mRNA_A-nodosum_M_contig976.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig976.4.1
Unique NamemRNA_A-nodosum_M_contig976.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig976.4.1 vs. uniprot
Match: D7G9E3_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E3_ECTSI)

HSP 1 Score: 324 bits (830), Expect = 2.240e-90
Identity = 189/357 (52.94%), Postives = 224/357 (62.75%), Query Frame = 1 
Query:   64 TTIDNHLKTKQTRSSRIRVAS----EAQVKYSRKLPRSSSSGSPTSAVRRSKVSGKRRRKYTNPTTNAADASASGDFADTMAEEEPSYPPSHTPVGRDFQADIPDFLSYEERNRVC---TGTSARMVWRSIRDWDPQSRGMLAEYLHAAKEVVRAKQARPGVAVHVRLGDISIGVDQEYGQIDSIDRVGSYAVWAVTADRETCD----VVRVACSEMAQTEVLRSVIQRVQCEEEALAALVKTRCILDNFQPALDLLAKTSSGPQSVEQWTLNQVRTLEKALHDEFDPKRRLHGWARPGISMDREDFIDLTKVSKRVPGKTPAQVLAFYYKYLAAAEPLIDVVYGPKAAEARRQEKI 1101
            T  D+ +  K  R +R+R AS    E     +   P  S  G  +S  RR  ++GKR+R               G  A T  EE   YPP  T VG  +QADIPD L   ER        GT A+MVWRSIRDWDP SRGML+ YL AAK+ V+AKQ+RPGVA+HVRLG      D+     D      SYAVWAVTA R        V RV CSEMAQTEV  S IQRVQCEEEALAALVK RC LD+F PAL +L    + P+S++ WTL QVRTLE+AL  +++  RRLHGWAR G+ MDREDFIDL  VSK+V GK+P QVL F+Y+YLA AEPL DVVYG +AAEAR++E I
Sbjct:  221 TAADSGVTGKDRRPNRVRTASAGAAEGTPPGATPSPPGSEEGPASSVKRRLSIAGKRKR---------------GRPAKTAVEES-DYPPQRTLVGDGYQADIPDLLPAGERQAAAPTAAGTGAKMVWRSIRDWDPHSRGMLSSYLEAAKKAVQAKQSRPGVAIHVRLGGEG---DKGGTPGDKSSVASSYAVWAVTAGRNAGSNARGVARVGCSEMAQTEVPMSAIQRVQCEEEALAALVKARCTLDDFDPALKILVGDEASPESIQPWTLQQVRTLEQALAKDYNRDRRLHGWAREGMDMDREDFIDLADVSKQVSGKSPTQVLCFFYRYLATAEPLTDVVYGEEAAEARKREAI 558
[Close]
BLAST of mRNA_A-nodosum_M_contig976.4.1 vs. uniprot
Match: A0A6H5K0T4_9PHAE (BAH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T4_9PHAE)

HSP 1 Score: 315 bits (806), Expect = 1.370e-86
Identity = 176/315 (55.87%), Postives = 211/315 (66.98%), Query Frame = 1 
Query:  175 GSPTSAVRRSKVSGKRRRKYTNPTTNAADASASGDFADTMAEEEPSYPPSHTPVGRDFQADIPDFLSYEERNRVCT-----GTSARMVWRSIRDWDPQSRGMLAEYLHAAKEVVRAKQARPGVAVHVRLGDISIGVDQEYGQIDSIDRVGSYAVWAVTADRETCDV-VRVACSEMAQTEVLRSVIQRVQCEEEALAALVKTRCILDNFQPALDLLAKTSSGPQSVEQWTLNQVRTLEKALHDEFDPKRRLHGWARPGISMDREDFIDLTKVSKRVPGKTPAQVLAFYYKYLAAAEPLIDVVYGPKAAEARRQEKI 1101
            GS T+      +SGKR+R    PT    +    GD     AE     PP  T VG D Q DIPD L  E+R++        GT A MVW+S+RDWDP SRGMLA YL AA  +VR+KQARPGVA+HVRLG  +   D             SYAVWA+T    +    VRVACSE+AQTE+  S IQR  CEEEAL ALVKT C+LDNF+PAL +LA +++ P+SV+ W+L+QVRTLE AL  +FD   R  GWARPGI MDREDFID+ KVSK VPGKTPAQVL FY++YLAAA PL DVVYGP+AAEAR++EK+
Sbjct:  445 GSSTAPTAELILSGKRKR---TPTAKRME----GDNEPCEAEAPDFIPPRRTLVGEDHQVDIPDLLPAEDRSKAAAAGRAEGTGAEMVWQSVRDWDPHSRGMLAGYLQAANTMVRSKQARPGVAIHVRLGGKN--EDGXXXXXXXXXXXXSYAVWALTTGVSSASGDVRVACSEIAQTEIPASAIQR--CEEEALEALVKTNCVLDNFEPALKMLADSTTSPESVQPWSLDQVRTLEAALDKDFDVNGRSQGWARPGIDMDREDFIDIAKVSKEVPGKTPAQVLQFYFRYLAAARPLTDVVYGPEAAEARKREKL 748
[Close]
BLAST of mRNA_A-nodosum_M_contig976.4.1 vs. uniprot
Match: A0A6H5JX23_9PHAE (BAH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX23_9PHAE)

HSP 1 Score: 313 bits (802), Expect = 1.130e-85
Identity = 184/357 (51.54%), Postives = 221/357 (61.90%), Query Frame = 1 
