mRNA_A-nodosum_M_contig972.15.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig972.15.1
Unique NamemRNA_A-nodosum_M_contig972.15.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig972.15.1 vs. uniprot
Match: D8LJM2_ECTSI (PGPS/D6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJM2_ECTSI)

HSP 1 Score: 346 bits (887), Expect = 9.780e-119
Identity = 172/226 (76.11%), Postives = 193/226 (85.40%), Query Frame = 1
Query:    1 MNIFRFLGDMSHTASILVLLLKLRASKSAAGVSLKTQELFLVVFATRYLDLVTHFFSLYNSIMKVLYISLTSYIVYMIREQMPIKATYDKTQDSFLHWKFAVAPCAVVGFIVHCWDTRHSWKSFLSITNYGWVFSEVLEPLAIIPQLMVLQRYREVENLTGHYVFLLGAYRVLYILNWVYRAFYEFGYKHHPLLYFAGMVQTLLYVDFFYYYILSKYYGGRLSLPS 678
            MNIFR  GDMSHTASIL+LLLKLRASKSAAG+SLKTQELFLVVF TRY+DL   F S YNSIMKVLYI+LTS I+YMIRE +PIKATYDK+QDSFLHW+FAVAPCA +G ++H W        F S+ N+ W FSEVLEP AI+PQLMVLQRYREVENLTGHYVFLLGAYR LYI+NWVYRA YE GY+HH L+Y AG+VQTLLY DFFYYY +SKYYGGR+SLP+
Sbjct:    1 MNIFRLAGDMSHTASILMLLLKLRASKSAAGISLKTQELFLVVFVTRYVDLFFRFISWYNSIMKVLYITLTSLIIYMIREHIPIKATYDKSQDSFLHWQFAVAPCAALGLLIHSWSWWTVSMPFSSLINFFWTFSEVLEPFAIVPQLMVLQRYREVENLTGHYVFLLGAYRSLYIVNWVYRAHYEAGYQHHVLVYIAGLVQTLLYADFFYYYAISKYYGGRMSLPA 226          
BLAST of mRNA_A-nodosum_M_contig972.15.1 vs. uniprot
Match: A0A835Z6E1_9STRA (ER lumen protein retaining receptor-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6E1_9STRA)

HSP 1 Score: 289 bits (740), Expect = 1.810e-96
Identity = 148/229 (64.63%), Postives = 182/229 (79.48%), Query Frame = 1
Query:    1 MNIFRFLGDMSHTASILVLLLKLRASKSAAGVSLKTQELFLVVFATRYLDLVTHFFSLYNSIMKVLYISLTSYIVYMIREQMPIKATYDKTQDSFLHWKFAVAPCAVVG---FIVHCWDTRHSWKSFLSITNYGWVFSEVLEPLAIIPQLMVLQRYREVENLTGHYVFLLGAYRVLYILNWVYRAFYEFGYKHHPLLYFAGMVQTLLYVDFFYYYILSKYYGGRLSLPS 678
            MNIFR +GD+ H ASIL+LLLKLRASK+A+G+SLKTQELFL VF  RYLDL T F+S+YNS+MKVLYI+LT+ I++M+R Q PI+ TYD +QD+FLH K+AVAPCA +     +V  +D R          +  W FS  LE +AI+PQL+VLQRYREVENLTGHY+F LGAYR LYILNW+YR+F+E GYKHH ++YFAG+VQT LYVDFFYYY +SKY GG+ SLPS
Sbjct:    1 MNIFRLVGDLCHLASILLLLLKLRASKNASGISLKTQELFLAVFVCRYLDLFTTFYSVYNSVMKVLYIALTALIIHMMRAQSPIRGTYDASQDTFLHVKYAVAPCAALAALTMLVQGFDVR----------DLFWNFSIYLEAIAIVPQLIVLQRYREVENLTGHYIFFLGAYRALYILNWIYRSFHERGYKHHYVVYFAGIVQTALYVDFFYYYAISKYRGGKFSLPS 219          
BLAST of mRNA_A-nodosum_M_contig972.15.1 vs. uniprot
Match: F0YI66_AURAN (Uncharacterized protein n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI66_AURAN)

HSP 1 Score: 288 bits (736), Expect = 7.600e-96
Identity = 148/226 (65.49%), Postives = 180/226 (79.65%), Query Frame = 1
