mRNA_A-nodosum_M_contig9697.1.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9697.1.2
Unique NamemRNA_A-nodosum_M_contig9697.1.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9697.1.2 vs. uniprot
Match: D8LGA2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGA2_ECTSI)

HSP 1 Score: 516 bits (1328), Expect = 1.320e-176
Identity = 272/460 (59.13%), Postives = 322/460 (70.00%), Query Frame = 1
Query:    1 DKKNNSLEGVYGPVDHEFSQECEVVGELPEAMNGEFARNGPNPRFRPSGGYHWFDGDGMVHGVRITAGSEAIYSNRYVRTKKLAVEEEAGKPVQMKIGDFCSRLALAKIWLHSLKKKLGVIPDLSAELEGTANTSLVYHAGRLMALVENALPYALRVMCDGVIETMGKATFEGEMKNPFTAHPKKDPATGKLYAFGYQVRHAQVEKPPYVTFYVLDADGKLERQARESQSNTFP-VDVPRAIMMHDFHITENYAIFMDLPLLFNKERVLSGDMPFVFDKSQGARMGVLPLDATDASGMRWFDLPEVFFAFHVLNAWEEQVEAKSSAGGAAPAYHSAVKIITSDMFELELDSTKVERDLPDGQRTDPHVTTLNLDTGEALR-AKLSAQAND*GYDFPQVRHSLLGRKARFGYYAGFDNKHYPNAVVKVDLQAATPEEIVVGRIDLGD*-VGGSSSSSPRSP 1371
            DK N  L  VY PVD E ++ CEVVG LPEA+NG  ARNGPNP+F+P  GYHWFDGDGMVH VRI AG +A YSNRYVRT+KL  EEEAG+ V +K+GD  S + + K+ L+SLK KLG+IPDL   LE TANTSL +HAGRL AL E  LPYALRVMCDGVIET+GKATF+G+MK PFTAHPKKDP TGKLYAFGYQ   +     PYVT+YVLD +GKLERQ        FP VDV R IMMHDF IT+NYA+F+D PLLF  E +L+G +PFVFD++ G+RMG+L LDA+D+S MRWFD+P+ +FAFHVLNAWEE +E     GG AP   S +KI T D   L++D  K    +        H   LNLDTGE +R + L  +    G DFPQ+R SL+GRK RFGY   F++K    A +KVDLQAA PE   VGRID  D  VGG     P  P
Sbjct:   20 DKDNLFLSKVYAPVDEETTRACEVVGVLPEALNGTVARNGPNPKFKPKAGYHWFDGDGMVHSVRIKAG-KATYSNRYVRTEKLRTEEEAGEAVAVKLGDMASLVGIPKMLLYSLKVKLGIIPDLIDALETTANTSLDFHAGRLFALCEGGLPYALRVMCDGVIETIGKATFDGQMKAPFTAHPKKDPDTGKLYAFGYQFTDST---KPYVTYYVLDKNGKLERQ--------FPIVDVKRPIMMHDFAITKNYAVFLDFPLLFKPELMLTGQIPFVFDETAGSRMGILRLDASDSSEMRWFDMPQAYFAFHVLNAWEETMEQTGGPGGVAPNTSSVIKIHTCDTKHLDMDFRKAAHGVDQDSLPFLHTVILNLDTGEVIRYSVLPEKPFSEGMDFPQLRRSLVGRKNRFGYCTTFNSKGDAAAELKVDLQAAKPELAQVGRIDYEDGFVGGECIFIPSKP 467          
BLAST of mRNA_A-nodosum_M_contig9697.1.2 vs. uniprot
Match: D8LPR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPR0_ECTSI)

HSP 1 Score: 513 bits (1320), Expect = 1.060e-175
Identity = 261/460 (56.74%), Postives = 325/460 (70.65%), Query Frame = 1
