mRNA_A-nodosum_M_contig97.29.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig97.29.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 411 bits (1057), Expect = 1.040e-120 Identity = 315/1036 (30.41%), Postives = 491/1036 (47.39%), Query Frame = 1
Query: 415 DVMEVHRMLTHPSEDITRKTAEMMGIETTGQWGACETCFQVKAKRHAVPKKTDERASVRGQRFFVDH------SSLGGNSYVVIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLS-IKCIRTDNGGEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLSREKAI---ILMEELDDVINVPR-EKLWAQAMLFACDVTNKSVTTSTDGDKSPYELWFVKFSTADHLRRFGAVGYARQSVREHKMAPKGEKCVFMGIPRNFPTGTVSVLLVRSRNIVERQAVQW----IDGPKKTGGDAIGSDNRGMKSAGDEI------IVERGTPQLNVQELGQEQQLTLHEHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQHE------EGGAEPALGSANLEGPALXXXRK----------------LTIDGNIPPILSSRTR----------SRRPHTGVEGEALHCFLPAIEAEEENGVEDALA----------------CDDGGQMAMQATLDTPE-PRNRRQAKESQEWDEWRKAEETEMLGMVENCVYKQVAR-PKDKLVVGTKMLYKRKIGQDGEVEKYKCRLVAQGFWQVEGVHYTVKYSLTPATALIRMLLAMAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRC*NNKFCDDMTAIGFEQAKANPCVFRKVVDGEAEMVVIVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAGYNMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKTTKIPTASGVPTLSEADEPRNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKILQYLLHTKEWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSISGAVLMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVKEVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKDINVKHHLVRDASDARKVRVVYVRSEDQHADLLTKPL 3303
D+ E H + H E + R TA+ +G + G AC C KA R + +T R+ + R FVD +S+GG Y +I DD TR + F++ KSD +A + +A S ++ +R+DNGGEF GEF + I E TP +PQYNGVAER LGL E A+ I + L + +P+ +KLWA+AM +AC+ N + ++ SPYE+W+ + A F Y R R K+ PKGE C ++G R+ P VL R+ I E + V W P I G + + D + +V RG ++ + E E EG G + P + ++ PP + R R + R + V A+ + G+ +L D ++ + D P + ++A+ S+ W A E+ G++ + A+ P V+ + ++K K + G++ K K RLVA+GF Q GV Y +S T A R+++A+A + EL H+D EQAF+++++D E+++++P G V RLNK++YGL QA R + ++ IGFEQ+ ++PCV R ++ E +V +HVDDIL +A K+ + A LG K++G+ + +GC R+R+ ++ Q Y+ S+++RF+V +T+ IP S ++ R+ E E P+RE VG+LMW A TRPDI+ AVRAVAR P +H KA KIL YLL T + + Y D+DF + + RRS+SGA++++A + W S+ Q+ + TSEAEY+A+ + VKE LF+ + +F+ PS + ++V EDNEGAI LA N +S R+K I+V+HH +R+ ++ + V +V SE+QHAD+LTK L
Sbjct: 186 DINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPYP-FLKPAYCRWQ-RPTKLLPKGESCFYVGPSRDHPRDCHRVL-TRAGTIQETRDVTWEVLQSQLPPLQPSLPIEVAEEGGEDSDDNVETEVWPLVGRGVAHTLLKRDAVPSGARVEEVESVGAGSVGPSFSVPSSPAEPSSLANNSFDSVASVSSPMPVNDGEGQGGQESGELEMGDPGGDDEEESMEQXXXXXXXXXXXXXPVEAEAPPPAARRPRHVAELADFNTASRENDEVREGRTRAQTRAVNQQSVPGLVASLGPISATELVYTLMSEQRAGDETELPKELVQDVESVPDSYQEAQRSKYAKIWEGAMSAEVEGLIRAGTFTLAAKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDIL-YAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPA-------SPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKAL 1210
BLAST of mRNA_A-nodosum_M_contig97.29.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 409 bits (1052), Expect = 3.830e-119 Identity = 363/1191 (30.48%), Postives = 555/1191 (46.60%), Query Frame = 1
Query: 1 DSGTTFHMSHTRAGMSAYKKASPGTNVEIADGNILPVDGFGRIEVDLDQPGRTTKM---------VKMDDVAYVPGLSRNLLSTVKAV--EQWG------------KPLIYYRNKAVLGGLFSATGVRRIPRQEAALEVNLTENGLVKIASGAALRASASRDVMEVHRMLTHPSEDITRKTAEMMGIETTGQWGACETCFQVKAKRHAVPKKTDERASVRGQRFFVDH------SSLGGNSYVVIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLS-IKCIRTDNGGEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLSREKAI---ILMEELDDVINVPR-EKLWAQAMLFACDVTNKSVTTSTDGDKSPYELWFVKFSTADHLRRFGAVGYARQSVREHKMAPKGEKCVFMGIPRNFPTGTVSVLLVRSRNIVERQAVQWIDGPKKTGGDAIGSDNRGMKSAGDEI----------IVERGT-----------PQLNVQELGQEQQLTLHEHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQHEEGG---------------------------AEPALGSANLEGPALXXXRKLTIDGNIPPILSSRTRSRRPHTGVEGEALHCFLPAIEAEEENGVEDALACD----DGGQMAMQATLDTP-EPRNRRQAKESQEWDEWRKAEETEMLGMVENCVYKQVAR-PKDKLVVGTKMLYKRKIGQDGEVEKYKCRLVAQGFWQVEGVHYTVKYSLTPATALIRMLLAMAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRC*NNKFCDDMTAIGFEQAKANPCVFRKVVDGEAEMVVIVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAGYNMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKTTKIPTASGVPTLSEADEPRNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKILQYLLHTKEWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSISGAVLMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVKEVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKDINVKHHLVRDASDARKVRVVYVRSEDQHADLLTKPL 3303