Query:    1 MNIFRFLGDMSHTASILVLLLKLRASKSAAGVSLKTQELFLVVFATRYLDLVTHFFSLYNSIMKVLYISLTSYIVYMIREQMPIKATYDKTQDSFLHWKFAVAPCAVVGFIVHCWDTRHSWKSFLSITNYGWVFSEVLEPLAIIPQLMVLQRYREVENLTGHYVFLLGAYRVLYILNWVYRAFYEFGYKHHPLLYFAGMVQTLLYVDFFYYYILSKYYGGRLSLPS 678
            MN+FRF GDMSH  SI+VL+L+LR SKSA G+SLKTQELFL+VF TRYLDL T F+S+YNS MKV YI+ T+ I+YMIR + P K+ YDK+QDSFLH+KFAVAPCA++  +  C   R      L+  +  W FS  LE LAI+PQL VLQRYREVENLTGHYVF LGAYR LYILNWVYR++YE  Y+H+ L+Y +G +QT LYVDFFYYYI+SKYYGG+L+LP+
Sbjct:    1 MNLFRFAGDMSHVVSIIVLILRLRVSKSAVGISLKTQELFLIVFMTRYLDLFTTFYSMYNSFMKVAYITATASIIYMIRFKEPYKSKYDKSQDSFLHFKFAVAPCAMLA-LFSCLIKRE-----LNPVDVLWTFSIFLEALAIVPQLFVLQRYREVENLTGHYVFFLGAYRFLYILNWVYRSYYEPFYRHNWLVYISGAIQTALYVDFFYYYIVSKYYGGKLTLPT 220          
BLAST of mRNA_A-nodosum_M_contig972.15.1 vs. uniprot
Match: A0A7S3ZPQ8_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZPQ8_9STRA)

HSP 1 Score: 288 bits (737), Expect = 6.210e-95
Identity = 153/226 (67.70%), Postives = 178/226 (78.76%), Query Frame = 1
Query:    1 MNIFRFLGDMSHTASILVLLLKLRASKSAAGVSLKTQELFLVVFATRYLDLVTHFFSLYNSIMKVLYISLTSYIVYMIREQMPIKATYDKTQDSFLHWKFAVAPCAVVGFIVHCWDTRHSWKSFLSITNYGWVFSEVLEPLAIIPQLMVLQRYREVENLTGHYVFLLGAYRVLYILNWVYRAFYEFGYKHHPLLYFAGMVQTLLYVDFFYYYILSKYYGGRLSLPS 678
            MNIFRF GDMSH  SILVLLL+LR+SKSA G+SLKTQELFL+VF TRYLDL T F+SLYNS MKV YI+ T+YI++MIR Q P K+ YD +QDSFLH KFAVAPCA +     C       K  LS  +  W FS  LE LAI+PQL VLQRYREVENLTGHYVF LGAYR LYILNWVYR++YE  Y+H+ L+Y +G VQT LYVDFFYYY++SKYYGG+L+LP+
Sbjct:   74 MNIFRFAGDMSHVVSILVLLLRLRSSKSAVGISLKTQELFLIVFVTRYLDLFTTFYSLYNSFMKVAYIASTTYIIWMIRFQEPYKSKYDASQDSFLHIKFAVAPCAGLALFA-CLV-----KGELSPIDILWTFSIFLEALAIVPQLFVLQRYREVENLTGHYVFFLGAYRGLYILNWVYRSYYEQFYRHNWLVYVSGAVQTALYVDFFYYYVVSKYYGGKLTLPT 293          
BLAST of mRNA_A-nodosum_M_contig972.15.1 vs. uniprot
Match: A0A1Z5KJM8_FISSO (ER lumen protein retaining receptor n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJM8_FISSO)

HSP 1 Score: 279 bits (713), Expect = 3.130e-92
Identity = 142/226 (62.83%), Postives = 178/226 (78.76%), Query Frame = 1
Query:    1 MNIFRFLGDMSHTASILVLLLKLRASKSAAGVSLKTQELFLVVFATRYLDLVTHFFSLYNSIMKVLYISLTSYIVYMIREQMPIKATYDKTQDSFLHWKFAVAPCAVVGFIVHCWDTRHSWKSFLSITNYGWVFSEVLEPLAIIPQLMVLQRYREVENLTGHYVFLLGAYRVLYILNWVYRAFYEFGYKHHPLLYFAGMVQTLLYVDFFYYYILSKYYGGRLSLPS 678
            MNIFR  GDMSH  SILVLLL+LR +K+A G+S++T ELFL+VF TRYLDL T F+SLYNSIMK+LYI  T+ I+Y I+ Q PIK+TYDK+QDSFL+W+FAVAPCAV+  + H   +  S  SF+ +    W FS  LE +AI+PQL+VLQRYREVENLTG+Y+F +GAYR LYILNW+YRA +E  Y+HH ++Y  G++QTLLYVDFFYYY  SK  GGR +LP+
Sbjct:    3 MNIFRLAGDMSHVFSILVLLLRLRVAKNAQGISVRTHELFLIVFLTRYLDLFTTFYSLYNSIMKILYIVSTASIIYTIKFQEPIKSTYDKSQDSFLYWQFAVAPCAVLASVTHLIGSGISGFSFIELL---WTFSIYLESIAILPQLIVLQRYREVENLTGNYIFFMGAYRFLYILNWIYRANFEAHYQHHWVVYICGVLQTLLYVDFFYYYFKSKKSGGRFTLPT 225          