Query:    1 DKKNNSLEGVYGPVDHE-FSQECEVVGELPEAMNGEFARNGPNPRFRPSGGYHWFDGDGMVHGVRITAGSEAIYSNRYVRTKKLAVEEEAGKPVQMKIGDFCSRLALAKIWLHSLKKKLGVIPDLSAELEGTANTSLVYHAGRLMALVENALPYALRVMCDGVIETMGKATFEGEMKNPFTAHPKKDPATGKLYAFGYQVRHAQVEKPPYVTFYVLDADGKLERQARESQSNTFPVDVPRAIMMHDFHITENYAIFMDLPLLFNKERVLSGDMPFVFDKSQGARMGVLPLDATDASGMRWFDLPEVFFAFHVLNAWEEQVEAKSSAGGAAPAYHSAVKIITSDMFELELDSTKVERDLPDGQRTDPHVTTLNLDTGEALRAKLSAQAND*--GYDFPQVRHSLLGRKARFGYYAGFDNKHYPNAVVKVDLQAATPEEIVVGRIDLGD*VGGSSSSSPRSP 1371
            DK N  L GV+ PV  E  ++ECEVVG LPE + GEF RNGPNPRF P GGYHWFDG GMVHGVRI     A Y+NR++RTK+L  EEEAG+ + + +GD  S+L++ K+ L +LK+KLGV+PD  A  E  ANTSL +HAGRLMAL E  +PYALRVMCDGVIET+G+ +FEG+++ PFTAHPKKDPATGKLY FGYQ+     +  P++T YVLDADGK+ERQ        FPVDV RA  MHDF I+ENY +F+D+PL+F  E +L G  P V+D + GARMGVL LDATDASG++WFD+PE F  FHV+NAWEEQVEA  +A        + +K++T DMFEL LD   + ++   GQ   P+ TTLNL+T +A RA L  Q+     G DFPQ+R SL+GRK R+GY+  FD      A+VK+DLQA TPE  VVGRID G+ VGG     P +P
Sbjct:   21 DKDNKFLNGVFAPVHEENTAEECEVVGTLPEVVCGEFVRNGPNPRFMPKGGYHWFDGLGMVHGVRIKPSGAAFYTNRFIRTKRLQAEEEAGEALGVTMGDLSSKLSVPKLLLSTLKEKLGVLPDFRALRETNANTSLEFHAGRLMALQEAGVPYALRVMCDGVIETLGRTSFEGKLETPFTAHPKKDPATGKLYGFGYQM-----QGNPFLTMYVLDADGKIERQ--------FPVDVGRATAMHDFAISENYCVFLDVPLVFKGENLLKGKFPLVYDDTLGARMGVLRLDATDASGIQWFDMPECFMTFHVVNAWEEQVEANGTAT-------TVLKVVTCDMFELSLDQNDLNQETTVGQHARPYTTTLNLETSKATRACLVPQSQPPTEGLDFPQIRKSLVGRKNRYGYFIAFDAGGLAAALVKIDLQA-TPETAVVGRIDHGEWVGGEGLFVPSNP 459          
BLAST of mRNA_A-nodosum_M_contig9697.1.2 vs. uniprot
Match: D8LGA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGA3_ECTSI)

HSP 1 Score: 503 bits (1295), Expect = 1.070e-171
Identity = 262/461 (56.83%), Postives = 316/461 (68.55%), Query Frame = 1
Query:    1 DKKNNSLEGVYGPVDHEFSQECEVVGELPEAMNGEFARNGPNPRFRPSGGYHWFDGDGMVHGVRITAGSEAIYSNRYVRTKKLAVEEEAGKPVQMKIGDFCSRLALAKIWLHSLKKKLGVIPDLSAELEGTANTSLVYHAGRLMALVENALPYALRVMCDGVIETMGKATFEGEMKNPFTAHPKKDPATGKLYAFGYQVRHAQVEKPPYVTFYVLDADGKLERQARESQSNTFP-VDVPRAIMMHDFHITENYAIFMDLPLLFNKERVLSGDMPFVFDKSQGARMGVLPLDATDASGMRWFDLPEVFFAFHVLNAWEEQVEAKSSAGGAAPAYHSAVKIITSDMFELELDSTKVERDLPDGQRTDPHVTTLNLDTGEALRAKL--SAQAND*GYDFPQVRHSLLGRKARFGYYAGFDNKHYPNAVVKVDLQAATPEEIVVGRIDLGD*-VGGSSSSSPRSP 1371