D+GT FHM+ + A M K N G G + ++ G + V++ +V Y P L NL S E W K + ++N G+ A+ R + LT + + + DV E H + H + + R TA+ +G E G+ C C KA + + ++T R+ + R FVD +S+GG Y +I DD TR + F+K KSD A S +A S ++ +R+DNGGEF GEF + I E TP +PQYNGVAER LGL E A+ I + L + +P+ +KLWA+AM +AC+ N + ++ KSPYE+W+ + A F Y R R K+ PKGE C ++G R+ P VL R+ I E + V W P + +V RG P V E+ E XXXXXXXXXXXXXXXXX + + GG A P G L + + + RTR++ V +++ + I V AL + D ++ + D EP + +A+ S+ W A E+ G++ + + P V+ + ++K K + G++ K K RLVA+GF Q GV Y +S T A R+++A+A + EL H+D EQAF+++++D E+++++P V RLNK++YGL QA R + ++ IGFEQ+ ++PCV R ++ E +V +HVDDIL +A K+ + A LG K++G+ + +GC R+RK ++ Q Y+ S+++RF++ +T+ IP + L+ D R+ E+E P+RE VG+LMW A+ TR DI+ AVRAVAR P +H KA KIL YLL T + + + Y D+DF + RRS+SGA++ +A + W SR Q+ + TSEAEY+A+ + VKE LF+ + +F+ PS++ ++V EDNEGAI LA N +S R+K I+V+HH +R+ ++ + V +V S++QHAD+LTK L
Sbjct: 235 DTGTAFHMTDSLACMKDLKPCHKSVN------------GIGGVSCEISFSGTLELVFVTADSEFSVELKNVLYSPNLGYNLFSPSAEFDGESWNGLGGPDGVMTAFKGQVTFQN---FDGMLIASAYRLGEASVGTVLAALTPSNP---------KHKTTMDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPYP-FLKPAYCRWQ-RPSKLLPKGESCFYVGPSRDHPRDCHRVL-TRAGTIQETRDVTWEVLPSQLXXXXXXXXXXXXXXXXXXXXXXXXXEVWPLVGRGVAHTLLKREAVPPGTEVVEV--ESXXXXXXXXXXXXXXXXXXXXXXXXXSVSSPVPEIDVNSGEIETGDPGGDDEXXXXXXXXXXXXXXXXXXRPVETEASPPTGRRPRHVAELADFNTAAREND--EVREGRTRAQT--RAVNQQSVPGLMATIGPISGTEVLYALLSEQRAGDETELPKELVQDVESEPGSYEEAQRSKYAKIWEGARSAEVEGLMRAGTFTLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDIL-YAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIPAS-----LNNDD--RSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKAL 1384
BLAST of mRNA_A-nodosum_M_contig97.29.1 vs. uniprot
Match: H3H572_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H572_PHYRM) HSP 1 Score: 399 bits (1026), Expect = 8.740e-116 Identity = 340/1140 (29.82%), Postives = 524/1140 (45.96%), Query Frame = 1
Query: 1 DSGTTFHMSHTRAGMSAYKKASPGTNVEIADGNILPVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLSTVKAVEQWGKPLIYYRNKAVLGGLFSATGVRRIPRQEAALEVNLTENGLVKIASGAALRASASRDVMEVHRMLTHPSEDITRKTAEMM-GIETTGQWGA--CETCFQVKAKRHAVPKKTDERASVRGQRFFVD------HSSLGGNSYVVIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLSIKCIRTDNGGEFEGEFQRELDR----RSITHEHTPPDTPQYNGVAERALGLSREKAIILMEELDDVINVPREKLWAQAMLFACDVTNKSVTTSTDGDKSPYELWFVKFSTADHLRRFGAVGYAR-QSVREHKMAPKGEKCVFMGIPRN------FPTGTVSVLLVRSRNIVERQAVQWIDGPKKTGGDAIGSDNRGMKSAGDEIIVERGTPQLNVQELGQEQQLTLHEHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQHEEGGAEPALGSANLEGPALXXXRKLTIDGNIPPIL---SSRTRSRRPHTGVEGEALHCFLPAIEAEEENGVED--------ALACDDG----GQMAMQATLDTPE--PRNRRQAKESQEWDEWRKAEETEMLGMVENCVYKQVARPKDKLVVGTKMLYKRKIGQDGEVEKYKCRLVAQGFWQVEGVHYTVKYSLTPATALIRMLLAMAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRC*NNKFCDDMTAIGFEQAKANPCVFRKVVDGEAEMVVIVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAGYNMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKTTKI--PTASGVPTLSEADEPRNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKILQYLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSISGAVLMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVKEVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKDINVKHHLVRDASDARKVRVVYVRSEDQHADLLTKPL 3303
DSG T HM+ R + YK V IADG + V G G + + G +KM DV ++PGL R LLS + E+ G + + + + A + + + L+ V+ A + H + H ++D KT G+ T C C + K P ++ + + Q D S GG YV+ FVDD +++ V F+ KKS+ + + Y IKC+R+DNG EF +E+DR I H+ T P +PQ NGVAER EKA ++ WA+A+ + + N+S TTST +P+EL F DHLR FG+VGYA + K+ PK KC+F+G N + + V + RS + ER+ +DG ++ +D + DE++ +L QEQQ HEE A P S + L R T + L R R RRP + AL + E+ N + A +DG +A A++ + P +QA +S E +W KA +E+ +N + V R +G + ++ +K + G V +YK RLVA+GF Q GV + YS IR++L++ AK DA+ AFL +D+ E++++E+P + +L+KAIYGL QA + IGF A+ CV+ K + + V ++VDD++ AK +D L FK+K++G+ + +G I +R L Q Y++ + RF+ + + P SG+ L++ P E+E+MR PYR +G L++ T TRPD+A V ++RF ENPG H KA +++L+YL TKE+GI Y G + MEAYTD+D+G+ LD RRS+SG ++M+ + + S+ Q A ++EAEY+ALS +EVL+ R + + + +VGA V+EDN+GAI LA+N + RTK ++++HH +R+ + V YV +EDQ AD+LTK L