Query:   64 TTIDNHLKTKQTRSSRIRVAS----EAQVKYSRKLPRSSSSGSPTSAVRRSKVSGKRRRKYTNPTTNAADASASGDFADTMAEEEPSYPPSHTPVGRDFQADIPDFLSYEERNRVC---TGTSARMVWRSIRDWDPQSRGMLAEYLHAAKEVVRAKQARPGVAVHVRLGDISIGVDQEYGQIDSIDRVGSYAVWAVTADRETCD----VVRVACSEMAQTEVLRSVIQRVQCEEEALAALVKTRCILDNFQPALDLLAKTSSGPQSVEQWTLNQVRTLEKALHDEFDPKRRLHGWARPGISMDREDFIDLTKVSKRVPGKTPAQVLAFYYKYLAAAEPLIDVVYGPKAAEARRQEKI 1101
            T  D+ +  K    +R+R AS    E     +   P     G  +S  RR  ++GKR+R               G  A T  EE   +PP  T VG  +QADIPD L  EER        GT A+MVWRSIRDWDP SRGML+ YL AAK+ V+AKQ+RPGV VHVRLG      D+     D      SYAVWAVTA R+       V RV CSEMAQTEV  S IQRVQCEEEALAALVK RC LD+F PAL +L    + P+S++ WTL QVRTLE+AL  + +  RRLHGWAR G+ +DRED IDL  V K++PGK+P QVL F+Y+YLA AEPL DVVYG +AAEAR++E I
Sbjct:  423 TATDSGVTGKDRCPNRVRTASAGAAEGTPPGATPSPPGWEEGPASSVKRRLSIAGKRKR---------------GRPAKTAVEES-DFPPRRTLVGNGYQADIPDLLPAEERKAAAPTSAGTGAKMVWRSIRDWDPHSRGMLSSYLEAAKKAVQAKQSRPGVVVHVRLGGKG---DKGGTPGDESSVASSYAVWAVTAGRDAGSNARGVARVGCSEMAQTEVPISAIQRVQCEEEALAALVKARCTLDDFDPALKILVGDEASPESIQPWTLQQVRTLEQALAKDCNRDRRLHGWAREGMDIDREDLIDLADVIKQIPGKSPTQVLCFFYRYLATAEPLTDVVYGEEAAEARKREAI 760
[Close]
BLAST of mRNA_A-nodosum_M_contig976.4.1 vs. uniprot
Match: D8LCW0_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW0_ECTSI)

HSP 1 Score: 305 bits (782), Expect = 7.460e-84
Identity = 163/265 (61.51%), Postives = 192/265 (72.45%), Query Frame = 1 
Query:  319 PSHTPVGRDFQADIPDFLSYEERNRVC----TGTSARMVWRSIRDWDPQSRGMLAEYLHAAKEVVRAKQARPGVAVHVRLGDISIGVDQEYGQIDSIDRVGSYAVWAVTADRETCDVVRVACSEMAQTEVLRSVIQRVQCEEEALAALVKTRCILDNFQPALDLLAKTSSGPQSVEQWTLNQVRTLEKALHDEFDPKRRLHGWARPGISMDREDFIDLTKVSKRVPGKTPAQVLAFYYKYLAAAEPLIDVVYGPKAAEARRQEKI 1101
            P    VG D+QADIPD LS EER         GT A+MVWRSIR+WDPQSR ML+ YLHAAK+V++ KQA PGVAVHVRLGD       + G   S+    SYAVWA+TA R +  V RVACSEMAQT V  S +QRVQ EEEALAALVK RC LD+F+PAL +L + S+  +SV  WTL+QVRTLE+ L  EF   RRLHGWAR G+ ++REDFIDL  V K+V GKT AQVL+FYY+YLA A+PL DVVYG +AAEAR+ E I
Sbjct:  344 PQQILVGDDYQADIPDLLSAEERKEEAGHPAAGTGAKMVWRSIRNWDPQSRQMLSTYLHAAKDVLQKKQASPGVAVHVRLGDSGSAAKGDKGVTTSV--ASSYAVWAITAGRHSPGVTRVACSEMAQTNVPMSAVQRVQSEEEALAALVKARCTLDDFRPALKVLDQAST--ESVAPWTLSQVRTLEQVLEKEFKWDRRLHGWAREGMDLEREDFIDLANVCKQVRGKTRAQVLSFYYRYLAHAKPLTDVVYGKEAAEARKLEAI 604
[Close]
BLAST of mRNA_A-nodosum_M_contig976.4.1 vs. uniprot
Match: A0A6H5JLS8_9PHAE (ELM2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS8_9PHAE)

HSP 1 Score: 301 bits (772), Expect = 8.760e-82
Identity = 156/273 (57.14%), Postives = 197/273 (72.16%), Query Frame = 1 
Query:  301 EEPSYPPSHTPVGRDFQADIPDFLSYEERNRVC----TGTSARMVWRSIRDWDPQSRGMLAEYLHAAKEVVRAKQARPGVAVHVRLGDISIGVDQEYGQIDSIDR--VGSYAVWAVTADRETCDVVRVACSEMAQTEVLRSVIQRVQCEEEALAALVKTRCILDNFQPALDLLAKTSSGPQSVEQWTLNQVRTLEKALHDEFDPKRRLHGWARPGISMDREDFIDLTKVSKRVPGKTPAQVLAFYYKYLAAAEPLIDVVYGPKAAEARRQEKI 1101
            ++P   P    VG D+QADIPD LS E+R +        T A+MVWRSIR+WDPQSR ML+ YLHAAK+VV+AKQA PGVAVHVRLGD      +  G +++      GSYAVWA+T    +  V+RVACSE+AQT+V    IQRVQ EE+AL ALVK RC LD+F+PAL +  + S   +SV+ W L+QVR L++AL + FDP  R HGWAR G+ ++REDFIDL  VSK+VPGKTP QVL+F+Y+YLAAA+PL DVVYG +AAEAR+ E +
Sbjct:  495 DKPDCDPQQILVGDDYQADIPDLLSAEDRKKEAGHPAARTGAKMVWRSIRNWDPQSRHMLSTYLHAAKDVVKAKQASPGVAVHVRLGDAG---SKNNGNVEAATTSVAGSYAVWAITVGCHSAGVIRVACSEIAQTKVPIPAIQRVQSEEQALGALVKARCTLDDFKPALKVFDQASM--ESVDPWKLSQVRNLKQALEEHFDPNPRSHGWAREGMDLEREDFIDLANVSKQVPGKTPTQVLSFFYRYLAAAKPLTDVVYGKEAAEARKLEAV 762
