mRNA_A-nodosum_M_contig9757.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9757.1.1
Unique NamemRNA_A-nodosum_M_contig9757.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9757.1.1 vs. uniprot
Match: D8LF69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF69_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 3.030e-17
Identity = 48/83 (57.83%), Postives = 52/83 (62.65%), Query Frame = 1
Query:    1 MLRSAVSKVAPLALRTVLRAAAPRTAVVATAQRFNSTAPPAKEGEEE-IVKVVLADSLEWTLSSPPPIHQFDEPPIIVEIDEA 246
            MLR AVSKVA +ALR  + AAAPR                        +VKVVLADSLEW LSSPPPIHQFDEPPI+VEI EA
Sbjct:    1 MLRFAVSKVATVALRPAVSAAAPRAVXXXXXXXXXXXXXXXXXXXXXXVVKVVLADSLEWALSSPPPIHQFDEPPIVVEIAEA 83          
BLAST of mRNA_A-nodosum_M_contig9757.1.1 vs. uniprot
Match: A0A7S2WGT9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WGT9_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.860e-11
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 1
Query:    1 MLRSAVSKVAPLALRTVLRAAAPRTAVVATAQRFNSTAPPAKEGEEEIVKVVLADSLEWTLSSPPPIHQFDEPPIIVEID 240
            ML SAV   A  A R V   A P+T  +      N T     EGE  IV +V  DSLEWTLSSPPP+HQF+EPP+IVE+D
Sbjct:    1 MLASAVRSTARSAARRVAFTA-PKTTSIRCMSSINIT-----EGENVIVPLVT-DSLEWTLSSPPPLHQFEEPPLIVEVD 73          
BLAST of mRNA_A-nodosum_M_contig9757.1.1 vs. uniprot
Match: A0A4D9CUY8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUY8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.390e-10
Identity = 31/45 (68.89%), Postives = 35/45 (77.78%), Query Frame = 1
Query:  112 APPAKEGEEEIVKV-VLADSLEWTLSSPPPIHQFDEPPIIVEIDE 243
            AP A+E     VKV ++ DSLEWTLSSPPP+HQFDEPPIIVE  E
Sbjct:   78 APTAEEYSSGTVKVPIVVDSLEWTLSSPPPLHQFDEPPIIVEFPE 122          
BLAST of mRNA_A-nodosum_M_contig9757.1.1 vs. uniprot
Match: W7TKW3_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKW3_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.270e-10
Identity = 31/45 (68.89%), Postives = 35/45 (77.78%), Query Frame = 1
Query:  112 APPAKEGEEEIVKV-VLADSLEWTLSSPPPIHQFDEPPIIVEIDE 243
            AP A+E     VKV ++ DSLEWTLSSPPP+HQFDEPPIIVE  E
Sbjct:  121 APTAEEYSSGTVKVPIVVDSLEWTLSSPPPLHQFDEPPIIVEFPE 165          
BLAST of mRNA_A-nodosum_M_contig9757.1.1 vs. uniprot
Match: A0A835Z9C3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9C3_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.560e-10
Identity = 37/70 (52.86%), Postives = 46/70 (65.71%), Query Frame = 1
Query:   34 LALRTVLRAAAPRTAVVATAQRFNSTAPPAKE--GEEEIVKV-VLADSLEWTLSSPPPIHQFDEPPIIVE 234
            +A RT  R A+   + +A       +APP+K    + EIV V  + DSLEWTLSSPPPIHQF+EPPIIVE
Sbjct:    4 VAARTFARPASQHMSRIAVRALGTPSAPPSKAEVADPEIVVVDEVFDSLEWTLSSPPPIHQFEEPPIIVE 73          
BLAST of mRNA_A-nodosum_M_contig9757.1.1 vs. uniprot
Match: A0A7S4NEF5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NEF5_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 5.060e-10
Identity = 42/79 (53.16%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    1 MLRSAVSKVA-PLALRTVLRAAAPRTAVVATAQRFNSTAPPAKEGEEEIVKVVLADSLEWTLSSPPPIHQFDEPPIIVE 234
            ML +A+ + A P ALR  + ++AP+    AT  R  ST P   EGE  +V ++  DSLEWTLSSPPP+HQF EPPIIVE
Sbjct:   41 MLSNAIRQAARPAALR--IASSAPK----ATVARAFSTLP---EGENVVVPLIT-DSLEWTLSSPPPLHQFTEPPIIVE 109          
BLAST of mRNA_A-nodosum_M_contig9757.1.1 vs. uniprot
Match: A0A7S4NDT8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NDT8_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.690e-9
Identity = 42/79 (53.16%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    1 MLRSAVSKVA-PLALRTVLRAAAPRTAVVATAQRFNSTAPPAKEGEEEIVKVVLADSLEWTLSSPPPIHQFDEPPIIVE 234
            ML +A+ + A P ALR  + ++AP+    AT  R  ST P   EGE  +V ++  DSLEWTLSSPPP+HQF EPPIIVE
Sbjct:   41 MLSNAIRQAARPAALR--IASSAPK----ATVARAFSTLP---EGENVVVPLIT-DSLEWTLSSPPPLHQFTEPPIIVE 109          
BLAST of mRNA_A-nodosum_M_contig9757.1.1 vs. uniprot
Match: A0A7S1H457_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H457_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.780e-9
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 1
Query:  127 EGEEEIVKVVLADSLEWTLSSPPPIHQFDEPPIIVEID 240
            +G   +V  ++ADSLEWTLSSPPP+HQF+EPP+IVEI+
Sbjct:   43 DGGGNVVVPLIADSLEWTLSSPPPLHQFEEPPLIVEIE 80          
BLAST of mRNA_A-nodosum_M_contig9757.1.1 vs. uniprot
Match: A0A6U3NUB7_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3NUB7_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 4.740e-9
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 1
Query:   97 RFNSTAPPAKEGEEEIVKVVLADSLEWTLSSPPPIHQFDEPPIIVEID 240
            RF+S +    EGE  +V ++  DSLEWTLSSPPP+HQF+EPP+IVE++
Sbjct:   29 RFSSVSM--SEGENVVVPLIT-DSLEWTLSSPPPLHQFEEPPLIVEVE 73          
BLAST of mRNA_A-nodosum_M_contig9757.1.1 vs. uniprot
Match: A0A7S0GIJ8_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GIJ8_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.670e-8
Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = 1
Query:  142 IVKVVLADSLEWTLSSPPPIHQFDEPPIIVEID 240
            +V  ++ DSLEWTLSSPPP+HQFDEPP++VE D
Sbjct:   36 VVVPIIVDSLEWTLSSPPPLHQFDEPPLMVETD 68          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9757.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF69_ECTSI3.030e-1757.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2WGT9_9STRA2.860e-1152.50Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A4D9CUY8_9STRA1.390e-1068.89Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TKW3_9STRA3.270e-1068.89Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
A0A835Z9C3_9STRA3.560e-1052.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4NEF5_9STRA5.060e-1053.16Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S4NDT8_9STRA1.690e-953.16Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1H457_9STRA2.780e-965.79Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A6U3NUB7_9STRA4.740e-958.33Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S0GIJ8_9STRA1.670e-869.70Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9757contigA-nodosum_M_contig9757:2922..3170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0T185
Model size249
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorymitochondrion
Exons1
Evalue1.01e-08
EggNOG OGs2E0D1@1|root,2S7TN@2759|Eukaryota,2XCGQ@2836|Bacillariophyta
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_001880.1
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870503.9792666-CDS-A-nodosum_M_contig9757:2921..31701680870503.9792666-CDS-A-nodosum_M_contig9757:2921..3170Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9757 2922..3170 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9757.1.1prot_A-nodosum_M_contig9757.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9757 2922..3170 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9757.1.1