Sbjct: 270 DSGATAHMTPHRNDLFEYKDLDSDVEVTIADGKKIRVVGTGSVRL----TGIDGTRIKMIDVLFIPGLDRQLLSVSRLAER-GMIVEFQKKSCTIWNKSKAIALGKKVGKAYMLDCEKDMAHYVEYAG-------VDSEWELWHARMGHLNKDALAKTQRATTGMPTLDHKSMTICGGCMKGKQTVAHFPSRSLSKTTKVLQLVHTDVMGPMKTKSKGGARYVLTFVDDYSKYIVAYFITKKSEVPVKFKTFMNLYENQWGERIKCLRSDNGTEF---VNKEMDRLCALNGIVHQKTVPYSPQQNGVAERMNRTIMEKARSML-----YYKGITTMWWAEAVSTSVYLINRS-TTSTHSSMTPHELAFRDKPRLDHLRVFGSVGYAHVDKAKRTKLEPKSFKCMFLGYAENSKGYRVYDLESNKVKVTRSLKLDERE----VDGIYESTPTESTTDIHSTEDV-DEVV-----------QLEQEQQSATQA-----------------------------PVGSVEDNHEEDAAMPEAESDDSMRHGLTTYRT-TPGADFSDDLVFHPERERVRRPRDLIL--ALEDEYKVNDEEDPNNDDHFWPPSPKRARVDEDGLLAEAVLAYAASVGDADDAPTTYQQAMKSNEASKWIKAMNSELKAHADNGSWTLVRRTSGARPIGCRWVFAKKRNEHGRVVRYKARLVAKGFKQKFGVDFFETYSPVANMNSIRVVLSVVVAKAYVTEQLDADTAFLNSDLKEQVFMEVPYGILNAEHMMCKLDKAIYGLKQAASAWHQTIHAVFMKIGFHSCGADQCVYVKGTK-DNYVYVCLYVDDMIIAAKTNKEIDEVKMALKSAFKMKELGEVKFILGMEIDHDRTASTLMIKQTRYIDDVTSRFNQQDAKAVVNPCESGM-KLTKMQSPTTNAEREDMRNKPYRSLIGCLLYITTCTRPDVAYIVTQLSRFLENPGQQHWKAAIRVLRYLKTTKEFGIVYNGNNGKVAMEAYTDADWGSNLDDRRSVSGIMIMVGGAPVIFKSKYQRTVALSSAEAEYMALSLCTQEVLWTRTMLKDLGHE-QVGATQVWEDNQGAIALASNAGYNARTKHVDIRHHFIRENVARDIILVGYVGTEDQLADMLTKAL 1337
BLAST of mRNA_A-nodosum_M_contig97.29.1 vs. uniprot
Match: Q572I3_PHYIN (Putative polyprotein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=Q572I3_PHYIN) HSP 1 Score: 399 bits (1024), Expect = 1.550e-115 Identity = 344/1134 (30.34%), Postives = 522/1134 (46.03%), Query Frame = 1
Query: 1 DSGTTFHMSHTRAGMSAYKKASPGTNVEIADGNILPVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLSTVKAVEQWGKPLIYYRNKAVLGGLFSATGVRRIPRQEAALEVNLTENGLVKIASGAALRASASRDVMEVHRMLTHPSEDITRKTAEM-MGIE--TTGQWGACETCFQVKAKRHAVPKKTDERASVRGQRFFVDHS------SLGGNSYVVIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLSIKCIRTDNGGEFEGEFQRELDRRS-ITHEHTPPDTPQYNGVAERALGLSREKAIILMEELDDVINVPREKLWAQAMLFACDVTNKSVTTSTDGDKSPYELWFVKFSTADHLRRFGAVGYAR-QSVREHKMAPKGEKCVFMGIPRN------FPTGTVSVLLVRSRNIVERQAVQWIDGPKKTGGDAIG---SDNRGMKSAGDEIIVERGTPQLNVQELGQE---QQLTLHEHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQHEEGGAEPALGSANLEGPALXXXRKLTID---GNIPPILSSRTRSRRPHTGVEGEALHCFLPAIEAEEENGVEDALACDDGGQMAMQATLDTPEPRNRRQAKESQEWDEWRKAEETEMLGMVENCVYKQVARPKDKLVVGTKMLYKRKIGQDGEVEKYKCRLVAQGFWQVEGVHYTVKYSLTPATALIRMLLAMAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRC*NNKFCDDMTAIGFEQAKANPCVFRKVVDGEAEMVVIVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAGYNMGCHITRNRKTRELKFDQHLYVESMVKRFDVK--KTTKIPTASGVPTLSEADEPRNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKILQYLLHTKEWGITY--GGQGCG---LCMEAYTDSDFGACLDTRRSISGAVLMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVKEVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKDINVKHHLVRDASDARKVRVVYVRSEDQHADLLTKPL 3303
DSG T HM+ R + Y+ G NV IADG L V G G +++ G K ++M DV ++PGL R LLS K E+ G + + R+ V+ G +A + + L+ E V+ A + H + H ++D KT +GI G C C + K P ++ R + + D S GG YV+ FVDD +RF V F+K KS+ + L A Y T +KC+R+DNG EF + EL +R+ I H+ + P +PQ NGV+ER EKA ++ + WA+A+ A + N+S TS + D +PYEL F +HLR FG+ GYA V K+ PK KC F+G N + V + RS + ER+ D G I +D+ + +G E + P +E Q+ L L + H E S P L D G+ P SS R+R G+ EA+ + +I GV D P +A S E EWR+A ++E+ N + V R +G + ++ +K ++G V +YK RLVAQGF Q G+ + YS IR +LA+ + DA+ AFL + + +Y+++P + G L KAIYGL QA N GF+ A+ CV+ K A + V ++VDD++ AK + + L FK+K++G+A + +G I +R+ L Q Y++ +V+RF+ + K + P A+ + LS+ P +E+ EM PYR +G LM+ T TRPDIA V +ARF E+PG H KA +++LQYL T+ GI Y G G G + EA+TD+D+G+ +D RRS+SG ++M+ + + S+ Q A ++EAEY+ALS +EVL+ R + + M +VGA V+EDN+GAI LA+N RTK ++++HH +R+ + ++V Y+ ++ Q AD+LTK L