            DK N  L  VY PVD E ++ CEVVG LPEA+NG  ARNGPNP+F+P  GYHW+DGDGMVH V+I AG +A YSNRYVRT+KL  EEEAG+PV M  GD  S + + K+ L SLK KLG++PDL A LE TANTSL +HAGRL AL E  LPYALRVMCDGVIET+G+ATF+G+MK PFTAHPKKDP TGKL+AFGYQ +       PYVT+YVLD +GKLERQ        FP V + R IMMHDF IT+NYA+F+D PLLF  E +L+G +P  FD++ G+RMGVL LDA+D+S M WFD+P+ + A HVLNAWEE +E      G AP   S +KI T D+  L +D  K+   +   +    H  TLNLDTGE  R  +  S++    G DFPQ+R SL+GRK RFGY    D K    A  K+DLQAATP++  VGRID  D  VGG     P  P
Sbjct:   20 DKDNLFLSKVYAPVDEETTRACEVVGALPEALNGTLARNGPNPKFKPKAGYHWYDGDGMVHSVQIKAG-KATYSNRYVRTEKLRAEEEAGEPVAMNFGDMASMVVIPKMLLSSLKVKLGIVPDLDAALETTANTSLDFHAGRLFALCEGGLPYALRVMCDGVIETIGQATFDGQMKAPFTAHPKKDPDTGKLHAFGYQFKD---NTKPYVTYYVLDTNGKLERQ--------FPIVGIKRPIMMHDFAITKNYAVFLDFPLLFKPELILAGKVPIAFDETAGSRMGVLRLDASDSSEMLWFDMPQTYCALHVLNAWEETMEKTGGPAGIAPTKTSVIKIHTCDISRLTMDFRKLSHGVDQDELAILHTVTLNLDTGEVTRESVLPSSRTLSEGMDFPQLRRSLVGRKNRFGYCTVMDMKGDAIAEAKIDLQAATPKQAQVGRIDYEDGFVGGECIFIPSKP 468          
BLAST of mRNA_A-nodosum_M_contig9697.1.2 vs. uniprot
Match: A0A6H5KSQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSQ0_9PHAE)

HSP 1 Score: 502 bits (1292), Expect = 1.960e-171
Identity = 262/461 (56.83%), Postives = 315/461 (68.33%), Query Frame = 1
Query:    1 DKKNNSLEGVYGPVDHEFSQECEVVGELPEAMNGEFARNGPNPRFRPSGGYHWFDGDGMVHGVRITAGSEAIYSNRYVRTKKLAVEEEAGKPVQMKIGDFCSRLALAKIWLHSLKKKLGVIPDLSAELEGTANTSLVYHAGRLMALVENALPYALRVMCDGVIETMGKATFEGEMKNPFTAHPKKDPATGKLYAFGYQVRHAQVEKPPYVTFYVLDADGKLERQARESQSNTFP-VDVPRAIMMHDFHITENYAIFMDLPLLFNKERVLSGDMPFVFDKSQGARMGVLPLDATDASGMRWFDLPEVFFAFHVLNAWEEQVEAKSSAGGAAPAYHSAVKIITSDMFELELDSTKVERDLPDGQRTDPHVTTLNLDTGEALRAKLSAQAND*--GYDFPQVRHSLLGRKARFGYYAGFDNKHYPNAVVKVDLQAATPEEIVVGRIDLGD*-VGGSSSSSPRSP 1371
            DK N  L  VY PVD E ++ CEVVG LPEA+NG  ARNGPNP+F+P  GYHW+DGDGMVH VRI  G +A YSNRYVRT+KL  EEEAG+PV M  GD  S + + K+ L SLK KLG++PDL A LE TANTSL +HAGRL AL E  LPYALRVMCDGVIET+G+ TF+G+MK PFTAHPKKDP TGKL+AFGYQ + +     PYVT+YVLD DGKLERQ        FP V + R IMMHDF IT+NYA+F+DLPLLF  E +L+G +P  FD++ G+RMGVL LDA+D+S M WFD+P+ + A HVLNAWEE +E     GG AP   S +KI T D+  L +D  K+   +   +    H  TLNLDTGE  R  +   ++    G DFPQ+R SL+GRK RFGY    D K    A  K+DLQAATP +  VGRI+  D  VGG     P  P