[Close]
BLAST of mRNA_A-nodosum_M_contig976.4.1 vs. uniprot
Match: A0A6H5KVI2_9PHAE (ELM2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI2_9PHAE)

HSP 1 Score: 292 bits (748), Expect = 1.290e-78
Identity = 156/260 (60.00%), Postives = 186/260 (71.54%), Query Frame = 1 
Query:  334 VGRDFQADIPDFLSYEERNRVC----TGTSARMVWRSIRDWDPQSRGMLAEYLHAAKEVVRAKQARPGVAVHVRLGDISIGVDQEYGQIDSIDRVGSYAVWAVTADRETCDVVRVACSEMAQTEVLRSVIQRVQCEEEALAALVKTRCILDNFQPALDLLAKTSSGPQSVEQWTLNQVRTLEKALHDEFDPKRRLHGWARPGISMDREDFIDLTKVSKRVPGKTPAQVLAFYYKYLAAAEPLIDVVYGPKAAEARRQEKI 1101
            VG D+QADIP  LS +ER +       GT A+MVWRSIR+WDPQSR ML+ YLHAA +V++ KQ  PGVAVHVRLGD       + G   S+    SYAVWA+ A R +   VRVACSEMAQT V  S +QRVQ EEEALAALVK RC LD+F+PAL +L + S    SV  W L+QVRTLE+ L  EF   RRLHGWAR G+ +++EDFIDL  V K+V GKTPAQVL+FYY+YLA A+PL DVVYG +AAEAR+ E I
Sbjct:  504 VGDDYQADIPALLSAQERKKEAGHPAAGTGAKMVWRSIRNWDPQSRQMLSTYLHAATDVLQKKQGFPGVAVHVRLGDRGSAAKGDKGVTTSV--ANSYAVWAIMAGRHSAGAVRVACSEMAQTTVPISAVQRVQSEEEALAALVKARCTLDDFRPALKVLDQASLD--SVAPWALSQVRTLEQVLEKEFKWDRRLHGWAREGMDLEQEDFIDLANVCKQVRGKTPAQVLSFYYRYLAHAKPLTDVVYGKEAAEARKLEAI 759
[Close]
BLAST of mRNA_A-nodosum_M_contig976.4.1 vs. uniprot
Match: D8LCW2_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW2_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 1.130e-49
Identity = 118/232 (50.86%), Postives = 146/232 (62.93%), Query Frame = 1 
Query:  217 KRRRKYTNPTTNAADASASGDFADTMAEEEPSYPPSHTPVGRDFQADIPDFLSYEERNRVC----TGTSARMVWRSIRDWDPQSRGMLAEYLHAAKEVVRAKQARPGVAVHVRLGDISIGVDQEYGQIDS--IDRVGSYAVWAVTADRETCDVVRVACSEMAQTEVLRSVIQRVQCEEEALAALVKTRCILDNFQPALDLLAKTSSGPQSVEQWTLNQVRTLEKALHDEFDP 894
            K RR      T+   A A+ D A     E     P    VG D+QADIPD LS EER +       GT A+MVWRSIR WDPQSR ML+ YLHAAK+VV+AKQA PGVAVHVRLGD   G  ++ G +++       SYAVWA+T  R +  V+RVACSEMAQT+V    IQRVQ EE+ALAALVK RC LD+F+PAL++  + S   +SV+ W L+QVR     +  +  P
Sbjct:  395 KYRRSIAGTRTSGRSAKAAVDGA-----ENSDCAPQQILVGDDYQADIPDLLSAEERKKEAGHPAAGTGAKMVWRSIRKWDPQSRHMLSTYLHAAKDVVKAKQASPGVAVHVRLGD---GGSEKTGDVEAGTTSVASSYAVWAITVGRHSAGVIRVACSEMAQTKVPIPAIQRVQSEEQALAALVKARCTLDDFKPALNVFDQASM--ESVDPWKLSQVRCASVTIVCKISP 616
[Close]
BLAST of mRNA_A-nodosum_M_contig976.4.1 vs. uniprot
Match: D7G9E4_ECTSI (BAH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E4_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 1.080e-43
Identity = 85/126 (67.46%), Postives = 104/126 (82.54%), Query Frame = 1 
Query:  724 CEEEALAALVKTRCILDNFQPALDLLAKTSSGPQSVEQWTLNQVRTLEKALHDEFDPKRRLHGWARPGISMDREDFIDLTKVSKRVPGKTPAQVLAFYYKYLAAAEPLIDVVYGPKAAEARRQEKI 1101
            CEE AL ALVKT C+LDNF+PAL +LA +++ P+S++ W+L+QVRTLE AL  +FD   R  GWARPGI MDRED ID+ KVSK VPGKTPAQVL FY++YLAAA PL DVVYGP+AAEAR++EK+
Sbjct:  517 CEEAALEALVKTNCVLDNFEPALKMLADSTTSPESLQPWSLDQVRTLEAALDKDFDVNGRSQGWARPGIDMDREDCIDIAKVSKEVPGKTPAQVLQFYFRYLAAARPLTDVVYGPEAAEARKREKL 642
[Close]
BLAST of mRNA_A-nodosum_M_contig976.4.1 vs. uniprot
Match: D7G9E6_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E6_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.680e-23