Sbjct: 251 DSGATSHMTPHRNDLFGYEALDSGINVTIADGKKLRVAGTGTVKL----TGLDGKRIRMVDVLHIPGLDRRLLSVGKLAER-GMSVAFQRSSCVIWGRNAAIASGKKVGKAFLLDCQQEEAHFVQYAG-------PDSEWELWHARMGHLNKDALTKTQRSTIGIPHVKNGNETLCGGCMKGKQTVTTFPSRSLTRTTRVLELVHTDVMGPMRTISKGGAKYVLTFVDDYSRFVVAYFMKSKSEVGSKLKEFKALYETQWGERLKCLRSDNGTEFVNKTVLELCKRNGIVHQRSVPYSPQQNGVSERMNRTIMEKARSMLH-----YKSMSTQWWAEAVSTAVYLINRSTNTS-NSDVTPYELSFQVKPRMEHLRVFGSQGYAHVNDVIRTKLEPKSFKCTFLGYAENVKGYRVYDMDASKVKVTRSVKLDEREVGGIYDTQSPASGTVIHVTRNDDTIVPISGVERTPAQDEPMEEAEEPAQDIEMDDLELERNAEIQQLPAPEEPRLNGLDLATFHSQPPSFHEDRMVFHPE-----TERSTRPREPLLLLGNGDDEDVERGSDGP--SSPKRTRIDEDGLLAEAVLAYAASI-----GGVPDT-------------------PNTYAEAIASNEAGEWRRAMQSELNSHSRNGTWTLVPRGTTTRSIGCRWVFTKKRDENGRVIRYKARLVAQGFKQKFGIDFFETYSPVANMNSIRAVLAVCVTCGYIMEQLDADTAFLNSCLVNLVYMDVPLGLENAEGMKCNLLKAIYGLKQAASAWNKTIHRVFLQNGFKCCGADQCVYVKR-SKNAFVYVCLYVDDMIIAAKTRDEIREVKNALKSAFKMKELGEAKFILGMEIDHDRECGTLMIKQTRYIDDIVERFNQRNAKMVEYPCAANL-KLSKMMSPTTEKERAEMWSRPYRSLIGCLMYITTCTRPDIAYVVTQLARFLEDPGTQHWKAAIRVLQYLKSTRHHGIVYKSGTSGFGTQAVKAEAFTDADWGSNIDDRRSVSGVMVMIGNAPVVFKSKYQRTVALSSAEAEYMALSLCTQEVLWTRAMLKDMGHE-QVGATQVWEDNQGAIALASNAGYHARTKHVDIRHHFIRENVERSTIKVAYIDTKQQLADMLTKAL 1332
BLAST of mRNA_A-nodosum_M_contig97.29.1 vs. uniprot
Match: A0A6G0QQ26_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=20 Tax=Phytophthora TaxID=4783 RepID=A0A6G0QQ26_9STRA) HSP 1 Score: 389 bits (998), Expect = 1.820e-115 Identity = 301/931 (32.33%), Postives = 462/931 (49.62%), Query Frame = 1
Query: 625 GGNSYVVIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLSIKCIRTDNGGEFEGE-FQRELDRRSITHEHTPPDTPQYNGVAERALGLSREKAIILM--EELDDVINVPREKLWAQAMLFACDVTNKSVTTSTDGDKSPYELWFVKFSTADHLRRFGAVGYAR-QSVREHKMAPKGEKCVFMGIP------RNFPTGTVSVLLVRSRNIVERQAVQWIDGPKKTGGDAIGSDNRGMKSAGDEIIVERGTPQLNVQELGQEQQLTLHEHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQHEEGGAEPALGSANLEGPALXXXRKLTIDGNIPPILSSR--TRSRRPHTG-------VEGEALHCFLPAIEAEEENGVEDA--------LACDDGGQMAMQATLDTPEPRNRRQAKESQEWDEWRKAEETEMLGMVENCVYKQVARPKDKLVVGTKMLYKRKIGQDGEVEKYKCRLVAQGFWQVEGVHYTVKYSLTPATALIRMLLAMAAAKDGELRHFDAEQAFLKADIDEEIYIEIPE---EFQEFPGAVGR------LNKAIYGLVQAGRC*NNKFCDDMTAIGFEQAKANPCVFRKVVDGEAEMVVIVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAGYNMGCHITRNRKTRELKFDQHLYVESMVKRFDVK--KTTKIPTASGVPTLSEADEPRNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKILQYLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSISGAVLMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVKEVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKDINVKHHLVRDASDARKVRVVYVRSEDQHADLLTKPL 3303
GG +Y V F+DD +R V F+KKK++ AD IK +R+DNGGE+ G F+ L ++ I HE T P TPQ NG+AER E A ++ E +D +K WA+A+ + + N+ +T K+PYE+ + K +L+ FGA+GY + K+ K KC F+G R F T V +VR+ +E + GD + ++ G GDE + P GQ Q LT+ E QHE +T D I P S TRSR H EG P+ + V A LA ++G MA + P+ +A Q+ DEW+KA +E+ ++ N +K V +P + +G + ++ K + G+V +YK RLVA+G+ Q G++Y YS IR +LA +A+ E+ D + AFL ++EEIY+E+ E E E A G L +++YGL QA R N + ++GFE A +PCV+ + +GE E +V ++VDD+L ++ KA + A + +KF++KDMG A + +G I N + R L Q Y ES++K+ + K P GV L++ADEP+ E+K +M+ PYR VG+LM+ + TRPDI+ AV ++RF ENPG H A +K+++YLL TK+ GI Y G G +EAY+D+D+ D RRS+SG +LML + W S Q+ A ++EAEY+ALS+ VKE +++R++ + + +VGA ++EDN+GA+ LA N TK I++++H +RD + + +V++ YV +++Q AD +TK L
Sbjct: 37 GGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKKFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERMNRSLVEMARCMLYHEGID-------KKWWAEAVNTSAWIINR--IPNTVAVKTPYEIVYQKKPQLKNLKVFGALGYEHIPDEKRRKLDAKAFKCRFLGYEDGVKGYRVFNVATGQVKIVRTVKFMETTST----------GDFM-TEVEGDDKDGDEDVA---APHATAPSHGQTQTLTIFNDEVVPL------------------------------QHE-----------------------VTTDTAIVPAPSHSMITRSRTRHIEETTDPKEAEGRKKQIVAPSAIGTKRQKVNQARVKPSDELLAIEEGQLMAATEEV----PKTYAEATTRQDQDEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKDRLVAKGYSQRHGINYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELLEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYNMERRTLGISQKAYTESIIKKVGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSSFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE-QVGATVIYEDNQGAMALAKNVGYQAGTKHIDIRYHFIRDKAVSNEVKLEYVDTKNQLADFMTKGL 883
BLAST of mRNA_A-nodosum_M_contig97.29.1 vs. uniprot
