mRNA_A-nodosum_M_contig972.29.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig972.29.1
Unique NamemRNA_A-nodosum_M_contig972.29.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig972.29.1 vs. uniprot
Match: A0A6H5KLE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLE3_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.080e-9
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   40 QPRLIMPLSVEPSKPRLIYDARRLNAACRHVRFTLDSVGSLAALGWEGAIKV 195
            +P L++PL VEP KPRLI+DAR LN  C H  F++D VG +A   W+GA +V
Sbjct:  110 KPHLVLPLGVEPKKPRLIWDARWLNLMCLHSPFSMDGVGKVAQCAWQGAHQV 161
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BLAST of mRNA_A-nodosum_M_contig972.29.1 vs. uniprot
Match: A0A6H5KRN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRN9_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.100e-9
Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    7 FEEVRTSDGPSQPRLIMPLSVEPSKPRLIYDARRLNAACRHVRFTLDSVGSLAALGWEG 183
            + +V++S GP +PR+IM LSVE SKPRLIYDAR LN+  R + F +D+V  +A++   G
Sbjct:  185 WADVKSSTGPVRPRMIMALSVETSKPRLIYDARPLNSCTRKIPFAMDTVARVASVASSG 243
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BLAST of mRNA_A-nodosum_M_contig972.29.1 vs. uniprot
Match: A0A6H5JIS8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS8_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.060e-6
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    7 FEEVRTSDGPSQPRLIMPLSVEPSKPRLIYDARRLNAACRHVRFTLDSVGSLA 165
            + +V+   GP +PRLIM LSVE +KPRLIYDAR LN   + + F++D+V  +A
Sbjct:   91 WSDVKGPAGPVRPRLIMALSVEETKPRLIYDARPLNQFFKRMPFSMDTVARVA 143
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig972.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KLE3_9PHAE1.080e-953.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRN9_9PHAE1.100e-950.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIS8_9PHAE1.060e-650.94Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig972contigA-nodosum_M_contig972:211036..211295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size260
Hectar predicted targeting categoryother localisation
Exons1
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870498.0139034-CDS-A-nodosum_M_contig972:211037..2112951680870498.0139034-CDS-A-nodosum_M_contig972:211037..211295Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig972 211038..211295 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig972.29.1prot_A-nodosum_M_contig972.29.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig972 211038..211295 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig972.29.1

>prot_A-nodosum_M_contig972.29.1 ID=prot_A-nodosum_M_contig972.29.1|Name=mRNA_A-nodosum_M_contig972.29.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=86bp
VPFEEVRTSDGPSQPRLIMPLSVEPSKPRLIYDARRLNAACRHVRFTLDS
VGSLAALGWEGAIKVHSMISQVSIMSFYTQHRGLCL
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mRNA from alignment at A-nodosum_M_contig972:211036..211295-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig972.29.1 ID=mRNA_A-nodosum_M_contig972.29.1|Name=mRNA_A-nodosum_M_contig972.29.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=260bp|location=Sequence derived from alignment at A-nodosum_M_contig972:211036..211295- (Ascophyllum nodosum dioecious)
GTTCCGTTCGAGGAGGTTCGTACGAGCGACGGCCCGTCGCAGCCGAGACT
CATTATGCCATTAAGTGTAGAGCCGTCGAAGCCGCGCCTCATCTACGATG
CTCGCCGCCTAAACGCAGCATGTCGGCATGTCCGTTTCACCTTGGATTCA
GTGGGTTCTCTCGCCGCACTGGGGTGGGAGGGTGCTATCAAGGTTCACTC
GATGATAAGTCAGGTTTCCATCATGTCCTTTTACACCCAGCATCGTGGCC
TTTGTTTGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig972:211036..211295-

>mRNA_A-nodosum_M_contig972.29.1 ID=mRNA_A-nodosum_M_contig972.29.1|Name=mRNA_A-nodosum_M_contig972.29.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at A-nodosum_M_contig972:211036..211295- (Ascophyllum nodosum dioecious)
GTTCCGTTCGAGGAGGTTCGTACGAGCGACGGCCCGTCGCAGCCGAGACT
CATTATGCCATTAAGTGTAGAGCCGTCGAAGCCGCGCCTCATCTACGATG
CTCGCCGCCTAAACGCAGCATGTCGGCATGTCCGTTTCACCTTGGATTCA
GTGGGTTCTCTCGCCGCACTGGGGTGGGAGGGTGCTATCAAGGTTCACTC
GATGATAAGTCAGGTTTCCATCATGTCCTTTTACACCCAGCATCGTGGCC
TTTGTTTG
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