BLAST of mRNA_A-nodosum_M_contig972.15.1 vs. uniprot
Match: A0A7S2MV43_9STRA (ER lumen protein-retaining receptor n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MV43_9STRA)

HSP 1 Score: 278 bits (710), Expect = 8.950e-92
Identity = 142/226 (62.83%), Postives = 174/226 (76.99%), Query Frame = 1
Query:    1 MNIFRFLGDMSHTASILVLLLKLRASKSAAGVSLKTQELFLVVFATRYLDLVTHFFSLYNSIMKVLYISLTSYIVYMIREQMPIKATYDKTQDSFLHWKFAVAPCAVVGFIVHCWDTRHSWKSFLSITNYGWVFSEVLEPLAIIPQLMVLQRYREVENLTGHYVFLLGAYRVLYILNWVYRAFYEFGYKHHPLLYFAGMVQTLLYVDFFYYYILSKYYGGRLSLPS 678
            MNIFR  GDMSH  SI+VLLL+LR +K+A G+S++T ELFLVVF TRYLDL T F+SLYNS MK+LYI  T+ I+YMIR   PI +TYDK QD+FLHWKFAV PCA++  I H   +  S    +S     W FS  LE +AI+PQL+VLQRYREVENLTG+Y+F +GAYR LYILNWVYRA+YE  Y+HH ++YF G++QTLLY DFFYYY+ SK  GG+ SLP+
Sbjct:    3 MNIFRLSGDMSHVFSIIVLLLRLRVAKNAQGISVRTHELFLVVFVTRYLDLFTTFYSLYNSCMKILYIVTTAAIIYMIRFSEPICSTYDKAQDTFLHWKFAVLPCAIIATITHMIGSGLS----ISPIELLWTFSIYLESVAILPQLIVLQRYREVENLTGNYIFFMGAYRALYILNWVYRAYYEPFYQHHFVVYFCGVLQTLLYADFFYYYVKSKAKGGKFSLPT 224          
BLAST of mRNA_A-nodosum_M_contig972.15.1 vs. uniprot
Match: A0A7S1UWG6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UWG6_9STRA)

HSP 1 Score: 278 bits (711), Expect = 1.280e-91
Identity = 140/226 (61.95%), Postives = 173/226 (76.55%), Query Frame = 1
Query:    1 MNIFRFLGDMSHTASILVLLLKLRASKSAAGVSLKTQELFLVVFATRYLDLVTHFFSLYNSIMKVLYISLTSYIVYMIREQMPIKATYDKTQDSFLHWKFAVAPCAVVGFIVHCWDTRHSWKSFLSITNYGWVFSEVLEPLAIIPQLMVLQRYREVENLTGHYVFLLGAYRVLYILNWVYRAFYEFGYKHHPLLYFAGMVQTLLYVDFFYYYILSKYYGGRLSLPS 678
            MNIFR  GDMSH  SI+VLLL+LR +K+A G+S++T ELFL VF TRYLDL T F+S YNSIMK+LYI  T+ I+Y I+ Q PIK+TYDK QD+FLHWKFAVAPCA+V F+ H   +  +    + +    W FS  LE +AI+PQL+VLQRYREVENLTG++VF +GAYR LYILNW+YRA  E GYKHH ++YF G++QTLLY DFFYYY+ S   GGR  LP+
Sbjct:   23 MNIFRLAGDMSHVFSIIVLLLRLRVAKNAQGISVRTHELFLCVFVTRYLDLFTTFYSFYNSIMKILYIGSTASIIYTIKFQEPIKSTYDKAQDTFLHWKFAVAPCAIVAFLTHMIGSGIAKFELMELL---WTFSIYLESIAILPQLIVLQRYREVENLTGNFVFFMGAYRFLYILNWIYRAHTEHGYKHHWVVYFCGVLQTLLYADFFYYYVKSVRSGGRFKLPT 245          
BLAST of mRNA_A-nodosum_M_contig972.15.1 vs. uniprot
Match: B7G303_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G303_PHATC)

HSP 1 Score: 275 bits (704), Expect = 7.060e-91
Identity = 138/226 (61.06%), Postives = 173/226 (76.55%), Query Frame = 1
Query:    1 MNIFRFLGDMSHTASILVLLLKLRASKSAAGVSLKTQELFLVVFATRYLDLVTHFFSLYNSIMKVLYISLTSYIVYMIREQMPIKATYDKTQDSFLHWKFAVAPCAVVGFIVHCWDTRHSWKSFLSITNYGWVFSEVLEPLAIIPQLMVLQRYREVENLTGHYVFLLGAYRVLYILNWVYRAFYEFGYKHHPLLYFAGMVQTLLYVDFFYYYILSKYYGGRLSLPS 678