Match: A0A6A3JDE6_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JDE6_9STRA) HSP 1 Score: 385 bits (990), Expect = 2.720e-114 Identity = 301/930 (32.37%), Postives = 458/930 (49.25%), Query Frame = 1
Query: 625 GGNSYVVIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLSIKCIRTDNGGEFEGE-FQRELDRRSITHEHTPPDTPQYNGVAERALGLSREKAIILM--EELDDVINVPREKLWAQAMLFACDVTNKSVTTSTDGDKSPYELWFVKFSTADHLRRFGAVGYARQ-SVREHKMAPKGEKCVFMGIP------RNFPTGTVSVLLVRSRNIVERQAVQWIDGPKKTGGDAIGSDNRGMKSAGDEIIVERGTPQLNVQELGQEQQLTLHEHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQHEEGGAEPALGSANLEGPALXXXRKLTIDGNIPP------ILSSRTRSRRPHTG---VEGEALHCFLPAIEAEEENGVE-------DALACDDGGQMAMQATLDTPEPRNRRQAKESQEWDEWRKAEETEMLGMVENCVYKQVARPKDKLVVGTKMLYKRKIGQDGEVEKYKCRLVAQGFWQVEGVHYTVKYSLTPATALIRMLLAMAAAKDGELRHFDAEQAFLKADIDEEIYIEIPE---EFQEFPGAVGR------LNKAIYGLVQAGRC*NNKFCDDMTAIGFEQAKANPCVFRKVVDGEAEMVVIVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAGYNMGCHITRNRKTRELKFDQHLYVESMVKRFDVK--KTTKIPTASGVPTLSEADEPRNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKILQYLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSISGAVLMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVKEVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKDINVKHHLVRDASDARKVRVVYVRSEDQHADLLTKPL 3303
GG +Y V F+DD +R V F+KKK++ D L IK R+DNGGE+ G F+ L ++ I HE T P TPQ NG+AER E A ++ E +D +K WA+A+ + + N+ T T K+PYE+ + K +L+ FGA+GY + K+ K KC F+G R T V +VR+ +E + GD + ++ G GDE + P GQ Q LT+ E QHE +T + I P I SRTR T EG P+ + V D L +GGQ+ M AT + P + +A Q+ DEW+KA +E+ ++ N +K V +P + +G + ++ K + G+V +YK RLVA+G+ Q G Y YS IR +LA +A+ E+ D + AFL ++EEIY+E+PE E E A G L +++YGL QA R N + ++GFE A ANPCV+ + +G+ E +V ++VDD+L ++ KA + A + + F++KD+G A + +G I + + R L Q Y ES++K+F + K P V L++ADEP+ E+K +M+ PYR VG+LM+ A TRPDI+ AV ++RF ENPG H A +K+++YLL TK+ I Y G G +EAY+D+D+ D RRS+SG +LML + W S Q+ A ++EAEY+ALS+ VKE +++R++ + + +VGA ++EDN+GA+ LA N RTK I++++H +R + +V + YV +++Q AD +TK L
Sbjct: 40 GGCTYAVTFIDDFSRHVTVYFMKKKTEVLEKFKMFKTDMENATGLKIKRHRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERMNRSIVEMARCMLYHEGID-------KKWWAEAVNTSAWMINRIPNTVTV--KTPYEIVYQKKPQLKNLKVFGALGYGHMPDEKRRKLDAKAFKCRFLGYEDGVKGYRVLNVATGQVKIVRTVKFMETTST----------GDFM-TEVEGDDKDGDEDVA---APHATAPSHGQTQTLTIFNDEVVPL------------------------------QHE-----------------------VTTETAIVPAPSHSMITRSRTRPNEETTDPEEAEGRKKQIVAPSAIGTKRQKVSQARVKPSDELLAIEGGQL-MAATEEVP--KTYAEATTRQDQDEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGTDYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELPEGLRELLELAEAEGEDDVDCMLLQSLYGLKQASRVWNETIDKHLNSMGFEPADANPCVYTRG-EGDDECIVCLYVDDMLIASRQKAVIASVKAGIAENFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPSV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVSIVYEGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSMFQKTVALSSTEAEYMALSDCVKECVWIRRLLKEIGAE-QVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIRKKVVSNEVELEYVDTKNQLADFMTKGL 886
BLAST of mRNA_A-nodosum_M_contig97.29.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA) HSP 1 Score: 383 bits (984), Expect = 3.000e-113 Identity = 299/930 (32.15%), Postives = 461/930 (49.57%), Query Frame = 1
Query: 625 GGNSYVVIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLSIKCIRTDNGGEFEGE-FQRELDRRSITHEHTPPDTPQYNGVAERALGLSREKAIILM--EELDDVINVPREKLWAQAMLFACDVTNKSVTTSTDGDKSPYELWFVKFSTADHLRRFGAVGYAR-QSVREHKMAPKGEKCVFMGIP------RNFPTGTVSVLLVRSRNIVERQAVQWIDGPKKTGGDAIGSDNRGMKSAGDEIIVERGTPQLNVQELGQEQQLTLHEHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQHEEGGAEPALGSANLEGPALXXXRKLTIDGNIPP------ILSSRTRSRRPHTG---VEGEALHCFLPAIEAEEENGVE-------DALACDDGGQMAMQATLDTPEPRNRRQAKESQEWDEWRKAEETEMLGMVENCVYKQVARPKDKLVVGTKMLYKRKIGQDGEVEKYKCRLVAQGFWQVEGVHYTVKYSLTPATALIRMLLAMAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEF---------PGAVGRLNKAIYGLVQAGRC*NNKFCDDMTAIGFEQAKANPCVFRKVVDGEAEMVVIVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAGYNMGCHITRNRKTRELKFDQHLYVESMVKRFDVK--KTTKIPTASGVPTLSEADEPRNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKILQYLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSISGAVLMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVKEVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKDINVKHHLVRDASDARKVRVVYVRSEDQHADLLTKPL 3303