Sbjct:   32 DKDNLFLSKVYAPVDEETTRACEVVGALPEALNGTLARNGPNPKFKPKAGYHWYDGDGMVHSVRIKDG-KATYSNRYVRTEKLRTEEEAGEPVAMNFGDMASMVVIPKMLLSSLKVKLGIVPDLDAALETTANTSLDFHAGRLFALCEGGLPYALRVMCDGVIETIGQTTFDGQMKAPFTAHPKKDPDTGKLHAFGYQFKDSN---KPYVTYYVLDKDGKLERQ--------FPIVGIKRPIMMHDFAITKNYAVFLDLPLLFKPELILAGKVPIAFDETAGSRMGVLLLDASDSSEMLWFDMPQTYCALHVLNAWEETMEKTGGPGGVAPTKTSVIKIHTCDISRLTMDFRKLSLGVDQDELAILHTVTLNLDTGEVTRESVLPSSSTLLQGMDFPQIRRSLVGRKNRFGYCTIMDMKGDAIAEAKIDLQAATPNKAQVGRINYEDGFVGGECIFIPSKP 480          
BLAST of mRNA_A-nodosum_M_contig9697.1.2 vs. uniprot
Match: A0A6H5KG96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG96_9PHAE)

HSP 1 Score: 353 bits (906), Expect = 5.460e-116
Identity = 187/321 (58.26%), Postives = 217/321 (67.60%), Query Frame = 1
Query:    1 DKKNNSLEGVYGPVDHEFSQECEVVGELPEAMNGEFARNGPNPRFRPSGGYHWFDGDGMVHGVRITAGSEAIYSNRYVRTKKLAVEEEAGKPVQMKIGDFCSRLALAKIWLHSLKKKLGVIPDLSAELEGTANTSLVYHAGRLMALVENALPYALRVMCDGVIETMGKATFEGEMKNPFTAHPKKDPATGKLYAFGYQV-------------------------------------RHAQVEKPPYVTFYVLDADGKLERQARESQSNTFP-VDVPRAIMMHDFHITENYAIFMDLPLLFNKERVLSGDMPFVFDKSQGAR 849
            DK N  L  VY PVD E ++ CEVVG LPEA+NG  ARNGPNP+F+P  GYHWFDGDGMVH VRI AG +A YSNRYVRT+KL  EEEAG+ V +K+GD  S + + K+ L+SLK KLG+IPDL   LE TANTSL +HAGRL AL E  LPYALRVMCDGVIET+GKATF+G+MK PFTAHPKKDP TGKL+AFGYQV                                     R       PYVT+YVLD  GKLERQ        FP VDV R IMMHDF IT+NYA+F+D PLLF  E +L+G +PFVFD++ G+R
Sbjct:   19 DKDNPFLSKVYAPVDEETTRACEVVGVLPEALNGTVARNGPNPKFKPKAGYHWFDGDGMVHSVRIKAG-KATYSNRYVRTEKLRTEEEAGEAVVIKLGDMASLVGIPKMLLYSLKVKLGIIPDLIDALETTANTSLDFHAGRLFALCEGGLPYALRVMCDGVIETIGKATFDGQMKAPFTAHPKKDPDTGKLHAFGYQVPAIDPMFDANTMCLFVDELENLCLYWSVCSPCLLFSPRQFTDATKPYVTYYVLDKSGKLERQ--------FPIVDVKRPIMMHDFAITKNYAVFLDFPLLFKPELMLTGQVPFVFDETAGSR 330          
BLAST of mRNA_A-nodosum_M_contig9697.1.2 vs. uniprot
Match: A9Z0V7_ROSDA (Carotenoid cleavage dioxygenase 1 n=6 Tax=Rosoideae TaxID=171638 RepID=A9Z0V7_ROSDA)

