mRNA_A-nodosum_M_contig97.61.2 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig97.61.2 vs. uniprot
Match: D7G5S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5S4_ECTSI) HSP 1 Score: 286 bits (732), Expect = 1.240e-87 Identity = 141/189 (74.60%), Postives = 166/189 (87.83%), Query Frame = 1
Query: 1210 MQSMINYLMVFPVVGTIVMGYVQSLHRPMLSVLGLVDLHYVVGALLFAVAWMGAFAGHLRHHILMQVYLAGLCVVLCLYMVLISLALVTWSRLAGGVDPEE---MTRIACEVGLYGCCCCTWSDGFDLTLYSVPSCPEWSDPQELAEVAIVFVKLGLLTTILSMVFVLCGLWASIVFHNNLKGYQVDYI 1767
MQSMINYL+VFPVVG IVMGYVQSLHRPML VLGLVDLHYVVGALL VA MG AGHLRHH+L+QVY+AGL VL LY+VLI+L LV+W+RLA G DP++ + RIACEVG++GCCCC ++ D +LY+VP CPEWSDP+ELA+VAIVFVKLGLLT+++S+VFVLCGLWAS++FHNNLKGYQVDYI
Sbjct: 1 MQSMINYLLVFPVVGAIVMGYVQSLHRPMLEVLGLVDLHYVVGALLLVVAVMGVLAGHLRHHLLLQVYMAGLGAVLMLYLVLITLGLVSWARLADGFDPDDPEGLVRIACEVGVHGCCCCRYTPELDFSLYTVPGCPEWSDPKELAQVAIVFVKLGLLTSVMSVVFVLCGLWASVMFHNNLKGYQVDYI 189
BLAST of mRNA_A-nodosum_M_contig97.61.2 vs. uniprot
Match: D7G5S3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5S3_ECTSI) HSP 1 Score: 162 bits (409), Expect = 5.010e-43 Identity = 78/113 (69.03%), Postives = 86/113 (76.11%), Query Frame = 1
Query: 733 MGCFQTLVAIVGIVAADKVSLHMMVGYFWLTSLVIGSMFMWSIAALDFHFNFRMWLDHHWDDAALISVRDRLCTNGTANNECAVPMAGFPLGSQEAWCEEKFDSDRCTDIKEE 1071
MGCFQ VSLHMMV YFWL SLVIGSMFMWSIAALDFHFNFR+WLD HWDD AL +VRDRLC NGTA+++CAVP AGFP GS + WC+ K+DSD CT IK E
Sbjct: 1 MGCFQ-------------VSLHMMVFYFWLVSLVIGSMFMWSIAALDFHFNFRVWLDKHWDDPALANVRDRLCLNGTASDQCAVPPAGFPHGSPDLWCQAKYDSDECTAIKAE 100
BLAST of mRNA_A-nodosum_M_contig97.61.2 vs. uniprot
Match: A0A7S2R9T0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9T0_9STRA) HSP 1 Score: 159 bits (402), Expect = 1.790e-38 Identity = 124/423 (29.31%), Postives = 202/423 (47.75%), Query Frame = 1
Query: 577 RNWLIALNSFIMLSGLVLTASAVSLLLFTRYKDDEPGGTDS--SVYNTSVALAIMGCFQTLVAIVGIVAADKVSLHMMVGYFWLTSLVIGSMFMWSIAALDFHFNFRMWLDHHWDDAALISVRDRLCT-NGTANNECAVPMAGFPLG------SQEAWCEEKFDSDRCTDIKEEAVDKAVQFLSFYMNVAGGLSLSSVVEMLVSLVLTVRVVTVPIIMRSMQSMINYLMVFPVVGTIVMGYVQSLHR---------------PMLSVLGLVDLHYVVGALLFAVAWMGAFAGHLRHHILMQVYLAGLCVVLCLYMVL-ISLALVTWSRLAGGVDPEEMTR-IACEVGLYGCCCCTWSDGFDLTLYSVPSCPEWSDPQELAEVAIVFVKLGLLTTILSMVFVLCGLWASIVFHNNLKGYQVDYI 1767
R WLI N I++ L + A + ++ YK+ TD ++ +A+A++GC L A+VGI A KVSL M+V YFWL L++ ++S+ +F FR W+ H WD + SVR C ++ +CAV P + + WCE+ +++ C I EA D+ F + S ++ + SL L R+VT+ II +SM +INY M+ P + +++G P + +G L G ++ +G FAG + + +YL G+ VV L + I ++++ D + T+ AC+ LY CCCC G D+ V CPEW+ +E+ +V V++KL L +S+VFV G+ ++ + NLK Y+ +YI