            MNIFR  GDM H  SI+VLLL+LR +K+A G+SL+T ELFL+VF TRYLDL  +FFS+YNS+MKVLYI  T+ IVY IR + PIK+TY+K+QD+FLHWKFAVAPC  +  I H   ++        +    W FS  LE +AI+PQL+VLQRYREVENLTG+Y+F +GAYR LYI+NW+YRA  E GYKHH ++YF G+VQTLLY DFFYYY+ SK  GG+ +LP+
Sbjct:    3 MNIFRLAGDMCHVFSIIVLLLRLRVAKNAQGISLRTNELFLLVFVTRYLDLFFNFFSIYNSVMKVLYIVSTASIVYTIRFKEPIKSTYEKSQDTFLHWKFAVAPCFAIALITHLIGSKR-----FDMVELLWTFSIYLESIAILPQLIVLQRYREVENLTGNYIFFMGAYRALYIVNWIYRAHTEKGYKHHWVVYFCGVVQTLLYADFFYYYLKSKSKGGKFTLPT 223          
BLAST of mRNA_A-nodosum_M_contig972.15.1 vs. uniprot
Match: A0A7R9ZM06_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZM06_9STRA)

HSP 1 Score: 275 bits (703), Expect = 4.500e-90
Identity = 137/226 (60.62%), Postives = 176/226 (77.88%), Query Frame = 1
Query:    1 MNIFRFLGDMSHTASILVLLLKLRASKSAAGVSLKTQELFLVVFATRYLDLVTHFFSLYNSIMKVLYISLTSYIVYMIREQMPIKATYDKTQDSFLHWKFAVAPCAVVGFIVHCWDTRHSWKSFLSITNYGWVFSEVLEPLAIIPQLMVLQRYREVENLTGHYVFLLGAYRVLYILNWVYRAFYEFGYKHHPLLYFAGMVQTLLYVDFFYYYILSKYYGGRLSLPS 678
            MNIFRFLGDMSH  SI+VLLL+LR +++A G+S+++ ELFL VF TRYLDL   F+S+YNS+MK++YI  T+ I+Y I+ + PIK+TYDK+QD+FLHW+FAVAPCA++ F  H        K F +I    W+FS  LE +AI+PQL+VLQRY+EVENLTG+Y+F +GAYR LYILNW+YRA  E GYKHH ++YF G++QTLLY DFFYYYI +K  G RL LP 
Sbjct:   48 MNIFRFLGDMSHLFSIIVLLLRLRVARNAQGISVRSHELFLCVFVTRYLDLFFRFYSIYNSVMKIIYIGSTASIIYTIKYKEPIKSTYDKSQDTFLHWRFAVAPCAIIAFATHM--IAKGMKGFDAI-ELLWMFSIYLEAIAILPQLIVLQRYKEVENLTGNYIFFMGAYRALYILNWIYRANTEKGYKHHWVVYFCGVLQTLLYADFFYYYIKAKARGNRLQLPQ 270          
BLAST of mRNA_A-nodosum_M_contig972.15.1 vs. uniprot
Match: A0A7S2R233_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R233_9STRA)

HSP 1 Score: 273 bits (697), Expect = 8.460e-90
Identity = 138/226 (61.06%), Postives = 171/226 (75.66%), Query Frame = 1
Query:    1 MNIFRFLGDMSHTASILVLLLKLRASKSAAGVSLKTQELFLVVFATRYLDLVTHFFSLYNSIMKVLYISLTSYIVYMIREQMPIKATYDKTQDSFLHWKFAVAPCAVVGFIVHCWDTRHSWKSFLSITNYGWVFSEVLEPLAIIPQLMVLQRYREVENLTGHYVFLLGAYRVLYILNWVYRAFYEFGYKHHPLLYFAGMVQTLLYVDFFYYYILSKYYGGRLSLPS 678
            MNIFR  GDMSH  SI+VLLL+LR +K+A G+S++T ELFLVVF TRYLDL T ++S+YNS MKVLYI  T+ I+YMIR Q PI +TYDK QD+FLHW+FAV PC  V  I H   T   +     I    W FS  LE +AI+PQL+VLQRYREVENLTG+Y+F +GAYR LYI NWVYRA++E  Y+HH ++YF G++QTLLY DFFYYY+ SK  GG+ +LP+
Sbjct:    3 MNIFRLAGDMSHVFSIIVLLLRLRVAKNAQGISVRTHELFLVVFVTRYLDLFTTYYSVYNSCMKVLYILTTAAIIYMIRFQEPICSTYDKAQDTFLHWRFAVLPCICVALITHSLGTHFRFN----IMEVLWTFSIYLEAIAILPQLIVLQRYREVENLTGNYIFFMGAYRALYIANWVYRAYHEPFYQHHYVVYFCGILQTLLYADFFYYYLTSKAKGGKFTLPT 224          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig972.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJM2_ECTSI9.780e-11976.11PGPS/D6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJM2... [more]