HSP 1 Score: 310 bits (793), Expect = 4.770e-96
Identity = 189/453 (41.72%), Postives = 255/453 (56.29%), Query Frame = 1
Query:   19 LEGVYGPVDHEF--SQECEVVGELPEAMNGEFARNGPNPRFRPSGGYHWFDGDGMVHGVRITAGSEAIYSNRYVRTKKLAVEEEAGKPVQMKIGDFCSRLALAKIWLHSLKKKLGVIPDLSAELEGTANTSLVYHAGRLMALVENALPYALRVMCDGVIETMGKATFEGEMKNPFTAHPKKDPATGKLYAFGYQVRHAQVEKPPYVTFYVLDADGKLERQARESQSNTFPVDVPRAIMMHDFHITENYAIFMDLPLLFN-KERVLSGDMPFVFDKSQGARMGVLPLDATDASGMRWFDLPEVFFAFHVLNAWEEQVEAKSSAGGAAPAYHSAVKIITSDMFELELDSTK--VERDLPDGQRTDPHVTTLNLDTGEALRAKLSAQAND*GYDFPQVRHSLLGRKARFGYYAGFDNKHYPNAVVKVDLQAATPEEIVVGRIDLGD*VGGSSSSSP 1362
            L G + PV  E   +++  V+G LP+ +NGEF R GPNP+F P  GYHWFDGDGM+HG+RI  G +A Y +RYV+T +L  EE  G    MK+GD      L  +++  L+ KL V+ DLS    GT NT+ VYH G+L+AL E   PY L+V+ DG ++T+G   ++  +K+ FTAHPK DP TG+++ FGY         PPYVT+ V+  DG +         +  P+ VP  +MMHDF ITENYAIFMDLPL F  KE V  G + F FD+++ AR GVLP  A D   +RWF+LP  F  FH  NAWEE+ E               V ++T  +   +LD     +++ L D  + + +    NL TG A + KLS  A     DFP+V  S  GRK R+ Y    D+      +VK DL AA   EI   +I++G  V G     P
Sbjct:   59 LAGNFAPVIEETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGMRIKDG-KATYVSRYVKTSRLKQEEYFGGAKFMKVGDLKGLFGLLMVYMQQLRAKLKVL-DLSYG-HGTGNTAFVYHHGKLLALSEGDKPYVLKVLEDGDLQTVGLLDYDKRLKHSFTAHPKVDPFTGEMFTFGYS------HDPPYVTYRVISKDGFMH--------DPIPITVPAPVMMHDFAITENYAIFMDLPLYFRPKEMVKEGKLIFSFDETKKARFGVLPRYAKDDLLIRWFELPNCFI-FHNANAWEEEDE---------------VVLMTCRLENPDLDMVNGPIKKKL-DNFKNELYEMRFNLKTGLATQKKLSESA----VDFPRVNESYTGRKQRYVYGTTLDSIAKVTGIVKFDLHAAP--EIGKTKIEVGGNVQGLYDLGP 471          
BLAST of mRNA_A-nodosum_M_contig9697.1.2 vs. uniprot
Match: A9RJA4_PHYPA (Predicted protein n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A9RJA4_PHYPA)

HSP 1 Score: 304 bits (778), Expect = 5.550e-94
Identity = 175/434 (40.32%), Postives = 253/434 (58.29%), Query Frame = 1
Query:    4 KKNNSLEGVYGPVD-HEFSQECEVVGELPEAMNGEFARNGPNPRFRPSGGYHWFDGDGMVHGVRITAGSEAIYSNRYVRTKKLAVEEEAGKPVQMKIGDFCSRLALAKIWLHSLKKKLGVIPDLSAELEGTANTSLVYHAGRLMALVENALPYALRVMCDGVIETMGKATFEGEMKNPFTAHPKKDPATGKLYAFGYQVRHAQVEKPPYVTFYVLDADGKLERQARESQSNTFPVDVPRAIMMHDFHITENYAIFMDLPLLFNKERVLSGDMPFVFDKSQGARMGVLPLDATDASGMRWFDLPEVFFAFHVLNAWEEQVEAKSSAGGAAPAYHSAVKIITSDMFELELDSTKVERDLPDGQRTDPHVTT-------LNLDTGEALRAKLSAQAND*GYDFPQVRHSLLGRKARFGYYAGFDNKHYPNAVVKVDL 1281