Sbjct: 13 RQWLILTNCLILICSLFI-AGVSAYVINEIYKETFERSTDQEDTMLYFWIAMAVLGCLHGLCAVVGITGALKVSLDMIVTYFWLAVLLLAPTLLFSVLMFEFQKLFRSWIKHRWDTPEMSSVRRSFCKPRSVSDTKCAVYPPSLPFKYNITDYTVDEWCEDFWNATDCRLIYIEATDQVTVFAEQALTATATASAVEILLLFFSLYLAYRIVTMSIITKSMNELINYFMILPAIAILLVGLDLKGDLSPTGDNDGSDFAEIDPAIDSIG--TLFVSAGVIILGFTLVGIFAGRAKRRRYLYLYLVGMTVVFALLLTCGIWAYQISFTLHLSFTDSQFKTQQFACDAHLYNCCCC----GEDV----VDVCPEWTK-EEVIDVVEVYLKLAGLCGFVSLVFVSGGVMSAYLLAKNLKEYKCEYI 423
BLAST of mRNA_A-nodosum_M_contig97.61.2 vs. uniprot
Match: A0A7S2R9V5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9V5_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 4.240e-16 Identity = 79/291 (27.15%), Postives = 134/291 (46.05%), Query Frame = 1
Query: 964 ANNECAVPMAGFPLG------SQEAWCEEKFDSDRCTDIKEEAVDKAVQFLSFYMNVAGGLSLSSVVEMLVSLVLTVRVVTVPIIMRSMQSMINYLMVFPVVGTIVMGYVQSLHR---------------PMLSVLGLVDLHYVVGALLFAVAWMGAFAGHLRHHILMQVYLAGLCVVLCLYMVL-ISLALVTWSRLAGGVDPEEMTR-IACEVGLYGCCCCTWSDGFDLTLYSVPSCPEWSDPQELAEVAIVFVKLGLLTTILSMVFVLCGLWASIVFHNNLKGYQVDYI 1767
++ +CAV P + + WCE+ +++ C I EA D+ F + S ++ + SL L R+VT+ II +SM +INY M+ P + +++G P + +G L G ++ +G FAG + + +YL G+ VV L + I ++++ D + T+ AC+ LY CCCC G D+ V CPEW+ +E+ +V V++KL L +S+VFV G+ ++ + NLK Y+ +YI
Sbjct: 15 SDTKCAVYPPSLPFKYNITDYTVDEWCEDFWNATDCRLIYIEATDQVTVFAEQALTATATASAVEILLLFFSLYLAYRIVTMSIITKSMNELINYFMILPAIAILLVGLDLKGDLSPTGDNDGSDFAEIDPAIDSIG--TLFVSAGVIILGFTLVGIFAGRAKRRRYLYLYLVGMTVVFALLLTCGIWAYQISFTLHLSFTDSQFKTQQFACDAHLYNCCCC----GEDV----VDVCPEWTK-EEVIDVVEVYLKLAGLCGFVSLVFVSGGVMSAYLLAKNLKEYKCEYI 294
BLAST of mRNA_A-nodosum_M_contig97.61.2 vs. uniprot
Match: A0A8K1C801_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C801_PYTOL) HSP 1 Score: 87.8 bits (216), Expect = 1.240e-14 Identity = 96/397 (24.18%), Postives = 164/397 (41.31%), Query Frame = 1
Query: 712 TSVALAIMGCFQTLVAIVGIVAADKVSLHMMVGYFWLTSLVIGSMFMWSIAALDFHFNFRMWLDHHWDDAALISVRDRLCTNGTANNECAVPMAGFPLGSQEAWCEEKFDSDRCTDIKEEAVDKAVQFLSFYMNVAGGLSLSSVVEMLVSLVLTVRVVTVPIIMRSMQSMINYLMVFPVVGTIVMGY---VQSLHRPMLSVLGLVDLHYVVGALLFAVAWMGAFAGHLRHHILMQVYLAGLCVVLCLYMVLISLALVTWSRLAGGVDPEEMTRI-ACEVGLYGCCCCTW--------------SDGF-------------DLTLYSVPS--------------CPEWSDPQELAEVAIVFVKLGLLTTILSMVFVLCGLWASIVFHNNLKGYQVDYI 1767
++ ALA +G F L +++G V A + M++ YF+L +I +F+ S +A+ F + WL HW L +R + C CE D+AV +L + G L ++ +L ++ +R+VTVPI+M+++ ++IN+ +F V+GT + GY V+S + + VVG L+FA++ +G A + ++ +Y+ G+ +V A +LA + + + AC++GL GC CT +DG TL + P CPEWS A + LGL ++ F++ G A+ + +L GYQ D I