A0A835Z6E1_9STRA1.810e-9664.63ER lumen protein retaining receptor-domain-contain... [more]
F0YI66_AURAN7.600e-9665.49Uncharacterized protein n=2 Tax=Aureococcus anopha... [more]
A0A7S3ZPQ8_9STRA6.210e-9567.70Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A1Z5KJM8_FISSO3.130e-9262.83ER lumen protein retaining receptor n=2 Tax=Fistul... [more]
A0A7S2MV43_9STRA8.950e-9262.83ER lumen protein-retaining receptor n=1 Tax=Helico... [more]
A0A7S1UWG6_9STRA1.280e-9161.95Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
B7G303_PHATC7.060e-9161.06Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7R9ZM06_9STRA4.500e-9060.62Hypothetical protein n=2 Tax=Craspedostauros austr... [more]
A0A7S2R233_9STRA8.460e-9061.06Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig972contigA-nodosum_M_contig972:117359..122350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LJM2
Preferred nameERD2A
PFAMsER_lumen_recept
Model size681
Max annot lvl2759|Eukaryota
KEGG koko:K08235,ko:K10949
KEGG Pathwayko05110,map05110
Hectar predicted targeting categoryother localisation
GOsGO:0002218,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005801,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0010204,GO:0012505,GO:0016020,GO:0023052,GO:0031347,GO:0031349,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0080134,GO:0098827
Exons7
Evalue1.6e-119
EggNOG OGsCOG5196@1|root,KOG3106@2759|Eukaryota
Ec32 ortholog descriptionPGPS/D6
Ec32 orthologEc-17_002580.1
EC2.4.1.207
DescriptionER retention sequence binding
Cds size681
COG categoryU
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig972.15.1prot_A-nodosum_M_contig972.15.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig972 117359..122350 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870497.5208695-CDS-A-nodosum_M_contig972:117358..1174491680870497.5208695-CDS-A-nodosum_M_contig972:117358..117449Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig972 117359..117449 +
1680870497.5418012-CDS-A-nodosum_M_contig972:118650..1187411680870497.5418012-CDS-A-nodosum_M_contig972:118650..118741Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig972 118651..118741 +
1680870497.5524235-CDS-A-nodosum_M_contig972:119089..1191831680870497.5524235-CDS-A-nodosum_M_contig972:119089..119183Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig972 119090..119183 +
