mRNA_A-nodosum_M_contig972.27.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig972.27.1
Unique NamemRNA_A-nodosum_M_contig972.27.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig972.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig972contigA-nodosum_M_contig972:196401..197512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size273
Hectar predicted targeting categoryother localisation
Exons2
Cds size192
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870496.932003-UTR-A-nodosum_M_contig972:196400..1964801680870496.932003-UTR-A-nodosum_M_contig972:196400..196480Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig972 196401..196480 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870496.9437075-CDS-A-nodosum_M_contig972:196480..1965121680870496.9437075-CDS-A-nodosum_M_contig972:196480..196512Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig972 196481..196512 -
1680870496.9597728-CDS-A-nodosum_M_contig972:197352..1975121680870496.9597728-CDS-A-nodosum_M_contig972:197352..197512Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig972 197353..197512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig972.27.1prot_A-nodosum_M_contig972.27.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig972 196481..197512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig972.27.1

>prot_A-nodosum_M_contig972.27.1 ID=prot_A-nodosum_M_contig972.27.1|Name=mRNA_A-nodosum_M_contig972.27.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=64bp
SWDLNAGTRSTETESFRSARVVRRRATYAERTERQRLRDAHERRMAEGAS
PAAVLADAVTRLA*
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mRNA from alignment at A-nodosum_M_contig972:196401..197512-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig972.27.1 ID=mRNA_A-nodosum_M_contig972.27.1|Name=mRNA_A-nodosum_M_contig972.27.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1112bp|location=Sequence derived from alignment at A-nodosum_M_contig972:196401..197512- (Ascophyllum nodosum dioecious)
TCGTGGGATTTGAACGCCGGCACAAGGTCAACGGAAACTGAAAGTTTTAG
GTCGGCTCGTGTGGTTAGAAGACGGGCTACGTACGCCGAGCGAACGGAAC
GACAGCGCCTGCGTGATGCTCACGAAAGACGTATGGCGGAAGGCGCTAGT
CCTGCTGCAGGTGACAGCACCAGCAATTGGAAAACAAGGTCCTGTTGAGA
GAGCCTTCATTAGTTTGTGCCTTCAGTGTACGTAGACGAACTGCTGTGCT
ATTATAAAACCAAGAGAATTCTATTTGCGATATTTGTTCAAGTGTTCCTG
CCATGTTATACTATCTACCAATGTTTTCACCGGTACTTTCAACATGCCCA
CTTCATACCAATAGTGGGTGTGGGAAAGAGAGGCGAATATTTATTGGTCC
ATGGTGATTTGCCAAGGCAGCACCCGTTTGGAACTACCTTGAGAGGTTTA
CTGGCCCTGTGCCGGCGGACTCTCGGCAGTGAACGCCATCGGTACGCAAT
TGCGTGACCCGATATACTCGGGACTGACTCGATGGCGTATGGCGGTTTCA
TAAATGGACGCCGCCGCGGAACTCGGGAGGAATCCCGTAAGTAAGCACCA
GATTCAGCCTGAGTATGGGGATGAGCAGGCGGACGCGGGACGGGACGGCT
GAACCCGTCTCGCGAGACCAATTTCTCAGGCACGCACGGGGACAGGGGAA
TATTATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCAACCTTACCC
GGTTGATCCATACTCTGCTACATGTGATGACCATACATACATACATACAT
ACTACGTACGTCTCTCCTGCCCACTGCATTCGTTTGTGCCTTAAGTGTAC
GTAGACGAACTGCTGTGCTATTATAAAAACAAGAGAATTCTATTTGCGAT
ATTTGTTCGTCAAGTGTTCCTGCCATGCTATACTATCTACTCATGTTTTT
TATATTACGTACGTCTCTCCTGCCCACTGCACTGTGCGTACGTTTCGTAG
TCCTTGCAGACGCGGTAACACGGCTAGCTTGACAACAGCACCAGGCAAAT
GTTAATGCAGCTGCGGAGGCGGCGGCATTGCGAGCTATGCATGAAGAATC
GGCACGACTGGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig972:196401..197512-

>mRNA_A-nodosum_M_contig972.27.1 ID=mRNA_A-nodosum_M_contig972.27.1|Name=mRNA_A-nodosum_M_contig972.27.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=192bp|location=Sequence derived from alignment at A-nodosum_M_contig972:196401..197512- (Ascophyllum nodosum dioecious)
TCGTGGGATTTGAACGCCGGCACAAGGTCAACGGAAACTGAAAGTTTTAG
GTCGGCTCGTGTGGTTAGAAGACGGGCTACGTACGCCGAGCGAACGGAAC
GACAGCGCCTGCGTGATGCTCACGAAAGACGTATGGCGGAAGGCGCTAGT
CCTGCTGCAGTCCTTGCAGACGCGGTAACACGGCTAGCTTGA
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