mRNA_A-nodosum_M_contig97.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig97.7.1
Unique NamemRNA_A-nodosum_M_contig97.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig97.7.1 vs. uniprot
Match: A0A6H5JIS8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS8_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 9.350e-8
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 2 
Query:   92 ELELWGGLTEHSQEGPWYLAKHFSVVLTRAASDASALAWGGV 217
            E+  W  +T  + EGPW LA+HF+  LT+ ASDAS+LAWGGV
Sbjct:  369 EMRKWLDITATTHEGPWQLARHFTAALTKGASDASSLAWGGV 410
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig97.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIS8_9PHAE9.350e-857.14Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig97contigA-nodosum_M_contig97:92343..92559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size219
Hectar predicted targeting categoryother localisation
Exons1
Cds size216
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870489.6709356-UTR-A-nodosum_M_contig97:92342..923431680870489.6709356-UTR-A-nodosum_M_contig97:92342..92343Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig97 92343..92343 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870489.6844506-CDS-A-nodosum_M_contig97:92343..925591680870489.6844506-CDS-A-nodosum_M_contig97:92343..92559Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig97 92344..92559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig97.7.1prot_A-nodosum_M_contig97.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig97 92344..92559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig97.7.1

>prot_A-nodosum_M_contig97.7.1 ID=prot_A-nodosum_M_contig97.7.1|Name=mRNA_A-nodosum_M_contig97.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=72bp
MFEAIRKTQRPHHRVWQHRVRVPLRSGIREELELWGGLTEHSQEGPWYLA
KHFSVVLTRAASDASALAWGGV
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mRNA from alignment at A-nodosum_M_contig97:92343..92559+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig97.7.1 ID=mRNA_A-nodosum_M_contig97.7.1|Name=mRNA_A-nodosum_M_contig97.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=217bp|location=Sequence derived from alignment at A-nodosum_M_contig97:92343..92559+ (Ascophyllum nodosum dioecious)
CATGTTCGAGGCGATTCGAAAAACCCAACGCCCCCACCACCGCGTCTGGC
AGCATCGCGTGCGTGTCCCTCTGAGGAGTGGCATCCGTGAAGAGCTCGAG
CTGTGGGGCGGATTAACCGAACACTCCCAAGAAGGACCTTGGTACCTCGC
TAAGCATTTCTCTGTTGTACTCACGCGGGCTGCGTCGGACGCGTCCGCTC
TGGCATGGGGCGGGGTA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig97:92343..92559+

>mRNA_A-nodosum_M_contig97.7.1 ID=mRNA_A-nodosum_M_contig97.7.1|Name=mRNA_A-nodosum_M_contig97.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=216bp|location=Sequence derived from alignment at A-nodosum_M_contig97:92343..92559+ (Ascophyllum nodosum dioecious)
ATGTTCGAGGCGATTCGAAAAACCCAACGCCCCCACCACCGCGTCTGGCA
GCATCGCGTGCGTGTCCCTCTGAGGAGTGGCATCCGTGAAGAGCTCGAGC
TGTGGGGCGGATTAACCGAACACTCCCAAGAAGGACCTTGGTACCTCGCT
AAGCATTTCTCTGTTGTACTCACGCGGGCTGCGTCGGACGCGTCCGCTCT
GGCATGGGGCGGGGTA
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