G +Y V F+DD +R V F+KKK++ AD IK +R+DNGGE+ G F+ L ++ I HE T TPQ NG+AER E A ++ E +D +K WA+A+ + + N+ T T K+PYE+ + K +L+ FGA GY + K+ K KC F+G R T V +VR+ +E + GD + R K DE + P GQ Q +T+ + E QHE +T + I P I SRTR T EG P+ + V D L +GGQ+ M AT + P + +A Q+ DEW+KA +E+ ++ N +K V +P + +G + ++ K + G+V +YK RLVA+G+ Q G+ Y YS IR +L +A+ E+ D + AFL ++ EIY+E+PEE +E V L +++YGL QA R N ++ ++GFE A A+PCV+ + +GE E +V ++VDD+L ++ A + A + +KF++KDMG A + +G I + + R L Q Y ES++K+F + K P GV L++ADEP+ E+K +M+ PYR VG+LM+ A TRPDI+ AV ++RF ENPG H A +K+++YLL TK+ GI Y G G +EAY+D+D+ D RRS+SG +LML + + W S Q+ A ++EAEY+ALS+ VKE +++R++ + + +VGA ++EDN+GA+ LA N RTK I++++H VR+ + + +V++ YV +++Q AD +TK L
Sbjct: 61 GDCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVTYTPQQNGLAERMNRSLVEMARCMLYHEGID-------KKWWAEAVNTSAWIINRIPNTVTV--KTPYEIVYQKKPQLKNLKVFGAHGYGHIPDEKRRKLDAKAFKCRFLGYEDGVKGYRILNVATGQVKIVRTVKFMETTST----------GDFMTEVERDDK---DEDVA---APHATAPSRGQTQTITIFKDEVVPL------------------------------QHE-----------------------VTTETAIVPAPSHSTITRSRTRYIEATTDPEEAEGRKKQIVAPSAIGTKRQKVSQARVKPSDELLAIEGGQL-MAATEEVP--KTYAEATTRQDQDEWKKAIASELESLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLEKCSAEGMEIEQCDVDTAFLYEKLEAEIYMELPEELRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKNLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIASRQMAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGAQLEAYSDADWAGNRDDRRSVSGMLLMLCRAPVVWRSTFQKTVALSSTEAEYLALSDCVKECVWMRRLLKDIGAE-QVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFVREKAVSNEVKLEYVDTKNQLADFMTKGL 905
BLAST of mRNA_A-nodosum_M_contig97.29.1 vs. uniprot
Match: A0A6A3RIG2_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=35 Tax=Phytophthora TaxID=4783 RepID=A0A6A3RIG2_9STRA) HSP 1 Score: 385 bits (988), Expect = 1.140e-110 Identity = 334/1147 (29.12%), Postives = 525/1147 (45.77%), Query Frame = 1
Query: 1 DSGTTFHMSHTRAGMSAYKKASPGTNVEIADGNILPVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLSTVKAVEQWGKPLIYYRNKAVLGGLFSATGVRRIPRQEAALEVNLTENGLVKIASGAALRASASRDVMEVHRMLTHPS----EDITRKTAEMMGIETTGQWGACETCFQVKAKRHAVPKKTDERASVRGQRFFVDHSSL---------GGNSYVVIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLSIKCIRTDNGGEFEGE-FQRELDRRSITHEHTPPDTPQYNGVAERALGLSREKAIILMEELDDVINVPREKLWAQAMLFACDVTNKSVTTSTDGDKSPYELWFVKFSTADHLRRFGAVGYAR-QSVREHKMAPKGEKCVFMGIP------RNFPTGTVSVLLVRSRNIVERQAVQWIDGPKKTGGDAIGSDNRGMKSAGDEIIVERGTPQLNVQELGQEQQLTLHEHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQHEEGGAEPALGSANLEGPALXXXRKLTIDGNIPPILSSRTRSRRPHTG-------VEGEALHCFLPAIEAEEENGVE-------DALACDDGGQMAMQATLDTPEPRNRRQAKESQEWDEWRKAEETEMLGMVENCVYKQVARPKDKLVVGTKMLYKRKIGQDGEVEKYKCRLVAQGFWQVEGVHYTVKYSLTPATALIRMLLAMAAAKDGELRHFDAEQAFLKADIDEEIYIEIPE---EFQEFPGAVGR------LNKAIYGLVQAGRC*NNKFCDDMTAIGFEQAKANPCVFRKVVDGEAEMVVIVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAGYNMGCHITRNRKTRELKFDQHLYVESMVKRFDVK--KTTKIPTASGVPTLSEADEPRNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKILQYLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSISGAVLMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVKEVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKDINVKHHLVRDASDARKVRVVYVRSEDQHADLLTKPL 3303
DSG + HM+ R + K+ + IADG + G + + L T + DV Y+P + +L+S K E K ++ +K + V R ++ + + A+ S VH L H E + + + T C K + + ++ G + HS + GG +Y V F+DD +R V F+KKK++ AD IKCIR+DNG E+ G F+ L ++ I HE T P TPQ NG+AER ++++ M +K WA+A+ + + N+ T T K+PYE+ + K +L+ FGA+GY + K+ K KC FMG R T V +VR+ +E + G T + G D DE++ P G+ Q LT+ E QHE E A+ A P S+ TRSR H EG P+ + V D L +GGQ+ M AT + P+ ++ Q DEW+KA +E+ ++ N + V +P + +G + ++ K + G+V +YK RLVA+G+ Q G+ Y YS I +LA +A+ E+ D + AFL ++EEIY+E+PE E E A G L +++YGL QA R N + ++GFE A A+PCV+ + +GE E +V ++VDD+L ++ K + A + +KF++KD+G + + +G I + + R L Q Y ES++K+F + K P GV L++ADEP+ E+K +M+ PYR VG+LM+ A TRPDI+ AV ++RF ENPG A +K+++YLL TK+ GI Y G +EAY+D D+ D RRS+SG +LML + W S Q+ A ++EAEY+ALS+ V+E +++R++ E + +VGA ++EDN+GA+ LA N RTK I++++H +R+ + +V + Y+ +++Q AD +TK L