Identity = 95/282 (33.69%), Postives = 131/282 (46.45%), Query Frame = 1 
Query:  313 YPPSHTPVGRDFQADIPDFLSYE-ER--NRVCTGTSARM----VWRSIRDWDPQSRGMLAEYLHAAKEVVRAKQARPGVAVHVRLGDISIGVDQEYGQIDSIDRVGSYAVWAVTADRETCDV--VRVACSEMAQTEVLRSVIQRVQCEEEALAALVKTRC--------ILDNFQPALDLLAKT---SSGPQSVEQWTLNQVRTLEKALHDEFDPKRRLHGWARPGISMDREDFIDLTKVSKRVPGKTPAQVLAFYYKYLAAAEPLIDVVYGPKAAEARRQEK 1098
            YP   T VG D QADIP  L  E ER  ++     +A M    VW S+RDW    R  L  YL  A+     K+  PGV   + + +   G D+         R      WAV A  +  D   +RV C+    +EV R  +Q  Q EE A+ AL++           ++DN + AL LL  T    SGP +   WT  Q+  L KAL   FD  R        G    R++  D+T +   V GKTP+QVL+FYY+Y+A  + L +V+   +A    R E+
Sbjct:  250 YPQKETNVGEDHQADIPSMLLTEAERAADKAAMEETAEMGGTAVWSSVRDWTASERERLDGYLEEARRAADEKRMSPGVPALISINN---GGDR---------RRKRKMAWAVMAGGKPEDEEKLRVGCAGGGVSEVSRRELQPTQVEELAMQALMQEDAGNKKGKGSLMDNTRTALGLLDNTMVDDSGPLAT--WTGPQIEALSKALETHFDADRFTRS---RGHERHRDEHTDVTSLIASVDGKTPSQVLSFYYRYMATGDALTEVMGSAEAQAKVRSER 514
[Close]
BLAST of mRNA_A-nodosum_M_contig976.4.1 vs. uniprot
Match: A0A6H5K2H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2H5_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 4.430e-23
Identity = 95/285 (33.33%), Postives = 129/285 (45.26%), Query Frame = 1 
Query:  313 YPPSHTPVGRDFQADIPDFLSYE----------ERNRVCTGTSARMVWRSIRDWDPQSRGMLAEYLHAAKEVVRAKQARPGVAVHVRLGDISIGVDQEYGQIDSIDRVGSYAVWAVTADRETCDVVR--VACSEMAQTEVLRSVIQRVQCEEEALAALVKTRC--------ILDNFQPALDLLAKT---SSGPQSVEQWTLNQVRTLEKALHDEFDPKRRLHGWARPGISMDREDFIDLTKVSKRVPGKTPAQVLAFYYKYLAAAEPLIDVVYGPKAAEARRQEK 1098
            YP   T VG D QADIP  L  E          E      GT+   VW S+RDW    R  L  YL  A+     K+  PGV   + + +   G D+         R      WAV A  +  D  +  V C+    +EV RS +Q  Q EE A+ AL++           ++DN + AL LL  T    SGP +   WT  Q+  L KAL   FDP R        G    R++  D+T +   V GKTP+QVL+FYY+Y+A  + L +V+   +A    R E+
Sbjct:  401 YPQKETNVGIDHQADIPSMLLTEAERAADKAAMEETLEMGGTA---VWSSVRDWTASERERLDGYLEEARRAADEKRMSPGVPALISINN---GGDR---------RRKRKIAWAVMAGGKPEDKEKLLVTCAGGGVSEVSRSELQPTQVEELAMQALMREDAGNKKGKGSLIDNARTALGLLDNTMVDDSGPLAT--WTGPQIEALSKALEANFDPDRFTRS---RGHERHRDEHTDVTSLIASVDGKTPSQVLSFYYRYMATGDALTEVMGSAEAQAKVRSER 665
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig976.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G9E3_ECTSI2.240e-9052.94ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K0T4_9PHAE1.370e-8655.87BAH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JX23_9PHAE1.130e-8551.54BAH domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LCW0_ECTSI7.460e-8461.51ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JLS8_9PHAE8.760e-8257.14ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KVI2_9PHAE1.290e-7860.00ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LCW2_ECTSI1.130e-4950.86ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G9E4_ECTSI1.080e-4367.46BAH domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G9E6_ECTSI1.680e-2333.69ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K2H5_9PHAE4.430e-2333.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig976contigA-nodosum_M_contig976:39418..45820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3215