            K N  ++  Y P D H+ +    VVG +PE MNGEF R GPNP+F+P   YHWFDGDGM+HG++I  G+ A Y +RYV+T +L  EE+ G    +K+GD      +  I LH L+ +LGVI DLS    GT NT+L+YH  +L+AL E   PYA+RV+ DG +ET+G+  + G++++PFTAHPK DP TG+++ FGY++     + PP +T+ V+  DG ++        +   + +P+ +MMHDF ITENYAIFMDLPLL + E ++ G+    FD+++ AR+GVLP  AT+ S +RWF +P V F FH  NAWEE  E               + + +  M E+ L +        DG + +  ++        +NL TGE  + +LS        DFP+V    +GRK ++ Y A  D +     V K DL
Sbjct:   42 KTNYWIKNNYAPADEHDPATNLHVVGTIPECMNGEFLRVGPNPKFQPVASYHWFDGDGMIHGLKIKDGN-ATYVSRYVKTSRLQQEEKYGAAKFLKMGDLRGPKGMLYIRLHKLRARLGVI-DLSRGA-GTGNTALIYHNKKLLALNEGDKPYAMRVLEDGDLETLGRVDYGGKLQHPFTAHPKVDPITGEMFTFGYEID----KSPPQITYRVISKDGIMQ--------DPVCIHLPQIVMMHDFAITENYAIFMDLPLLMDGESMMKGNFFIKFDETKEARLGVLPRYATNESQLRWFTIP-VCFIFHNANAWEEGDE---------------IVLHSCRMEEINLTTAA------DGFKENERISQPKLFEFRINLKTGEVRQKQLSVLV----VDFPRVNEEYMGRKTQYMYGAIMDKESKMVGVGKFDL 434          
BLAST of mRNA_A-nodosum_M_contig9697.1.2 vs. uniprot
Match: B8LMX1_PICSI (Uncharacterized protein n=2 Tax=Picea sitchensis TaxID=3332 RepID=B8LMX1_PICSI)

HSP 1 Score: 304 bits (778), Expect = 5.870e-94
Identity = 181/445 (40.67%), Postives = 258/445 (57.98%), Query Frame = 1
Query:   19 LEGVYGPVDHEFSQE-CEVVGELPEAMNGEFARNGPNPRFRPSGGYHWFDGDGMVHGVRITAGSEAIYSNRYVRTKKLAVEEEAGKPVQMKIGDFCSRLALAKIWLHSLKKKLGVIPDLSAELEGTANTSLVYHAGRLMALVENALPYALRVMCDGVIETMGKATFEGEMKNPFTAHPKKDPATGKLYAFGYQVRHAQVEKPPYVTFYVLDADGKLERQARESQSNTFPVDVPRAIMMHDFHITENYAIFMDLPLLFNKERVLSGDMPFVFDKSQGARMGVLPLDATDASGMRWFDLPEVFFAFHVLNAWEEQVEAKSSAGGAAPAYHSAVKIITSDMFELELD--STKVERDLPDGQRTDPHVTTLNLDTGEALRAKLSAQAND*GYDFPQVRHSLLGRKARFGYYAGFDNKHYPNAVVKVDLQAATPEEIVVGRIDLGD*VGG 1344
            L G + PV     +    VVG LP  ++GEF R GPNP+F P  GYHWFDGDGM+HG+RI  G +A Y +RYV+T +L  EE  GK   MKIGD      L  + +H L++KLGV+ D+S    GTANT+L+YH G+L+AL E   PY LRV+ DG ++T+G   ++ ++ + FTAHPK DP TG+++ FGYQ        PPYVT+ V+  +G +         +  P+ +P+ +MMHDF IT+NYAIFMDLPL F+ + ++ G +   +D ++ AR G+LP  A D   M+WF+LP  +  FH  NAWEE  E               V + T  + +L+L+  S  V+ ++ + Q  + +    NL +GEA + KLS  A     DFP++    +GRK R+ Y    D+      +VK DLQA    EI   +I++G  V G