1680870497.5639737-CDS-A-nodosum_M_contig972:119890..1200011680870497.5639737-CDS-A-nodosum_M_contig972:119890..120001Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig972 119891..120001 +
1680870497.5748265-CDS-A-nodosum_M_contig972:120960..1210541680870497.5748265-CDS-A-nodosum_M_contig972:120960..121054Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig972 120961..121054 +
1680870497.5855827-CDS-A-nodosum_M_contig972:121489..1216521680870497.5855827-CDS-A-nodosum_M_contig972:121489..121652Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig972 121490..121652 +
1680870497.6004474-CDS-A-nodosum_M_contig972:122313..1223501680870497.6004474-CDS-A-nodosum_M_contig972:122313..122350Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig972 122314..122350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig972.15.1

>prot_A-nodosum_M_contig972.15.1 ID=prot_A-nodosum_M_contig972.15.1|Name=mRNA_A-nodosum_M_contig972.15.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=227bp
MNIFRFLGDMSHTASILVLLLKLRASKSAAGVSLKTQELFLVVFATRYLD
LVTHFFSLYNSIMKVLYISLTSYIVYMIREQMPIKATYDKTQDSFLHWKF
AVAPCAVVGFIVHCWDTRHSWKSFLSITNYGWVFSEVLEPLAIIPQLMVL
QRYREVENLTGHYVFLLGAYRVLYILNWVYRAFYEFGYKHHPLLYFAGMV
QTLLYVDFFYYYILSKYYGGRLSLPS*
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mRNA from alignment at A-nodosum_M_contig972:117359..122350+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig972.15.1 ID=mRNA_A-nodosum_M_contig972.15.1|Name=mRNA_A-nodosum_M_contig972.15.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4992bp|location=Sequence derived from alignment at A-nodosum_M_contig972:117359..122350+ (Ascophyllum nodosum dioecious)
ATGAACATCTTCCGATTTTTGGGCGACATGTCCCACACGGCCAGCATCTT GGTCCTGCTACTGAAGCTACGGGCATCGAAAAGTGCAGCAGGTGTGCAAA TAGGACTTTTTATACGCATGGATGGTAGCAATTGCTCCGCGGCGCTGCTT TTCGCTGTCGCCTATATACTGAAGTACTGAGTAATACTGTCCGACTGTTT GTTCTCGCAGGGCCCCATGTTCTTTTCTTCCCCTCTAGGACCACACGTTG CGCCGTCTTTTTTGTCACATTAAGCTAgggggGGGGGGAGGGAGAGAGAG GATTGGCTAGACCACTTGCACTTGATTGAGCGAATGTGTGATTGTGGATT TGACCGTAAGGCATAGTGTCATGTCGGGACGGGGCGATAGCGGCACAAGA AGCGAGGTCTAGCGCGAAAGATTGCCGACGACTGATGAATATCCGCACCT TTCAGGCCTCAATCTACTGCTGTATGTACAATGATTTACCTACGTTCGCG ATTATACCGCCATGAACCGATCGATCTTGAGACACGATAGCTGTAGCTGG GAATGCTTAGTCTTACAAGACATGCCTCGGATTGCCTTTCCGTGACCAGA GTTAAGTGCTCACCCTACAGCAGTTGTGCTACAGTCCACGCGACTTTGTT AAACTGTTGTAGTCAACCTACCACAACTGTAGTATTGAATATTCGACGGA GTTGCAGATCAGCATTGCCGTTACGTGCCCACGTCAACTGTACAGTATTC CTAGATCTACGTACACAGCAATGTCTGCTCTGTTGAGGTCAATAGTCCAA GCCTTACGCTAATTTCGACACAACCTCCAAACGACGAAACTGCTCGCGTA CCTCCTCAGACAGCACTCTGTGGTTGGTGCGCCCGGTACAGCAGAGCAGT ATTACTATAGCTCTACTATACTAGCATTTTCCCGACAACATTATTACTTT TGTCTACAGTGTATAATAGCAACTCTTCTTTCATCAGTACTGTCTTCGGT