Hectar predicted targeting categoryother localisation
Exons11
Cds size1821
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig976.4.1prot_A-nodosum_M_contig976.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig976 39418..43497 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870504.2899106-CDS-A-nodosum_M_contig976:39417..398371680870504.2899106-CDS-A-nodosum_M_contig976:39417..39837Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig976 39418..39837 +
1680870504.3037755-CDS-A-nodosum_M_contig976:40719..410221680870504.3037755-CDS-A-nodosum_M_contig976:40719..41022Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig976 40720..41022 +
1680870504.316924-CDS-A-nodosum_M_contig976:41435..415641680870504.316924-CDS-A-nodosum_M_contig976:41435..41564Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig976 41436..41564 +
1680870504.3315465-CDS-A-nodosum_M_contig976:41684..418341680870504.3315465-CDS-A-nodosum_M_contig976:41684..41834Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig976 41685..41834 +
1680870504.3480868-CDS-A-nodosum_M_contig976:42088..421571680870504.3480868-CDS-A-nodosum_M_contig976:42088..42157Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig976 42089..42157 +
1680870504.3579931-CDS-A-nodosum_M_contig976:42390..431111680870504.3579931-CDS-A-nodosum_M_contig976:42390..43111Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig976 42391..43111 +
1680870504.3672428-CDS-A-nodosum_M_contig976:43468..434971680870504.3672428-CDS-A-nodosum_M_contig976:43468..43497Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig976 43469..43497 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870504.3796713-UTR-A-nodosum_M_contig976:43497..436701680870504.3796713-UTR-A-nodosum_M_contig976:43497..43670Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig976 43498..43670 +
1680870504.3907952-UTR-A-nodosum_M_contig976:43856..442421680870504.3907952-UTR-A-nodosum_M_contig976:43856..44242Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig976 43857..44242 +
1680870504.4105778-UTR-A-nodosum_M_contig976:44431..444971680870504.4105778-UTR-A-nodosum_M_contig976:44431..44497Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig976 44432..44497 +
1680870504.4315338-UTR-A-nodosum_M_contig976:44903..449651680870504.4315338-UTR-A-nodosum_M_contig976:44903..44965Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig976 44904..44965 +
1680870504.4440527-UTR-A-nodosum_M_contig976:45113..458201680870504.4440527-UTR-A-nodosum_M_contig976:45113..45820Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig976 45114..45820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig976.4.1

>prot_A-nodosum_M_contig976.4.1 ID=prot_A-nodosum_M_contig976.4.1|Name=mRNA_A-nodosum_M_contig976.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=607bp
MPLVSNGGQQVAIPVCGGDACTTIDNHLKTKQTRSSRIRVASEAQVKYSR
KLPRSSSSGSPTSAVRRSKVSGKRRRKYTNPTTNAADASASGDFADTMAE
EEPSYPPSHTPVGRDFQADIPDFLSYEERNRVCTGTSARMVWRSIRDWDP
QSRGMLAEYLHAAKEVVRAKQARPGVAVHVRLGDISIGVDQEYGQIDSID
RVGSYAVWAVTADRETCDVVRVACSEMAQTEVLRSVIQRVQCEEEALAAL
VKTRCILDNFQPALDLLAKTSSGPQSVEQWTLNQVRTLEKALHDEFDPKR
RLHGWARPGISMDREDFIDLTKVSKRVPGKTPAQVLAFYYKYLAAAEPLI