Sbjct:   51 LSGNFAPVSETAPKSHLPVVGHLPSCLDGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDG-KATYVSRYVKTSRLKQEEYFGKAKFMKIGDLKGMFGLFIVQIHILREKLGVL-DMSYG-NGTANTALIYHHGKLLALQEADKPYVLRVLEDGDLQTLGLMDYDDKLAHSFTAHPKVDPITGEMFTFGYQ------HTPPYVTYRVVTKEGIM--------LDPVPITLPKPVMMHDFAITDNYAIFMDLPLYFSPKDMVKGGLIMSYDTTKKARFGILPRYAKDDLQMQWFELPNCYI-FHNANAWEEGDE---------------VILYTCRLPDLDLEMVSGAVKENMKNFQN-ELYEMRFNLKSGEASQKKLSESA----VDFPRINEKYIGRKQRYVYGTVLDSVTQVKGLVKFDLQAEP--EIGKSQIEVGGNVLG 455          
BLAST of mRNA_A-nodosum_M_contig9697.1.2 vs. uniprot
Match: A0A8J9RH61_9CHLO (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RH61_9CHLO)

HSP 1 Score: 303 bits (777), Expect = 7.610e-94
Identity = 183/447 (40.94%), Postives = 255/447 (57.05%), Query Frame = 1
Query:    7 KNNSLEGVYGPVDHEFS-QECEVVGELPEAMNGEFARNGPNPRFRPSGGYHWFDGDGMVHGVRITAGSEAIYSNRYVRTKKLAVEEEAGKPVQMKIGDFCSRLALAKIWLHSLKKKLGVIPDLSAELEGTANTSLVYHAGRLMALVENALPYALRVMCDGVIETMGKATFEGEMKNPFTAHPKKDPATGKLYAFGYQVRHAQVEKPPYVTFYVLDADGKLERQARESQSNTFPVDVPRAIMMHDFHITENYAIFMDLPLLFNKERVLSGD-MPFVFDKSQGARMGVLPLDATDASGMRWFDLPEVFFAFHVLNAWEEQVEAKSSAGGAAPAYHSAVKIITSDMFELELDSTKVERDLPDGQRTDPHVTTLNLDTGEALRAKLSAQAND*GYDFPQVRHSLLGRKARFGYYAGFDNKHYPN---AVVKVDLQAATPEEIVVGRIDLGD 1332
            KN  L   + PV  E + Q+ +VVG+LP+A++G +AR GPNP    +G YHWFDGDGMVH  RI  G  A YSNR V+T +L  E + G PV  + GD      +    L  L+ KLG+ P+   E  GTANT+LV+HA +L+AL E  LPYALR++CDGV++T+G+ TF  ++++PFTAHPK DP TG+L+  GYQ+     +KP  V +  LD +G L+   R        VD+   +MMHD  IT++YAI +D+PL+F  E +++ + +P V+DKS+ AR GVLP        +RWF+LP V   FHV NAW+E  +               +K+      + +LD    E DLPD  +      T NL TGEA     S Q  D   +FP+V   L+G + R+ Y A  D          +VK+DL +AT    V GR+  G+
Sbjct:   47 KNKYLADNFKPVSAETAHQDLKVVGKLPKALDGVYARTGPNPVLPITGDYHWFDGDGMVHACRIKDGKVA-YSNRLVQTHRLQRELKLGFPVYQRFGDMRGFWGVFHAGLSQLRLKLGITPE--KEGVGTANTALVFHANKLLALHEGDLPYALRILCDGVVDTLGRLTFGNKVRHPFTAHPKPDPVTGELFFIGYQMD----KKPACVWYAGLDKEGGLQFDVR--------VDLKEGVMMHDMAITQDYAILLDVPLVFRPEEMVTKNRLPLVYDKSRPARFGVLPKRPKSGKEVRWFELPPVMI-FHVANAWQESKD--------------VIKMFACCFEDFDLDIG--EEDLPDSYQPRMREMTFNLATGEAT----SRQLADVICEFPRVPDHLIGLRTRYTYAASMDGSKMAGKFEGIVKLDL-SATNGGAVAGRLSHGE 456          