Sbjct: 38 SAAALASIGAFVVLFSVLGFVGAGREKSAMLMLYFFLNFFLITCLFISSYSAIAFQDSLESWLKIHWKHPVLDYLRTKPC------------------------CEN--------------YDEAVSYLESKFLILGALGFVCLLLVLAAMYCVIRIVTVPIVMKNLLTVINF--IFIVLGTGIFGYGCAVKSKDELTSGQEWIAIMFIVVGTLIFALSVIGIIASRSKSRTMLLIYIVGIGACFVALLVCAGAAFSFSDKLADNYNASQHRDVMACDIGLSGCTNCTDVPSEMVPCLGVTMDNDGIVHSCNATTAKCQQGWTLLNSPEDQGKTTNDIAECGKCPEWSQEDVHAYLKSGLQLLGLSAAVVCF-FIIVGCAAAFILRKSLAGYQTDSI 393
BLAST of mRNA_A-nodosum_M_contig97.61.2 vs. uniprot
Match: H3GVR1_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GVR1_PHYRM) HSP 1 Score: 84.7 bits (208), Expect = 1.350e-13 Identity = 100/434 (23.04%), Postives = 172/434 (39.63%), Query Frame = 1
Query: 619 GLVLTASAVSLLLFTRYKDDEPGGTDSSVYNTSVALAIMGCFQTLVAIVGIVAADKVSLHMMVGYFWLTSLVIGSMFMWSIAALDFHFNFRMWLDHHWDDAALISVRDRLCTNGTANNECAVPMAGFPLGSQEAWCEEKFDSDRCTDIKEEAVDKAVQFLSFYMNVAGGLSLSSVVEMLVSLVLTVRVVTVPIIMRSMQSMINYLMVFPVVGTIVMGYVQSLHRPMLSVLGLVDLHY-VVGALLFAVAWMGAFAGHLRHHILMQVYLAGLCVVLCLYMVLISLALVTWSRLAGGVDPEEMTRIACEVGLYGCCCCT-------------------W--------SDGF---------DLTLYSVPS--------------CPEWSDPQELAEVAIVFVKLGLLTTILSMVFVLCGLWASIVFHNNLKGYQVDYI 1767
G+ L A+ L+L T + ++ ALA +G L++ +G V A + +++ +F++ +++ +F+ AA F W+ HHW L ++RD C CA AVQ+L + V G + ++ ++ +L S+ VR+VTVPI+MRSM S++N + G + G +H M S + + + VVG L+ A++ +G + L+ +Y+ GL L +V A LA + + +AC++ L GC CT W S G D+T+ + + CPEWS A + LGL ++ + F++ G +++V +L GYQ D I
Sbjct: 19 GVSLLGLALHLVLSTNFSA------------SAAALAALGGCVVLLSALGFVGAGRDKSRLLLLFFFVNFVLVTGLFVACYAAFFFQDALESWVKHHWTAHVLAALRDTSC--------CAT------------------------------YSDAVQYLEHRVAVVGAVGVACMLLVLASMYCVVRIVTVPIVMRSMLSVMNAIFTLLGTGLFIFGLSVKVHDEMTSGQRWIAIIFIVVGTLMVALSVLGIIGSRSKSRSLLLIYIVGLGGCLVALLVCSVSAFSFSDNLASTYNAHTSSTLACDIDLSGCTNCTDVASEMVPCEGVMHTNDDHWVSCNTTSSSGGSTSTDSGCLEDMTILNAEADQSYEQNDIAKCGKCPEWSASDVQAYLRSTLHLLGLFAVVVCL-FMIVGFASALVLRRSLAGYQTDSI 401
BLAST of mRNA_A-nodosum_M_contig97.61.2 vs. uniprot
Match: W2RHX0_PHYPN (Uncharacterized protein n=22 Tax=Phytophthora TaxID=4783 RepID=W2RHX0_PHYPN) HSP 1 Score: 84.3 bits (207), Expect = 1.760e-13 Identity = 90/400 (22.50%), Postives = 161/400 (40.25%), Query Frame = 1
Query: 712 TSVALAIMGCFQTLVAIVGIVAADKVSLHMMVGYFWLTSLVIGSMFMWSIAALDFHFNFRMWLDHHWDDAALISVRDRLCTNGTANNECAVPMAGFPLGSQEAWCEEKFDSDRCTDIKEEAVDKAVQFLSFYMNVAGGLSLSSVVEMLVSLVLTVRVVTVPIIMRSMQSMINYLMVFPVVGTIVMGYVQSLHRPMLSVLGLVDLHY-VVGALLFAVAWMGAFAGHLRHHILMQVYLAGLCVVLCLYMVLISLALVTWSRLAGGVDPEEMTRIACEVGLYGCCCCT--------------WSDGF----------------------DLTLYSVPS-----------CPEWSDPQELAEVAIVFVKLGLLTTILSMVFVLCGLWASIVFHNNLKGYQVDYI 1767
