mRNA_A-nodosum_M_contig97.54.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig97.54.1
Unique NamemRNA_A-nodosum_M_contig97.54.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig97.54.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig97contigA-nodosum_M_contig97:779896..782046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size560
Hectar predicted targeting categoryother localisation
Exons4
Cds size381
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870489.472655-CDS-A-nodosum_M_contig97:779895..7800701680870489.472655-CDS-A-nodosum_M_contig97:779895..780070Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig97 779896..780070 -
1680870489.4849172-CDS-A-nodosum_M_contig97:780357..7804801680870489.4849172-CDS-A-nodosum_M_contig97:780357..780480Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig97 780358..780480 -
1680870489.4951816-CDS-A-nodosum_M_contig97:781065..7811481680870489.4951816-CDS-A-nodosum_M_contig97:781065..781148Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig97 781066..781148 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870489.5093892-UTR-A-nodosum_M_contig97:781148..7812321680870489.5093892-UTR-A-nodosum_M_contig97:781148..781232Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig97 781149..781232 -
1680870489.5215294-UTR-A-nodosum_M_contig97:781953..7820461680870489.5215294-UTR-A-nodosum_M_contig97:781953..782046Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig97 781954..782046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig97.54.1prot_A-nodosum_M_contig97.54.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig97 779896..781148 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig97.54.1

>prot_A-nodosum_M_contig97.54.1 ID=prot_A-nodosum_M_contig97.54.1|Name=mRNA_A-nodosum_M_contig97.54.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=127bp
MGASRQLRPEDLPGLAGRDRTKLLADDRKCVADKDLRTFFLDTATNQKQK
EHDVNDLQVRVYWRGVISRGRELGWSGPTNSTRSVEANKWRSFFRGGREL
GWSGPTSSTPPTRASDSEAGLSQRTGS
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mRNA from alignment at A-nodosum_M_contig97:779896..782046-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig97.54.1 ID=mRNA_A-nodosum_M_contig97.54.1|Name=mRNA_A-nodosum_M_contig97.54.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2151bp|location=Sequence derived from alignment at A-nodosum_M_contig97:779896..782046- (Ascophyllum nodosum dioecious)
CATCGCCACAGTGGATGCCTTGAGGGCACAGCAGCTACCGGGTATTGGCA
TTCCGTTCGAGGAGAGAGCGAGGAGGGCGGTTGACCGTGCCAGGTGAGCT
CAAAATAGAAAACGACCACCGAACGACCGCATATTATTGCTGGAAATGAC
TTGGTCGGTCTAATGCGAGCTGTAGTCAGTGCAGAAGTTACTATACTGTA
GTTTCGAGACCCAGCAGTAGTAATTTGTTTTCCTTATTTTCTTTCGTGTT
TTCGAATCGGAAATACAATATGGTGAGAGTGGGAAAGAGTAGAACAGTTG