Sbjct: 258 DSGASSHMTSVRDKFVSMKELKTPVRITIADGKKIDAVAMGTVGMKLMDGTSVT----LSDVLYIPEVEGSLISVAKLAE---KDVVAQFSKDKCVFRYGDATVMEAKRCGNVYKLKTVGDEVCHAAT-----TSRKEPWAVVHARLGHIPYKRYEQLLTMADGVPRVADTPSDRVCAGYCMGKMREDNFSRNPEKTVKSAGVLDLI-HSDVMGPMQTKTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKMFKADMENATGRKIKCIRSDNGREYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERM-----NRSLVEMARCKLYHEGIDKKWWAEAVNTSAWIINRIPNTVTV--KTPYEIVYQKKPQLKNLKVFGALGYVHIPDEKRRKLDAKVFKCRFMGYEDGVKGYRVLDVETGQVKIVRTVKFMETTST----GDFMT--EVEGDDK-------DEVVA---APHATAPSHGETQTLTIFNDEVVPL------------------------------QHEVT-TETAIVPA--------------------PSHSTITRSRTRHIEETTDPEEAEGRKKQIVAPSAIGTKRQKVNQARVKPSDELLAIEGGQL-MAATEEVPKTYAEETTRQDQ--DEWKKAIASELESLIANKTWMLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSILAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELPEGLRELLELAEAEGEDAIVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIASRQKTVIASVKAGIAEKFRIKDLGRSRFILGIEIDYDMERRTLGISQKAYTESIIKKFAQENVKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKRWDAGIKVVRYLLKTKDVGIVYDGLLVAQ-LEAYSDEDWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVQECVWMRRLLEDIGAE-QVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSNEVELEYMDTKNQLADFMTKGL 1310
BLAST of mRNA_A-nodosum_M_contig97.29.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE) HSP 1 Score: 387 bits (994), Expect = 3.520e-110 Identity = 309/982 (31.47%), Postives = 472/982 (48.07%), Query Frame = 1
Query: 535 VKAKRHAVPKKTDERASVRGQRFFVDHS------SLGGNSYVVIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLS-IKCIRTDNGGEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLSREKAI---ILMEELDDVINVPR-EKLWAQAMLFACDVTNKSVTTSTDGDKSPYELWFVKFSTADHLRRFGAVGYARQSVREHKMAPKGEKCVFMGIPRNFPTGTVSVLLVRSRNIVERQAVQWIDGPKKT--------------GGDAIGSD--------------------NRGMKSAGDEIIVERGTPQLNVQELGQEQQLTLHEHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQHEEGGAEPALGSANLEGPALXXXRKLT--IDGNIPP-----ILSSRTRSRRPHTGVEG-EALHCFL-PAIEAEEENGVEDALACDDGGQMAMQATLDTP-EPRNRRQAKESQEWDEWRKAEETEMLGMVENCVYKQVAR-PKDKLVVGTKMLYKRKIGQDGEVEKYKCRLVAQGFWQVEGVHYTVKYSLTPATALIRMLLAMAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRC*NNKFCDDMTAIGFEQAKANPCVFRKVVDGEAEMVVIVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAGYNMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKTTKIPTASGVPTLSEADEPRNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKILQYLLHTKEWGITYGGQGC--GLCMEAYTDSDFGACLDTRRSISGAVLMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVKEVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKDINVKHHLVRDASDARKVRVVYVRSEDQHADLLTKPL 3303
V+ + A+ +K E +R R FVD S+GG Y +I DD TR + F++ KSD +A S +A S ++ +R+DNGGEF GEF + I E TP +PQYNGVAER LGL E A+ I + L + +P+ +KLWA+AM +AC+ N + ++ KSPYE+W+ + A F Y + R K+ PKGE C ++G R+ P VL R+ I E + V W P + GG+ +D N + +G+ I V ++ +G+ X Q+ + A P R + D N P + RTR++ + L L P E N + D ++ + D EP + ++A++S+ W A E+ G++ + + P V+ + ++K K + G++ K K RLVA+GF Q GV Y +S T A IR+L+A+A D EL H+D EQAF+++ +D E+++++P G V RLNK++YGL QA R + D+ IGFEQ+ ++PCV R ++ E +V +HVDDIL +A K+ LG K++G+ + +GC R+R+ ++ Q Y+ S+++RF + +T+ IP S A++ R+ E EE P+RE VG LMW A TRPDI+ AVRAVAR P KA KIL YLL T + Y + Y D+DF + RRS+SGA++++A ++W S Q+ + TSEAEY+A+ + VKE LF+ + +F+ PS+ ++V EDNEGAI LA N +S R+K I+V+HH +R+ ++ + + +V SE QHAD+LTK L
Sbjct: 311 VQLDQAAIARK--ELPLLRIGRVFVDLGGKKAVVSVGGKYYPMIVKDDFTRRAWIYFLRNKSDAASAFRSFLASVRADGIPSLVETVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPYP-FLKPAYCKWQ-RPSKLFPKGESCFYVGPSRDHPRDCHRVL-TRAGTIQETRDVTWEALPSQLPPPQPPLPIEIAEEGGEESDNDVETEVWPLVGRGVAHTLLRNNAAVVPSGEAIDV---VESVDAGSVGRSPSPXXXXXXXVPSVSSPAPEFTDGDGQGGQDVGEIESMGPGDQETDPVXXXXXEVEAEASPPVARRPRHVAELADFNNPARENDEVREGRTRAQTRAVNQQSVPGLVATLGPVFATEIINSLLAEQRAGDAVELPKELVQDVESEPGSYQEARQSKHAAIWDGAMSAEVEGLIRAGTFTLAVKIPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFRQKYGVDYLETFSPTANAASIRLLVALACKYDLELLHWDIEQAFVQSKLDHEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSDLKRIGFEQSLSDPCVLRFMMGDEVLGMVAIHVDDIL-YAGTKSLAKVVVEALGDSLPTKNLGEVKFFLGCAFIRDREAGTIEISQESYIRSVLERFKICRTSSIPA-------SPANDNRSVMEDEEAGDVPFREVVGCLMWVANGTRPDISNAVRAVARHSHEPKKRDWKAAQKILNYLLATAHLTLKYKRDSTVDDVGTLVYVDADFASKATDRRSVSGALVIVAACLVAWLSWTQKCVSQSTSEAEYLAMGDGVKESLFVNGMLQFLRPSVEPRKIDVLEDNEGAIALAENPLSSCRSKHIDVRHHFLRNLTEEGVIEITHVPSEKQHADILTKAL 1276