++ AL+ +G L++++G + A + +++ +F++ L++ +F+ A F W+ HHW L ++RD C C E AV +L + + G + ++ ++ ++ S+ VR+VTVPIIMRSM S++N + G + G +H M S + + + VVG L+ A++ +G + L+ +Y+ GL L +V A LA + + +AC++ L GC CT SDGF +T+ + + CPEWS A + LGL ++ + F++ G +++V +L GYQ D I
Sbjct: 38 SAAALSALGMGVVLLSLLGFIGAGRDKSRLLLIFFFVNFLLVTGLFVACYTAFFFQDALESWVKHHWTANVLAALRDSSC---------------------------------CATYSE-----AVDYLEYRVVAIGAIGVACMLLVIASMYCVVRIVTVPIIMRSMLSVMNAIFTLLGTGLFIFGLSVKVHDEMTSGQRWIAIIFIVVGTLMVALSVLGFIGSKSKSRSLLLIYIIGLGSCLIALLVCSVSAFSFSDHLASTYNAHTSSTLACDINLSGCTNCTDMATEIIPCNGVLKTSDGFWVPCNSTSFNDGSMSSGSDCIEGMTVLNTKADQGYEQNDCGKCPEWSASDVQAYLRSTLHLLGLFAVVVCL-FMVVGFGSALVLRRSLAGYQTDSI 398
BLAST of mRNA_A-nodosum_M_contig97.61.2 vs. uniprot
Match: A0A2D4BE20_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BE20_PYTIN) HSP 1 Score: 82.4 bits (202), Expect = 7.130e-13 Identity = 91/395 (23.04%), Postives = 156/395 (39.49%), Query Frame = 1
Query: 712 TSVALAIMGCFQTLVAIVGIVAADKVSLHMMVGYFWLTSLVIGSMFMWSIAALDFHFNFRMWLDHHWDDAALISVRDRLCTNGTANNECAVPMAGFPLGSQEAWCEEKFDSDRCTDIKEEAVDKAVQFLSFYMNVAGGLSLSSVVEMLVSLVLTVRVVTVPIIMRSMQSMINYLMVFPVVGTIVMGYVQSLHRPMLSVLGLVD-LHYVVGALLFAVAWMGAFAGHLRHHILMQVYLAGLCVVLCLYMVLISLALVTWSRLAGGVDPEEMT-RIACEVGLYGCCCCT-------------------WS----------DGFDLT------------LYSVPSCPEWSDPQELAEVAIVFVKLGLLTTILSMVFVLCGLWASIVFHNNLKGYQVDYI 1767
++ ALA +G F L +++G V A + +++ YF+L + +F+ S AAL F + WL HW L +R + C + + V +L + G + + + +L ++ VR+VTVPI+M+++ +++N + + G G V + S + L V+G +FA++ +G + ++ +Y+ G+ L +V A RLA D T RIAC++ L GC CT W+ DG+ L + CPEW+ A + LGLL I+S F++ G A+++ +L GYQ D I
Sbjct: 38 SAAALASIGAFVVLFSLLGFVGAGRDKSQLLMLYFFLNFFLATCLFLSSYAALSFQHSLESWLKRHWGHPVLDYLRAQPCCH--------------------------------------TYETTVAYLENQFVLLGAVGFACLALVLAAMYCVVRIVTVPIVMKNLLTVLNVIFIVLGAGLFTYGGVVKSKDELTSGQDWIAVLFIVIGTFIFALSVIGIIGSRSKSRTMLLIYIVGIGGCLVALIVCAGAAFSFSDRLAAQYDANLHTSRIACDIELPGCTNCTDIAANVVPCTGVTKLANGTWAACDAETAKCRDGWTLLNPVEDQGYTPIDIAECGKCPEWTKEDVHAYLKFGLHLLGLLAAIVSF-FIIVGFGAALILRKSLAGYQTDSI 393
BLAST of mRNA_A-nodosum_M_contig97.61.2 vs. uniprot
Match: A0A3F2RM06_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RM06_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 7.220e-13 Identity = 75/296 (25.34%), Postives = 130/296 (43.92%), Query Frame = 1
Query: 697 SSVYNTSVALAIMGCFQTLVAIVGIVAADKVSLHMMVGYFWLTSLVIGSMFMWSIAALDFHFNFRMWLDHHWDDAALISVRDRLCTNGTANNECAVPMAGFPLGSQEAWCEEKFDSDRCTDIKEEAVDKAVQFLSFYMNVAGGLSLSSVVEMLVSLVLTVRVVTVPIIMRSMQSMINYLMVFPVVGTIVMGYVQSLHRPMLSVLGLVDLHY-VVGALLFAVAWMGAFAGHLRHHILMQVYLAGLCVVLCLYMVLISLALVTWSRLAGGVDPEEMTRIACEVGLYGCCCCTWSDGFD 1581
