mRNA_A-nodosum_M_contig971.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig971.2.1
Unique NamemRNA_A-nodosum_M_contig971.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig971.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig971contigA-nodosum_M_contig971:21501..22017 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size517
Hectar predicted targeting categorysignal peptide
Exons1
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870495.2248046-UTR-A-nodosum_M_contig971:21500..216471680870495.2248046-UTR-A-nodosum_M_contig971:21500..21647Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig971 21501..21647 -
1680870495.254066-UTR-A-nodosum_M_contig971:21974..220171680870495.254066-UTR-A-nodosum_M_contig971:21974..22017Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig971 21975..22017 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870495.2375937-CDS-A-nodosum_M_contig971:21647..219741680870495.2375937-CDS-A-nodosum_M_contig971:21647..21974Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig971 21648..21974 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig971.2.1prot_A-nodosum_M_contig971.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig971 21648..21974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig971.2.1

>prot_A-nodosum_M_contig971.2.1 ID=prot_A-nodosum_M_contig971.2.1|Name=mRNA_A-nodosum_M_contig971.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=109bp
MSVAKLAIETGLLLCPLPCFLLSSSLETIGVDRNRVTSCDKFNLRCPKIS
RGIPDSCRSYGLFQSLRQVPCQPHLKAKLANKCSDFVEKCQSRKIRRAMG
REPRKRRA*
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mRNA from alignment at A-nodosum_M_contig971:21501..22017-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig971.2.1 ID=mRNA_A-nodosum_M_contig971.2.1|Name=mRNA_A-nodosum_M_contig971.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=517bp|location=Sequence derived from alignment at A-nodosum_M_contig971:21501..22017- (Ascophyllum nodosum dioecious)
TTGCCAACCCGAGTTGAGGATAAGCCGGTCGGATCGATCGGAGATGTCTG
TAGCAAAGCTGGCGATTGAAACTGGCCTGCTGTTGTGTCCACTTCCATGT
TTCCTCTTATCTTCGAGTTTGGAGACGATTGGTGTTGATAGAAACCGCGT
GACATCGTGCGATAAATTCAACCTTCGGTGTCCAAAAATCTCTCGTGGCA
TTCCTGATTCCTGTCGGAGCTATGGCCTGTTCCAGAGTCTACGACAGGTG
CCGTGTCAGCCGCACCTTAAGGCAAAGCTTGCAAATAAATGTTCTGACTT
TGTCGAAAAGTGTCAAAGTCGTAAGATCAGGCGAGCGATGGGGCGGGAAC
CTCGCAAACGGCGCGCTTGATTTGCCCGTCGAAATCGCTCTAGTTTGGTT
GGATGTGAGATATACTCACTTGTGACAAGGCTTTGCACTAAACAAGCAAA
CTTACCGTCATCGCACTATTAAACGTGTGGTCGTCACTTTCTCTTGTTTT
CGATTTTACGCTGGCGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig971:21501..22017-

>mRNA_A-nodosum_M_contig971.2.1 ID=mRNA_A-nodosum_M_contig971.2.1|Name=mRNA_A-nodosum_M_contig971.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=327bp|location=Sequence derived from alignment at A-nodosum_M_contig971:21501..22017- (Ascophyllum nodosum dioecious)
ATGTCTGTAGCAAAGCTGGCGATTGAAACTGGCCTGCTGTTGTGTCCACT
TCCATGTTTCCTCTTATCTTCGAGTTTGGAGACGATTGGTGTTGATAGAA
ACCGCGTGACATCGTGCGATAAATTCAACCTTCGGTGTCCAAAAATCTCT
CGTGGCATTCCTGATTCCTGTCGGAGCTATGGCCTGTTCCAGAGTCTACG
ACAGGTGCCGTGTCAGCCGCACCTTAAGGCAAAGCTTGCAAATAAATGTT
CTGACTTTGTCGAAAAGTGTCAAAGTCGTAAGATCAGGCGAGCGATGGGG
CGGGAACCTCGCAAACGGCGCGCTTGA
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