DVVYGPKAAEARRQEKIPKNCEATKQYYLSGGPSRGSNRTANIRAGSTQT
SDGSQRANPGSLRDGIGSASGNRLPKRRLSSSKSHVLRLPSPQPSKEHIL
NGSKIDVDQSSAADTSVGHVGYEKAESPLCQATFGKYGSSAGKCGSGLTS
PNLPLPRRIRSSHAVDGITSVGSGPTEGPFDRTSDDDEDGHCALNKPTSR
AHAVINDDVDCNADGGGVRHAVIQHGRSWVQFNRQLSGPSSCCRDLRVAR
YGRRST*
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mRNA from alignment at A-nodosum_M_contig976:39418..45820+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig976.4.1 ID=mRNA_A-nodosum_M_contig976.4.1|Name=mRNA_A-nodosum_M_contig976.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6403bp|location=Sequence derived from alignment at A-nodosum_M_contig976:39418..45820+ (Ascophyllum nodosum dioecious)
ATGCCTCTCGTATCGAACGGAGGGCAGCAGGTAGCTATACCGGTCTGTGG
AGGTGATGCTTGTACCACAATCGACAACCATTTAAAAACTAAGCAAACAC
GATCTTCGAGAATACGGGTTGCTAGTGAAGCTCAAGTGAAGTACTCGCGT
AAGCTCCCACGATCGTCCTCATCAGGGTCACCTACGAGTGCTGTCAGGCG
GTCTAAGGTTTCCGGCAAAAGGAGAAGGAAGTATACCAACCCGACTACTA
ATGCTGCAGATGCTTCTGCTAGTGGTGATTTCGCCGACACGATGGCGGAG
GAAGAACCAAGCTACCCTCCAAGCCACACGCCCGTGGGAAGGGATTTTCA
AGCGGACATTCCCGACTTCCTGTCCTATGAAGAAAGGAACCGGGTATGTA
CAGGAACCAGCGCTCGAATGGTGAGTGATGATCCTGACTTTCCAGGTACT
ACTTAGGATTTGACCCAAGCTTGGCTGCGATTTGTTCTAAGCGGGTTCTG
GCTCATCACCCGCGTAAGACAAAAACATATTTCGATTTGTTGTTTACACT
GTAACCACGTCAGACCGTGCGATTGAACCCACTATGGCTGCTCAAGTATT
CTACACAACGAGATTTGGTCATTTATATGCACAGCACTGTTCGCTGAAAT
CAGAGCTCTTGAACTCACTCTATCTGTTGTGCTCTACGGCGGCTTTATTG
TTAGCTGGGGACTATGATTTACGGTAGCTAACACGTGAGGGGCTTCGGTG
ACAATGTTGACGGCGAGATTCCACGGAATTTTTCCAACTCTTGGCCGAAC
GCTTTGACAATATCTTTTCACTGTATCTTATTTTCAGTGTGACCATGTAC
GTTCTTAACAGTGTTTTCTCCTTCCAGAAACAATTACATGTTGGTAACCG
TACATTATATTCATGTCACATTGAGTATTCAACTGTTTCTCATCGAGTCG
ATCGAGGCTGCTCTCGGTATGGAGTAAAGGAAGTTTGATGAACCGTTTTG
CTATTGGTCGGTGCTATCGCTTGTAGAGTCGCATAACTTTTTGTCGCGAT
TTGGATCCCTGTTGGTCTGAGTAGCGGGTTGTCACCATGATGTGACCCGT
TGACCTTGGTACCTCTTGTGACCACGTACCGGATTGGCAACCACGTATAT
TACTGGGTATGGTTGAGGCCCGATCGGTTAATGTGAAGACAACAACAACA
ACAACAACATCAAGAAAAATAAACTTGTGTGCGGCAGCATTAACATCCCC
CACGGCGTGCGCACGCATTTTTTGCATTACGATGGAATGCCGTCGGAAGT
AGGTGTGGCGAAGTATCCGTGACTGGGATCCACAATCTCGCGGTATGCTG
GCTGAGTACCTACACGCTGCCAAAGAGGTGGTTCGGGCAAAGCAAGCACG
TCCGGGCGTTGCTGTTCACGTACGACTGGGTGATATCTCCATCGGCGTTG
ACCAAGAATATGGTCAAATAGACAGCATTGACCGCGTCGGCAGCTATGCC
GTCTGGGCCGTCACAGCTGACCGCGAGACTTGTGATGTTGTAAGAGTAGC
ATGCTCGGAAATGGCCCAGACTGAGGTCCTTAGGTCTGTCATCCAAAGAG
TACAGGTAAGGCTGCAATGCCAAAAGTAAGTGTGGATGCGCATGTCTCCT
TGTTTCTATCTTGGCCGATATGAATCGGTACTACTGCCGTCGCTGTATCC
AACGGTGTAAGTGCCAACTCTGATGTAATATTCTCCACTTGCTTGGGTAG
TACGATACTTGTCAGATATACCTCAAATAACGACATCCAGTATTATGTTG
TGACCAAAGATAGTTAGATCGTGTACGCGATCCGACGTTGATACTGCAAA
AAATATTATGCCCCTTACGATGTGTTTCTCGTATACACTCCTCTAGCTGA
TTTAAAACTGATATTCTAAGTTAAAAACGGCATACCGAAGAAGTTACACG
TCCCGTCCTAAGATGAAGCTGGCTCCCTTATAAGTGTCCGCGCTGTTTCC
CCTTTCTCGATCGAACAGTGCGAGGAGGAGGCCTTGGCTGCCTTGGTGAA
AACTCGGTGCATTCTCGATAACTTTCAGCCAGCATTGGATCTTCTTGCCA
AAACTTCGTCGGGTCCTCAGAGCGTGGAACAATGGACGCTCAACCAGGCA
AGATAGTCACTAAACCTTCAGCATCATCTGAGATCCGTGGTATTCCTAAC
CTGGAAGCAGAATACCCTCACAAAGATGAATCAACGGCTTAATACGCGTG
GGACGATTTTTGTTCAGGTACGAACGCTCGAGAAGGCCCTTCATGACGAG
TTTGATCCCAAGCGGCGTCTTCATGGCTGGGCCAGACCAGGAATATCCAT
GGATCGCGAGGATTTCATCGATCTTACTAAAGTTAGCAAGCGTGTTCCTG
GCAAGACCCCTGCACAGGTAAGTAGCCCTAACCCTAGCTCTTTTCGATAT
