCCGAGCAGTTTGTGGTTTCTTTTATTTGGCGGAGTTTCGTGGTTACC CGTATGCCCGTGGGTTGAAGCGCATCGGTGTTGAGTTTTGTCTGCTTTCA AAGCTTTAATCCTCTCCTTGTCCACCTACTAATATCAATAGTACTTCGGG CCACCGTCTGCTGCCTTCTTCGTCCGCCGCCTCTCACTCGCCGCCCGCAG GTGTGCTATTCCAACTGCTCGACGACGGAATCCTCCACCGTTTCTCTCTC CGACGAGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig977:63262..67671+

>mRNA_A-nodosum_M_contig977.3.2 ID=mRNA_A-nodosum_M_contig977.3.2|Name=mRNA_A-nodosum_M_contig977.3.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=978bp|location=Sequence derived from alignment at A-nodosum_M_contig977:63262..67671+ (Ascophyllum nodosum dioecious)
ATGTCCGACTCTACCGAGGCCTCTACGACCACCTCCATCGATGATATCTC
ACCTATCTACACAGATGATACCACATCCTACTCTCCCATTTCCACATCTT
TCGACTCCACCACCACAGACACCCGTGCCCGGGGCCTCTCGTCGACGACC
ACTTCCGCGGCAACCAAAACCCGTAAAGACCCTTCAACGACCACTTCTTC
GAGAAATCGGCGCCCCCGGCGGCTTACCGAATACAACAGCGACCTAAACC
CGGGAGCGGACGTGCTTGCCACGACGGTGGGCGTCGCGGCGTTGTATGCG
GCCATTCCGCCCACTGTGCGGATTATGGACGAGGACTACGTGCCTGCGGA
CGAGGACGGTATTGAGCTGACGGAGGCCGCCGAGGATATCGCGGGACTCT
TCGAGCGCAATTCAGTCGGCAGCGTCATCCGAGGCGCAGTGTTCTCCTCA
AGCCTCGCCGTGGATACCCACTTCTCCTCGGCGGTATCGACTACCTCGCC
CTTGTTCAAGCTGCCCGTGGACGCCATTCAGAGAGGAAGAGACCACGGCG
TTCCGACTTACAACGATGCCCGCGAGGCCTACGGACTTTCCCGTGCAACG
TCGTTCTCCGACGTGACCGCGGACACCAACGTCGAGGCCCTCCTCGAAGA
AGCCTACGGTGGTGACATCGGCCTCCTAGACGCCCTGACCGGCGCACTTG
CGGAAGGGAGCAACATGTCATCTTCTTCGATACTTGGGGACTTGCTGCAG
GAAGTCTGGAAGGACCAGCTCTACCGTTCCATTGTGGGCGACAGGCTGTT
CCACCAGCACTACGTGCCGACCACGGACGTGGAGAATCTTACCCTACGCG
ATCTCATTGAGCATACGCTGAACGTGACGGACTTGCCCCTCTCCGTCTTT
ACGACTCCAGAAATCACGGTGTGCTATTCCAACTGCTCGACGACGGAATC
CTCCACCGTTTCTCTCTCCGACGAGTGA
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