ATGCCCTGAAGACGAAAGGCTTCGCAATCTGGCGCTGGAATAGCGCGGTA ATTGATACAAGTACCGTGGTTGGTGTTCTAAGTACATGACGCCGTTTACC CACGGTGCGCCAACTTTGTCACAGGCATATTTTTTTAGCGTGGATGAGGC GACGAACTCCATAGCTTCGTCCACAAAAAAAAAGCCTTCCCTTTGAACAC CTCGTTTGGCCCACAGCGCACCCTCATTCCTGACCGTCCACCCCCCAATC CCCCTCCCCGACTACGTACTCCGATCGACCCGACGCCAACAGGCGTATCG CTCAAGACGCAGGAGTTATTCCTAGTGGTTTTTGCTACTCGATACCTCGA CCTCGTGACCCACTTCTTCAGCTTGTACAACAGGTAGGTTTCGTGTCCCG CGGTCGACGCTGCCGCAGTCCACACTCCACGCCAGCCACGCCAACCCCCG AAGACGTCCTCGCCAACGCACGGAGCCCGAAGACGTAAAGGATATTATTA TACAGCCCTACATAGCTGTAGCACGTCGGGAAGAAGAAAGTCAGCATTGC GGCGCAATCGAGCGATCGCCTCGCCGGAGCTGGGCGTCTGATACTCTACC GAAGCCCTCGCCTCTTGCCCTGCCTCACCCCCGTCTTTCAATGTTCCGCC CCCGCCCCCCTGTCCCGTCGCGATCGCGTATGCTTCGCTCTGCGCGCGAC TCTACGGCTGCTGACCTTTCGCTCGCCTCAGCATCATGAAGGTGCTGTAC ATCAGTCTTACCAGCTACATTGTGTACATGATCCGGGAACAGATGCCTAT CAAGGCTACCTACGACAAGACGCAGGTCGGTGGGAAGAAGAATCGATGAG GCCGGTCTATAATCGTCTCTAATACGATTGCTTTCGCGCCGATCTCTGCC GTATTAGTAATTGGTTTTACTGCGTCGCGCTTAGAAGTCGTCGGATTGAA AACCAATGTCTTCATTTCTACTTCTCTTCCCGAGTCCAATTTTGTCCTCC TGCTGCTCAGCGCGGTAAAAGCATGATGTACATACATACAGTAAACGCCA TAAGGGCCAAGTTCCCCGTGCCTAACCCCCCCCCCACCCCCATCTAACAC ACCAACAACAGTTAGAACAACAAAATGAGACGAGACTCGTTATTTGGTGA ATCGCTGAACAACCCGAGGCGTTTTGCACTGCCCATCATTTCGCGAATCG CAGACGACTTCTATATTAGATGAGTTTTTAACAATTTCCGAGGCGTTTCG GCTAAGGTTTTTCTCCTCTCCTCGTTGTGGTTAAGCTATTAATACACACC TTGTGTCGCGTACTAGGTATCTGTGTCAGCGCCCTAAAAAGACACCACCG CACCTCACCCCGCGATTCCTTCTAAAAAAATATGTTTTTTTTACGCCTTG GCTGCGCCCCAGTTGCTTCCCCGCGTCCACCCCCCTTTTTGCCAAACCGG CGGTTTAAGATCGCTCGCTTTTGACTGCTAATCGCCGCCGCCCCCGCCCC GCATCCCCACGCGGTAAACGACGTTTTCCCAGGACTCTTTCCTGCACTGG AAATTTGCCGTGGCGCCGTGCGCAGTGGTGGGGTTCATTGTTCACTGCTG GGACACAAGACATAGCTGGAAGTCTTTCCTCTCGATTACGAACGTGGGTA TCCCTTTATTTGTGCTATCATAAGTTCTAAGTACTTCCATTAATGTAATA GTAGTACATCGAGTTTCTTGATTGCTATACGAATAAACCTTTTTTTTTAA TATATCTCTTGGATGTCTCATCTCGAACCATGTTTTCGTATCAGTCCACC CGCCCTATATAGAGTAATAACTTCTGACCTTACCTTTTTTCTTTTCTTTC TCGAGATGAAAAACGTTACGTCGTTATGTATCTTTTCTTCATCTTCATGA TGAAGTCTACACACGCAATCTCTCTCTCTCTCTCTAAAGAAAAATCAGAA CGCACCTAGACCTTCTGAGCATCCCTCAGTCAGGGGGGAAAAAATGTCAA AACGTTTAGGTGGGATCATAGGCTGCGAATACAAAACTTCTTCATGGCAT TTAAACGGGTTCCCCTATGCTGTATGGTAGTACCATCGGGTCAACAGTAT AATATCGGGGAGAAGCCCACCGTTATACTGTACACGTACATTAATCGCCA CGCAGAGACACCAGGAAAACAGCGAAGACAAAATAGTACATAATCAAACA TGGTAGCAATAATATACTGTTACATAGGCTTGTGACGACGAAGTCACTAC ATTGAAACGAGAACAGAGAGGACCATATGTAGATATCTTCAACATAATCC AGAAAGTACAAGACCCCGTTATTCACCTGGAAGTAGACGAAGAGCAGTGG GAGATCACACAAGGAAGGAAGAGGCAAGCGGAAAGAACTGGGTTCCTCGC TCAATACTTGTCAGGGCTACGACACACAGATGCTCCTCATACATAGACTG AGTACAGTATGTACACACATTGACACGTGTGTACAGTAGATACTATTCAT ATTAATACTGTATATCTGCTGAAGTGTGAACGCCCCCCCTCCCGCTCTGG