>prot_A-nodosum_M_contig9757.1.1 ID=prot_A-nodosum_M_contig9757.1.1|Name=mRNA_A-nodosum_M_contig9757.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=83bp
MLRSAVSKVAPLALRTVLRAAAPRTAVVATAQRFNSTAPPAKEGEEEIVK
VVLADSLEWTLSSPPPIHQFDEPPIIVEIDEA*
back to top

mRNA from alignment at A-nodosum_M_contig9757:2922..3170+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9757.1.1 ID=mRNA_A-nodosum_M_contig9757.1.1|Name=mRNA_A-nodosum_M_contig9757.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=249bp|location=Sequence derived from alignment at A-nodosum_M_contig9757:2922..3170+ (Ascophyllum nodosum dioecious)
ATGCTACGCTCTGCTGTATCGAAGGTTGCACCCTTGGCGCTCAGGACCGT CCTTAGAGCCGCCGCCCCTCGCACCGCTGTGGTGGCAACGGCCCAGCGCT TCAACAGCACCGCACCGCCGGCCAAGGAGGGAGAGGAGGAGATCGTGAAG GTGGTGCTCGCCGATTCGCTAGAGTGGACCCTCTCAAGCCCACCGCCGAT CCACCAGTTCGACGAGCCTCCGATCATCGTCGAGATCGACGAGGCGTAA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig9757:2922..3170+

>mRNA_A-nodosum_M_contig9757.1.1 ID=mRNA_A-nodosum_M_contig9757.1.1|Name=mRNA_A-nodosum_M_contig9757.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=249bp|location=Sequence derived from alignment at A-nodosum_M_contig9757:2922..3170+ (Ascophyllum nodosum dioecious)
ATGCTACGCTCTGCTGTATCGAAGGTTGCACCCTTGGCGCTCAGGACCGT
CCTTAGAGCCGCCGCCCCTCGCACCGCTGTGGTGGCAACGGCCCAGCGCT
TCAACAGCACCGCACCGCCGGCCAAGGAGGGAGAGGAGGAGATCGTGAAG
GTGGTGCTCGCCGATTCGCTAGAGTGGACCCTCTCAAGCCCACCGCCGAT
CCACCAGTTCGACGAGCCTCCGATCATCGTCGAGATCGACGAGGCGTAA
back to top