ATAGTAGCTCTGTTCGTTATATGTCCATTAGCTCCCAAACAACGCATGTC
TCGATTTATCACATCCTCGACGGCGACGCCCCGACATTTTGAGCCCTCAA
CAGCTCTTCTCGCTTTGCGAAAGTAAACTCACAAATGAATCAGCCTTAAA
ACTGGGTATTATTCAGTTCCTGATATTCTACTCCTGCTCCCCTTGCGTGT
GGATGCAATGTGCTTTCAAAGGTCCTGGCATTCTACTACAAGTACCTTGC
GGCCGCTGAGCCACTGATCGATGTGGTATATGGACCCAAGGTGGGGTCCT
CCTCGACCGCTACCGTAAACTGAGAGCACAAATATGGACTCCGAGGGTTC
ACGCCTAGTCTAGCAAATTTCACGTGCGACATTTTTTTGCAATTCTTTCT
TTTTCAATTACGGTCTGTAAGTGTTTTCTCACTATTACTCGAAATTTGCA
CGAACTAGGCATAGTACTTTATACCACAGGCGATGCTATTATTCTAATTT
AGCATCCCTTGGCTACGATACAGGCTGCTGAAGCTCGTCGACAGGAGAAG
ATACCCAAGAACTGTGAAGCCACCAAGCAATACTATTTGAGTGGTGGCCC
GTCGCGTGGTAGCAACCGCACCGCCAATATCAGAGCGGGCTCTACACAAA
CTTCGGATGGGTCACAACGAGCTAATCCTGGCAGTCTGAGAGACGGTATT
GGAAGTGCAAGCGGCAACCGTCTGCCTAAGAGGAGGCTCAGTAGCTCCAA
GTCACACGTTCTTCGGCTCCCGTCTCCCCAGCCATCCAAAGAGCACATCC
TGAATGGAAGCAAGATCGACGTTGACCAATCTTCCGCCGCAGACACATCC
GTAGGTCACGTGGGCTATGAGAAAGCTGAGTCACCCTTATGCCAGGCCAC
GTTTGGGAAATATGGCTCCAGTGCTGGAAAATGTGGCTCGGGTCTCACTT
CCCCTAATCTACCTTTACCCCGGAGAATCAGGTCAAGCCACGCTGTGGAC
GGCATCACTTCTGTCGGTTCCGGTCCTACGGAAGGACCATTTGACAGAAC
TAGCGATGATGATGAAGACGGTCATTGTGCTCTGAATAAGCCAACGTCCA
GAGCTCATGCGGTAATTAACGATGACGTCGATTGCAACGCCGATGGCGGT
GGGGTTCGTCACGCTGTCATCCAACATGGGAGGAGCTGGGTACAATTCAA
CCGACAGCTCTCCGGCCCGTCCTCCTGTTGCCGAGATCTTCGAGGCGAGA
TTTGATTTTATCCCCGTCCCTTTAAACGTGTTCGCTGGTACAACAGTTAT
AACTAGACGTTCCTTTGATGTCCTCTGTGCGGGGAGTTTCAAGCTTCGTC
GTGATTCTCCCCGAGTCCTTTCGCCCAAAAGTGCCGCGCTTCTGCCCTTA
TCTGTGTGTCGCCCGCCGGCAAATATACTCGTCAATTCTGGCGGCGCTTG
AACTTTACGGCATGTTGCGGTGACCCTTCTTGTATAATACCTTAATGCCT
TCCCGATATCGGTATCCGCAATATCTACTCATATTGAGCATCGCCCCCCT
CTTTCGCCCCCATGTGGGCCCTCGCCCCACCTCTTGATGTCCGCTTTCCA
GTTGCAAGATATGGACGAAGAAGCACGTAGCCAATTTTCTGCTGAAAACA
GACGTAGAATCCTACCGCCCATTCCTGGCGCCAAAGCATCCTCGCCCAAG
TTAGTGGTGAAGGCGGCCGCAACGCACCCGAACACCTTGGGACCGCAAGG
ACTGAGACGGGTAGCAAGACAAATATATTCTACTTCTGCTGGAGGAGTGT
CAGGTAGGCGTCTTCCAGCCTCCCGTCTTCGAACGTACTTTGCCCTTCTC
CTTAGGTTTAGCCTTCGTATCATCTTTTAGCGCTTTCTACGAAGATTTAC
CAACAACGCTTGTACATGGCATTTCAGGCAGTCCGTGAAACGTCTGATAG
TTTTTTTTACCCTCCTGTCTTTTATACCGTCTCTGTTAGTTCCAACTGTC
CAGCCACCGCCCACCGACTCCGTACGACCGCGATCGGCAGCTGCCAAAGG
CAGCAGCATGGAACGACAAAGGACGGGTCGTGTCACCTACACTCCGTACA
CCGTCCCAATACGTGACGTCGGTCTGACTGAGGTCCAGAGATATGCCGTC
TGGGATAGCCGGTTAGCTCCCTGTTATAGTCATGACCCTAATATCCAGCG
TCACGATGGTCGATATATCTACGGGGTCGGCGACAGCAGCACGCCAGACT
TGGCGACAGCGCCGCCTGATAACAACGTCCAACAGACCCTGGAGAAGGCA
CCAACTGATAACATGTTCGGAAGGATGACCCCCTGTTGGCGACTATTGGA
AAGGGCAAAGTTGTATATGGAAAAGGTGATTATTGCACTGGGTACCTTTA
TGCGCATTAAAAAGCTGTCGATATGACAAGTCAGGCACATTTGGTCCCGA
AAACTATATGCGAAGCGATGAAGACGTATGGGACCAAGTGAAACCATTCC
ATTGAGAGTTCTTATGTTGGACTGATCTTTCGGTTACCGGTGATCGTCGC
TCACAATACGACAGGATCAGCTCGTTTATATGAGAGGGCTCATCCTTCTA
CACGCCAAGAAGTCAATGAGCAGGGACCAAGTAACTTCAATTGCATCCTG
AGAAGTCGATTGTTCTTTCTTCTAACGGCAAACATTGGCGAGAGTATTGA
GGATCACTGTGTTATTTCCCAACTATTTTTGATGACATCCTCTCCTTCCA
TTCGGCTGTATTGAGGATTACTGTGCTATTTTAATAGCTATAGGCATCTG
CGACGACCTTCAAGAGGGATCGACAGTCGAAATCCCGAATTCTAATCGGT
TCGGGCCACTGCTTGTCGCGTCTATGTCGGCCATCCAATCGTTGTCACTC
AGTTCTAAAGTGCCGTTACCGTGAGCGTTTAACTCACCGTTAGAGCAATA
TCATATTCAAACGGATTCGGTTTCCTCGACCCCGTCTGTAACACCTTTAC
GTCATGGATGTTTGTGCCTATGACTCGCTACAACAGCTACTTGAGAGAGC