BLAST of mRNA_A-nodosum_M_contig97.29.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE) HSP 1 Score: 369 bits (947), Expect = 1.110e-107 Identity = 289/954 (30.29%), Postives = 453/954 (47.48%), Query Frame = 1
Query: 643 VIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLS-IKCIRTDNGGEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLSREKAI---ILMEELDDVINVPR-EKLWAQAMLFACDVTNKSVTTSTDGDKSPYELWFVKFSTADHLRRFGAVGYARQSVREHKMAPKGEKCVFMGIPRNFPTGTVSVLLVRSRNIVERQAVQW----IDGPKKTGGDAIGSDNRGMKSAGDEI------IVERGTPQLNVQELGQEQQLTLHEHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQHE------EGGAEPALGSANLEGPALXXXRK----------------LTIDGNIPPILSSRTR----------SRRPHTGVEGEALHCFLPAIEAEEENGVEDALA----------------CDDGGQMAMQATLDTPE-PRNRRQAKESQEWDEWRKAEETEMLGMVENCVYKQVAR-PKDKLVVGTKMLYKRKIGQDGEVEKYKCRLVAQGFWQVEGVHYTVKYSLTPATALIRMLLAMAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRC*NNKFCDDMTAIGFEQAKANPCVFRKVVDGEAEMVVIVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAGYNMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKTTKIPTASGVPTLSEADEPRNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKILQYLLHTKEWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSISGAVLMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVKEVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKDINVKHHLVRDASDARKVRVVYVRSEDQHADLLTKPL 3303
+I DD TR + F++ KSD +A + +A S ++ +R+DNGGEF GEF + I E TP +PQYNGVAER LGL E A+ I + L + +P+ +KLWA+AM +AC+ N + ++ SPYE+W+ + A F Y R R K+ PKGE C ++G R+ P VL R+ I E + V W P I G + + D + +V RG ++ + E E EG G + P + ++ PP + R R + R + V A+ + G+ +L D ++ + D P + ++A+ S+ W A E+ G++ + A+ P V+ + ++K K + G++ K K RLVA+GF Q GV Y +S T A R+++A+A + EL H+D EQAF+++++D E+++++P G V RLNK++YGL QA R + ++ IGFEQ+ ++PCV R ++ E +V +HVDDIL +A K+ + A LG K++G+ + +GC R+R+ ++ Q Y+ S+++RF+V +T+ IP S ++ R+ E E P+RE VG+LMW A TRPDI+ AVRAVAR P +H KA KIL YLL T + + Y D+DF + + RRS+SGA++++A + W S+ Q+ + TSEAEY+A+ + VKE LF+ + +F+ PS + ++V EDNEGAI LA N +S R+K I+V+HH +R+ ++ + V +V SE+QHAD+LTK L
Sbjct: 1 MIVKDDFTRRIWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPYP-FLKPAYCRWQ-RPTKLLPKGESCFYVGPSRDHPRDCHRVL-TRAGTIQETRDVTWEVLQSQLPPLQPSLPIEVAEEGGEDSDDNVETEVWPLVGRGVAHTLLKRDAVPSGARVEEVESVGAGSVGPSFSVPSSPAEPSSLANNSFDSVASVSSPMPVNDGEGQGGQESGELEMGDPGGDDEEESMEQXXXXXXXXXXXXXPVEAEAPPPAARRPRHVAELADFNTASRENDEVREGRTRAQTRAVNQQSVPGLVASLGPISATELVYTLMSEQRAGDETELPKELVQDVESVPDSYQEAQRSKYAKIWEGAMSAEVEGLIRAGTFTLAAKVPISCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDIL-YAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPA-------SPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKAL 943 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig97.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig97.29.1 >prot_A-nodosum_M_contig97.29.1 ID=prot_A-nodosum_M_contig97.29.1|Name=mRNA_A-nodosum_M_contig97.29.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=750bp MSHTRAGMSAYKKASPGTNVEIADGNILPVDGFGRIEVDLDQPGRTTKMVback to top mRNA from alignment at A-nodosum_M_contig97:378260..381625+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig97.29.1 ID=mRNA_A-nodosum_M_contig97.29.1|Name=mRNA_A-nodosum_M_contig97.29.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3366bp|location=Sequence derived from alignment at A-nodosum_M_contig97:378260..381625+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig97:378260..381625+ >mRNA_A-nodosum_M_contig97.29.1 ID=mRNA_A-nodosum_M_contig97.29.1|Name=mRNA_A-nodosum_M_contig97.29.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=2250bp|location=Sequence derived from alignment at A-nodosum_M_contig97:378260..381625+ (Ascophyllum nodosum dioecious)back to top |