S V ++ AL+ +G L+A++G V A + +++ +F+L L++ +F+ AA F W+ HHW L ++R++ C CA DK V +L + V G + + ++ ++ ++ VR+VTVPI+MRSM S+ N + V G + G +H M S + + + VVG L+ A++ +G + L+ +Y+ GL L +V A LA + + +AC++ L GC CT S D
Sbjct: 33 SHVGASAAALSGLGGCVVLLALLGFVGAGRDKSRLLLLFFFLNFLLLTGLFVACYAAFFFRDALESWVKHHWSSDVLAALREKEC--------CAT------------------------------YDKTVDYLEHQLVVVGAVGVVCMLLVVAAMYCVVRIVTVPIVMRSMLSVTNAVFVLLGTGLFIFGLSVKVHDEMTSGQRWIAIIFIVVGTLMVALSVLGIVGSRAKSRSLLLIYVIGLGSCLIALLVCSVSAFSFSDNLASTYNAHTSSTLACDINLSGCTNCTDSVACD 290
BLAST of mRNA_A-nodosum_M_contig97.61.2 vs. uniprot
Match: A0A7S4HX69_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HX69_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 4.370e-12 Identity = 73/267 (27.34%), Postives = 128/267 (47.94%), Query Frame = 1
Query: 811 YFWLTSLVIGSMFMWSIAALDFHFNFRMWLDHHWDDAALISVRDRLCTNGTANNECAVPM-AGFPLGSQEAWCEEKFDSDRCTDIKEEAVD--KAVQFLSFYMNVAGGLSLSSVVEMLVSLVLTVRVVTVPIIMRSMQSMINYLMVFPVVGTIVMGYVQSLHRPMLSVLGLVDL---HYVVGALLFAVAWMGAFAGHL---------RHHILMQVYLAGLCVVLCLYMVLISLALVTWSRLAG-GVDPEEMTRIACE-VGLYGCCCC 1560
Y W+ ++ + IA +D H + + HHW AAL R RLC+ GTA+ +C VP+ G ++EAWC+ +++ C IK +A + KA + N L L +++ + +L L V +++ PI+ S QS I + ++ P+VG++ G + S+ +V + + GA F A +G F L R +++ +++A L + + + + S +L S + +D E +IACE C CC
Sbjct: 571 YMWVLYWILPIEILMMIALIDIHDATDVLVKHHWATAALRWFRLRLCSPGTADTKCIVPIDGGEGYENEEAWCKANYNATDCEVIKNDAQEIMKAFSYAFTVTNWVWALLLVALLAL--ALTLLVGIISSPIVRSSKQSNIPFWLILPIVGSVFGGAILPTATGNESIEDIVWIGFAFFACGATFFTAALLGWFISVLSVLNNKDKKRKQVVIHLFIAVLLLTVLALVAIFSASLFFSSTVVKIDIDEEMRGKIACENEPANSCTCC 835 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig97.61.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig97.61.2 >prot_A-nodosum_M_contig97.61.2 ID=prot_A-nodosum_M_contig97.61.2|Name=mRNA_A-nodosum_M_contig97.61.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=418bp MALFPRTFNSARWRYWCSNERNWLIALNSFIMLSGLVLTASAVSLLLFTRback to top mRNA from alignment at A-nodosum_M_contig97:811800..823921- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig97.61.2 ID=mRNA_A-nodosum_M_contig97.61.2|Name=mRNA_A-nodosum_M_contig97.61.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=12122bp|location=Sequence derived from alignment at A-nodosum_M_contig97:811800..823921- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig97:811800..823921- >mRNA_A-nodosum_M_contig97.61.2 ID=mRNA_A-nodosum_M_contig97.61.2|Name=mRNA_A-nodosum_M_contig97.61.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=1254bp|location=Sequence derived from alignment at A-nodosum_M_contig97:811800..823921- (Ascophyllum nodosum dioecious)back to top |