CGAGAGCTGCCTACAAGAGAAAGGCCATATCTTCGCCGCCTTCGTCAAGT
AAGCTTGAGCTGTATTGTGTGTGTTGTGATGTGTTTGTGGCAGATCCTGA
TCTTAGGGCGTTCGACCCCAGATAATCGCATTCGACATCATTCGCCGTCG
TAGCTCTAACCCCCATTTTCACCACCACGGCCAACAATAACTGCAGGATG
TTCGACCGAGTTAATCAACCTCCTTCTGTGCCCGGATACCCGACGAAGAA
GCAACCTGGCCCCAGCCTCAGCGCTGGTCGAAGACAAGTGATGCGGTATA
CCTCACATTATGCCCTCCCTGCTACCATTCCTGAAGACTCGGGATTAACC
CATTATTCGTCCGGACCTCGTAGCTTCCGGGGAGAGATGGGGGGGCATAT
GACCGCACCTCCCAGCGACGTCAGCGCTTGTAGTGCAGACGCCACTCGAA
GCCCTCCTGTCCGCGTATTTTCATATCCACACCCCGCCGACGTCATGCCG
AGGGACGTTTGGTACCGACCCCGCCTCGGGGATGGCGTCGACGGTTTAGC
ACAGTATCCTTCTGGCCTCGATCCCCCCGTGATGTCCATAACTGAGGATT
CAAGACGGGAAGCGCCCACTCTGACATATGCCTTCTGCGACAGGGAGGCA
GTATAAAGGAAGATTTGGACGCAGCAATGGCTCCATCGGCCACTGCATCA
ACCATCACATTGGCGGATGGAGTCCAGAAATGCTTCGGTGGAAGCTATGG
CAGCAGCAGAAGAGGCAGCGAAGAGGGGCGAACCGCGCGGAGATTCAACG
TAGATTATTAGTAGTTCAAGCCATTGGTTCAACATATCGTCTGTAAATGC
TTTCTTTGGCCAAGTGTTTTTTCTCTCCTATGTCTTGCTGAGAGCGTTCT
AGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig976:39418..45820+

>mRNA_A-nodosum_M_contig976.4.1 ID=mRNA_A-nodosum_M_contig976.4.1|Name=mRNA_A-nodosum_M_contig976.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1821bp|location=Sequence derived from alignment at A-nodosum_M_contig976:39418..45820+ (Ascophyllum nodosum dioecious)
ATGCCTCTCGTATCGAACGGAGGGCAGCAGGTAGCTATACCGGTCTGTGG
AGGTGATGCTTGTACCACAATCGACAACCATTTAAAAACTAAGCAAACAC
GATCTTCGAGAATACGGGTTGCTAGTGAAGCTCAAGTGAAGTACTCGCGT
AAGCTCCCACGATCGTCCTCATCAGGGTCACCTACGAGTGCTGTCAGGCG
GTCTAAGGTTTCCGGCAAAAGGAGAAGGAAGTATACCAACCCGACTACTA
ATGCTGCAGATGCTTCTGCTAGTGGTGATTTCGCCGACACGATGGCGGAG
GAAGAACCAAGCTACCCTCCAAGCCACACGCCCGTGGGAAGGGATTTTCA
AGCGGACATTCCCGACTTCCTGTCCTATGAAGAAAGGAACCGGGTATGTA
CAGGAACCAGCGCTCGAATGGTGTGGCGAAGTATCCGTGACTGGGATCCA
CAATCTCGCGGTATGCTGGCTGAGTACCTACACGCTGCCAAAGAGGTGGT
TCGGGCAAAGCAAGCACGTCCGGGCGTTGCTGTTCACGTACGACTGGGTG
ATATCTCCATCGGCGTTGACCAAGAATATGGTCAAATAGACAGCATTGAC
CGCGTCGGCAGCTATGCCGTCTGGGCCGTCACAGCTGACCGCGAGACTTG
TGATGTTGTAAGAGTAGCATGCTCGGAAATGGCCCAGACTGAGGTCCTTA
GGTCTGTCATCCAAAGAGTACAGTGCGAGGAGGAGGCCTTGGCTGCCTTG
GTGAAAACTCGGTGCATTCTCGATAACTTTCAGCCAGCATTGGATCTTCT
TGCCAAAACTTCGTCGGGTCCTCAGAGCGTGGAACAATGGACGCTCAACC
AGGTACGAACGCTCGAGAAGGCCCTTCATGACGAGTTTGATCCCAAGCGG
CGTCTTCATGGCTGGGCCAGACCAGGAATATCCATGGATCGCGAGGATTT
CATCGATCTTACTAAAGTTAGCAAGCGTGTTCCTGGCAAGACCCCTGCAC
AGGTCCTGGCATTCTACTACAAGTACCTTGCGGCCGCTGAGCCACTGATC
GATGTGGTATATGGACCCAAGGCTGCTGAAGCTCGTCGACAGGAGAAGAT
ACCCAAGAACTGTGAAGCCACCAAGCAATACTATTTGAGTGGTGGCCCGT
CGCGTGGTAGCAACCGCACCGCCAATATCAGAGCGGGCTCTACACAAACT
TCGGATGGGTCACAACGAGCTAATCCTGGCAGTCTGAGAGACGGTATTGG
AAGTGCAAGCGGCAACCGTCTGCCTAAGAGGAGGCTCAGTAGCTCCAAGT
CACACGTTCTTCGGCTCCCGTCTCCCCAGCCATCCAAAGAGCACATCCTG
AATGGAAGCAAGATCGACGTTGACCAATCTTCCGCCGCAGACACATCCGT
AGGTCACGTGGGCTATGAGAAAGCTGAGTCACCCTTATGCCAGGCCACGT
TTGGGAAATATGGCTCCAGTGCTGGAAAATGTGGCTCGGGTCTCACTTCC
CCTAATCTACCTTTACCCCGGAGAATCAGGTCAAGCCACGCTGTGGACGG
CATCACTTCTGTCGGTTCCGGTCCTACGGAAGGACCATTTGACAGAACTA
GCGATGATGATGAAGACGGTCATTGTGCTCTGAATAAGCCAACGTCCAGA
GCTCATGCGGTAATTAACGATGACGTCGATTGCAACGCCGATGGCGGTGG
GGTTCGTCACGCTGTCATCCAACATGGGAGGAGCTGGGTACAATTCAACC
GACAGCTCTCCGGCCCGTCCTCCTGTTGCCGAGATCTTCGAGTTGCAAGA
TATGGACGAAGAAGCACGTAG
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