ACGTTGCCGCGCCGGTTGGCGACTCGTTGGCGACTCCTCGTCATGGACGC AGTACGGCTGGGTGTTCTCCGAGGTGCTGGAGCCGCTGGCGATCATCCCG CAGCTGATGGTGCTGCAGAGGTATCGTGAAGTGGAGAACCTTACAGGTGG GGAGGGGTCCTTGGGCTTGAAATGGGGAATTTTCCCGCGCACCTAGTTTG TACCTATACTTTACTTTGTAGTGTATTTTGTACCTCTCTTAAAGCGGTTG TTGTGGGGGACATGTAAAGGCCAAGTGCCGTTCGGCACGCCGATGAGCAC TGTGTTGCGTCAGCGCCACTGCAGGTGCGCCCCCCGGCAGTGTCGTCGGG TCTTGCCCCCGTTCGGGCCACGACTCGAAAGCTCCGATTGGGTCGCCACG AAGAGTTGACCAATTTCGTGCACAGTGGAACGCATTACTAAAAATACGCC GTGTCCAAGTATTGAATAGAGCCCTCAGCCCTCGCGCTCCGGTTGCTCTC CGACGCCTGGGGATATATGTACATATTTTCGCCGATGATCCGCTCTCCTT TTTTCTTCCCCTTTCCGCGTCCTCCCCCAAGGACACTACGTGTTCTTGCT GGGGGCCTACCGAGTGCTGTACATCCTCAACTGGGTGTACCGCGCCTTCT ACGAGTTCGGCTACAAGCACCACCCTTTGCTCTACTTTGCGGGGATGGTG CAGACCCTTCTCTACGTGGACTTTTTCTACTACTACATCCTGAGGTGCGC GTCGGGAAGCGATGCCGCAAAAGATCTGCTCTGCCGATGCCCGCGCCTTT CCCTTTTGCCGCTACGCAGTCGACCCACCCGTCTTGCCCTTGGCTCCTTC GCGCCTCTACCCTGCGCTGTTCTGGGCCGGATGTTATTGGGAGAGTATTT CGATAAATGTAGGGGGGGGGGGGGGTATTGTTCTCATAGTTGTTTTTTAC ACGTCCCGTCGATCGGCAGAACCGTTGACCCCCCCCCGTTCAAACGGTTT TCTACCGCCGAAGAATGAATGTTTTTGCTGTTTTGTTTTGACCCGACTCA ATTCTCATGTATATATATATACATTTTTTGTGATGCTTCTCTGAGATGTC AATTCCCGCCCGTGTCCGGCACGGCTTCGGGCTTGATTTAGCTGGGATAG GTTTTGGCTTTCAAGGCAGATAGATGCGCAGATGCTGACGCGCTCGGAAG AACCTCCCACACAATCCAAGAAAATACTTTTTCTGTTAGTCCTAGGAAAG CCCCCCTTTTGCTGCTCGCCTCCCACACACCGTAGAAAAACCACAAACCT CTCAGGTTTTGATCGGTTTTGCTCCCCCTCTCCCCCGCCCGCTTCGTGCT TTTTTTTTATTCGTTCGCGTTTCCTGTCGCCGTGACTTGTCTCTCGACAC CTCAGCAAATATTATGGAGGTCGCTTGTCGCTTCCTTCCTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig972:117359..122350+

>mRNA_A-nodosum_M_contig972.15.1 ID=mRNA_A-nodosum_M_contig972.15.1|Name=mRNA_A-nodosum_M_contig972.15.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=681bp|location=Sequence derived from alignment at A-nodosum_M_contig972:117359..122350+ (Ascophyllum nodosum dioecious)
ATGAACATCTTCCGATTTTTGGGCGACATGTCCCACACGGCCAGCATCTT
GGTCCTGCTACTGAAGCTACGGGCATCGAAAAGTGCAGCAGGCGTATCGC
TCAAGACGCAGGAGTTATTCCTAGTGGTTTTTGCTACTCGATACCTCGAC
CTCGTGACCCACTTCTTCAGCTTGTACAACAGCATCATGAAGGTGCTGTA
CATCAGTCTTACCAGCTACATTGTGTACATGATCCGGGAACAGATGCCTA
TCAAGGCTACCTACGACAAGACGCAGGACTCTTTCCTGCACTGGAAATTT
GCCGTGGCGCCGTGCGCAGTGGTGGGGTTCATTGTTCACTGCTGGGACAC
AAGACATAGCTGGAAGTCTTTCCTCTCGATTACGAACTACGGCTGGGTGT
TCTCCGAGGTGCTGGAGCCGCTGGCGATCATCCCGCAGCTGATGGTGCTG
CAGAGGTATCGTGAAGTGGAGAACCTTACAGGACACTACGTGTTCTTGCT
GGGGGCCTACCGAGTGCTGTACATCCTCAACTGGGTGTACCGCGCCTTCT
ACGAGTTCGGCTACAAGCACCACCCTTTGCTCTACTTTGCGGGGATGGTG
CAGACCCTTCTCTACGTGGACTTTTTCTACTACTACATCCTGAGCAAATA
TTATGGAGGTCGCTTGTCGCTTCCTTCCTGA
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