mRNA_A-nodosum_M_contig9742.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9742.1.1
Unique NamemRNA_A-nodosum_M_contig9742.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9742.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9742contigA-nodosum_M_contig9742:10709..11996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1061
Hectar predicted targeting categoryother localisation
Exons3
Cds size606
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870503.101787-CDS-A-nodosum_M_contig9742:10708..107851680870503.101787-CDS-A-nodosum_M_contig9742:10708..10785Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9742 10709..10785 -
1680870503.1132102-CDS-A-nodosum_M_contig9742:10899..112081680870503.1132102-CDS-A-nodosum_M_contig9742:10899..11208Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9742 10900..11208 -
1680870503.1265774-CDS-A-nodosum_M_contig9742:11322..115421680870503.1265774-CDS-A-nodosum_M_contig9742:11322..11542Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9742 11323..11542 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870503.2012014-UTR-A-nodosum_M_contig9742:11542..119961680870503.2012014-UTR-A-nodosum_M_contig9742:11542..11996Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9742 11543..11996 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9742.1.1prot_A-nodosum_M_contig9742.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9742 10709..11542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9742.1.1

>prot_A-nodosum_M_contig9742.1.1 ID=prot_A-nodosum_M_contig9742.1.1|Name=mRNA_A-nodosum_M_contig9742.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=202bp
MPEYWVQHASDGMVNTNRRKCRAEGCGKRPSFGVAGTKTVEYCAQHASDG
MVNVCSRKCRTEGCGKQPSYGVAGTKTAEYCAQHAPDGMVDVRSRKCRTE
GCGKKPSYGVAGTKTAEYCCQHAPDGMVDVRSRKCRTEGCGKKPSFGVAG
TKTAEYCCQHAPDRMVDVYNRKCRTEGCGKKPSYGVAGTKTAEYCCQHAP
DR
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mRNA from alignment at A-nodosum_M_contig9742:10709..11996-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9742.1.1 ID=mRNA_A-nodosum_M_contig9742.1.1|Name=mRNA_A-nodosum_M_contig9742.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1288bp|location=Sequence derived from alignment at A-nodosum_M_contig9742:10709..11996- (Ascophyllum nodosum dioecious)
AGAGGTGTTGCAATGTTTCTGGACCGTTCCTGGCCAATCAGGGGCGGAGC
TGCCGATATTTATATGCCCTTAATAACCATATGACGAACCGCAACAAAAA
AAATCATATAAATGAGGTGTTCTATTCCTTATAGGAAAAGGGGGCAGGGT
TATAGATGTCTGTAAAATCAAAACATATGCCAAGTCCACATTCGAACTGA
GCTACCTGCACGCGGAAGAAGCGCGCGTTACGCGCGCGAGTTTAATTTCG
CGAAGTGTCACGGTGAGGCAGATTCAGGAATGCTCCGCGGTAGTGCTGTG
GGCAACACGCCAAGGACGGGATGTTCTTCTTCTCCAACAGCTGAAGTCTG
TGGCAAAATTCCGGCGTTCGAAATTGAAGGCAAGTAATTTGCGGACTGCT
GCGAATAGCACGCCCCGGACGGGATAGCCGTCTTTCCGAGTGGCCAGCAC
AAGAATGCCAGAGTACTGGGTACAGCACGCATCGGACGGGATGGTCAACA
CCAATAGAAGGAAGTGCAGAGCCGAAGGCTGTGGAAAGAGGCCATCGTTC
GGAGTTGCAGGTACAAAAACTGTGGAGTACTGTGCACAGCACGCATCGGA
CGGAATGGTCAACGTCTGCAGCAGGAAGTGCAGAACCGAAGGCTGCGGCA
AGCAACCGTCGTATGGAGTGGCAGGTACAAAAACTGCGGAGTACTGTTGT
CAGCACGCACCGGACGGGGTGGTCAGCGTCTACAGCAGGAAGTGCAGAAC
TAAAGGCTGCGGCAAGCAACCGTCGTATGGAATGGCAGGTACGAAAACTG
CGGAGTACTGTGCTCAGCACGCACCGGATGGGATGGTCGACGTCCGCAGC
AGAAAGTGCAGAACCGAAGGATGCGGCAAGAAGCCGTCGTATGGAGTTGC
AGGTACAAAAACTGCGGAGTACTGTTGTCAGCACGCACCGGACGGGATGG
TCGACGTCCGCAGCAGGAAGTGCAGAACCGAAGGCTGTGGCAAGAAGCCG
TCGTTTGGAGTGGCAGGTACAAAAACTGCGGAGTACTGTTGTCAGCACGC
ACCGGACAGGATGGTCGACGTCTACAATAGGAAGTGCAGAACTGAAGGCT
GCGGCAAGCATCCGTCGTACGGAGCGGAAGGTACGAAAACTGCGGAGTAC
TGTGCTCAGCACGCACCGAATGGGATGGTCCATGTCCGCAGCAGAAAGTG
CAGAACCGAAGGCTGCGGCAAGAAGCCGTCGTATGGAGTGGCAGGTACGA
AAACTGCGGAGTACTGTTGTCAGCACGCACCGGACAGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9742:10709..11996-

>mRNA_A-nodosum_M_contig9742.1.1 ID=mRNA_A-nodosum_M_contig9742.1.1|Name=mRNA_A-nodosum_M_contig9742.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at A-nodosum_M_contig9742:10709..11996- (Ascophyllum nodosum dioecious)
ATGCCAGAGTACTGGGTACAGCACGCATCGGACGGGATGGTCAACACCAA
TAGAAGGAAGTGCAGAGCCGAAGGCTGTGGAAAGAGGCCATCGTTCGGAG
TTGCAGGTACAAAAACTGTGGAGTACTGTGCACAGCACGCATCGGACGGA
ATGGTCAACGTCTGCAGCAGGAAGTGCAGAACCGAAGGCTGCGGCAAGCA
ACCGTCGTATGGAGTGGCAGGTACGAAAACTGCGGAGTACTGTGCTCAGC
ACGCACCGGATGGGATGGTCGACGTCCGCAGCAGAAAGTGCAGAACCGAA
GGATGCGGCAAGAAGCCGTCGTATGGAGTTGCAGGTACAAAAACTGCGGA
GTACTGTTGTCAGCACGCACCGGACGGGATGGTCGACGTCCGCAGCAGGA
AGTGCAGAACCGAAGGCTGTGGCAAGAAGCCGTCGTTTGGAGTGGCAGGT
ACAAAAACTGCGGAGTACTGTTGTCAGCACGCACCGGACAGGATGGTCGA
CGTCTACAATAGGAAGTGCAGAACTGAAGGCTGCGGCAAGAAGCCGTCGT
ATGGAGTGGCAGGTACGAAAACTGCGGAGTACTGTTGTCAGCACGCACCG
GACAGG
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