AACCAATGGTAGACGAAGTAGATGAGTGCTAAATCTGAATCGCGCAATGG
GATTAAAAAACATAATCGGATAGTTACGGTAAAGACTTCTAGAACTTCCA
CGATTTTTTGTAGTTAAAAAATAATTTATCACGTTGATCGGCCCTGTTAG
GAAAACGTACTATTTGACAAACAGCCTACAGCAGTTATACGTCATGAACC
TATGAGCCTTGCTGTTTGGGAGCATGTTGTTTTTTCGTGAGAAGTTTCAG
CTGCGATTGATAATTTTGTACACTACGTGCGTGTACGGTCGACACACCAC
CCGGTGGTGTACGTACGTAAACGAGTCTTTGGCGCGCCTCGATCCCGATA
GAAAGAAAAAAGGGGTGTCTTAACTGTCCTGCTACACACTTATTAATAGT
ATTAATAGTATTATTAGTATTGATTACTAAGCTTACTGGCACCTTGGCAC
ATCTGTATCTGCTGTTAATGCTACGTTGGCATATGACTCGATGCTATTGT
ACATACATCGTTAGCTGTCGAGGCGAGGGGATGCTGATACAGACGCTCTC
GGATGGGTATCGTTGATCTCGTTCTCGCGGCTGAACCCTCACTTGGAGAT
GGGAGCCTCGAGGCAGCTTCGACCGGAGGATTTGCCGGGACTCGCGGGGA
GAGACCGCACAAAACTCTTGGCGGACGATAGGTCAGTCATCAGAACATTA
CAGCGTCCCCACCAATCTCCTCCCTAGAACCAGGGCCTTTCCCATGATCC
CCTTTCTTGAGCTCTCAAGGACGACTCCACGACAATACCATGAATGGACC
GTATTCTGCCTTGTTGGGCTGAGCCTTAAAGCGTTCTTTTGGGTGTCGGG
GGAAGGGATTCGGCGGTTTCTTGCCCCCCAGGCGATTCCCATGACTCTCA
CAAATATCTACTGGTAGATATACTCCTTCGACGTTTTCTTTGTTAGGGTT
TAGAATAGCGCCCCCCCCCCTCTCCCCCGGCGGTGACCTCCGATACCGGT
ACCGGTTTTTCTCAAGAGCGCTTCATATGGCATGCGGCGGCATATGCTGG
TTCCAACCCCTGACCGCCTCAACGATACTGCAGCGGTACTTTGACGCTTG
GTGACACCGTTTATACTTGTACACCTGGTAATGGGAAGTGTCACGATACC
CTTGGTAAGACAGTTAACACTGGTTAGTACTGTAGCGATGGCAATAAGGT
ACTATAAGAGGTAATTCGTGCTTTACATGGTACGGTACGGTACGATTTCG
TTACGTGTCAATAAAGGAAGTGCGTGGCCGACAAGGATCTCAGAACTTTC
TTCTTGGACACAGCAACAAACCAAAAACAGAAGGAACACGACGTGAATGA
CCTTCAAGTGCGCGTGTACTGGAGGGGTGTAATAAGCAGGTTTGTTTAGA
CGTAGAAGGTACAAACCGTTGTTTATTGAAACCCATCGAACTGCCAGAGG
CGTTTTGGTTTTGAACCTGTATTTCAGGGTCTCGGGGACAATAGGGCCTG
GGCCCTCAGGAGGTCAGCCGTTCTTCACTTTCTCGGAGAGCTCACGTAAG
GGCTAAAGGCACGCTAGACAGCGTAGAACAGAAGAACTACGCAGTAGATG
ATCAGAGAGAGAGCGATACGAAAGGTTAGTCAGCGTCGGAGGCCAACAAG
TTGCGTTCTTTCTCTTTCTTTCGCAGAGGCCGAGAGCTGGGCTGGAGTGG
TCCAACGAACTCGACTCGTTCTGTGGAGGCTAACAAGTGGCGTTCGTTCT
TTCGTGGAGGCCGAGAGCTGGGCTGGAGTGGTCCAACGAGCTCAACTCCA
CCAACGCGCGCATCGGATAGCGAGGCGGGGCTGAGTCAACGAACTGGAAG
C
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Coding sequence (CDS) from alignment at A-nodosum_M_contig97:779896..782046-

>mRNA_A-nodosum_M_contig97.54.1 ID=mRNA_A-nodosum_M_contig97.54.1|Name=mRNA_A-nodosum_M_contig97.54.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=381bp|location=Sequence derived from alignment at A-nodosum_M_contig97:779896..782046- (Ascophyllum nodosum dioecious)
ATGGGAGCCTCGAGGCAGCTTCGACCGGAGGATTTGCCGGGACTCGCGGG
GAGAGACCGCACAAAACTCTTGGCGGACGATAGGAAGTGCGTGGCCGACA
AGGATCTCAGAACTTTCTTCTTGGACACAGCAACAAACCAAAAACAGAAG
GAACACGACGTGAATGACCTTCAAGTGCGCGTGTACTGGAGGGGTGTAAT
AAGCAGAGGCCGAGAGCTGGGCTGGAGTGGTCCAACGAACTCGACTCGTT
CTGTGGAGGCTAACAAGTGGCGTTCGTTCTTTCGTGGAGGCCGAGAGCTG
GGCTGGAGTGGTCCAACGAGCTCAACTCCACCAACGCGCGCATCGGATAG
CGAGGCGGGGCTGAGTCAACGAACTGGAAGC
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