BLAST of mRNA_A-nodosum_M_contig9697.1.2 vs. uniprot
Match: W1PVR9_AMBTC (Uncharacterized protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1PVR9_AMBTC)

HSP 1 Score: 300 bits (767), Expect = 2.410e-92
Identity = 183/458 (39.96%), Postives = 254/458 (55.46%), Query Frame = 1
Query:    4 KKNNSLEGVYGPVDHEFS--QECEVVGELPEAMNGEFARNGPNPRFRPSGGYHWFDGDGMVHGVRITAGSEAIYSNRYVRTKKLAVEEEAGKPVQMKIGDFCSRLALAKIWLHSLKKKLGVIPDLSAELEGTANTSLVYHAGRLMALVENALPYALRVMCDGVIETMGKATFEGEMKNPFTAHPKKDPATGKLYAFGYQVRHAQVEKPPYVTFYVLDADGKLERQARESQSNTFPVDVPRAIMMHDFHITENYAIFMDLPLLFNKERVLSGDMPFVFDKSQGARMGVLPLDATDASGMRWFDLPEVFFAFHVLNAWEEQVEAKSSAGGAAPAYHSAVKIITSDM--FELELDSTKVERDLPDGQRTDPHVTTLNLDTGEALRAKLSAQAND*GYDFPQVRHSLLGRKARFGYYAGFDNKHYPNAVVKVDLQAATPEEIVVGRIDLGD*VGGSSSSSPR 1365
            K N  L G Y PV  E    Q+  V G LP+ +NGEF R GPNP+F P  GYHWFDGDGMVHG+RI  G +A Y +R+V+T +L  EE  G+   +KIGD      L  +++  L  KL V+ D+S    GT NT+L++H GRL+AL E   PY ++V+ DG ++T+G   ++  +++ FTAHPK DP TG+++ FGY         PPYVT+ V+   G +         +  P+ +   +MMHDF ITENYAIFMDLPL F  + ++ G + F FD ++ AR GVLP  A D   +RWF+LP  F  FH  NAWE+  E               V +IT  +  F++EL+ T   +D     + + +    ++ TGEA + KLS  A     DFP++  +  GRK RF Y   F+      A+VK DL A    E    R+++G  V G     PR
Sbjct:   43 KPNYYLSGNYAPVSVETPPCQDLIVKGYLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMVHGMRIKDG-KAAYVSRFVKTSRLKQEEFFGRAKFLKIGDIKGVFGLFSVYMQVLCSKLKVL-DISYGT-GTGNTALIFHQGRLLALSEADKPYVIKVLEDGDLQTIGLLDYDKRLQHSFTAHPKVDPFTGEMFTFGYS------HTPPYVTYRVITKKGVM--------LDPVPITISDPVMMHDFAITENYAIFMDLPLYFRPKDMVKGKLVFTFDNTKKARFGVLPRYAKDELQIRWFELPNCFI-FHNANAWEDGNE---------------VVLITCRLEDFDMELE-TNSSKDKVANFKNELYEMRFHMKTGEASQRKLSESA----VDFPRINENYTGRKQRFVYGTTFEGITKVKAIVKFDLHAEP--ETGKTRLEVGGNVQGIFELGPR 460          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9697.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGA2_ECTSI1.320e-17659.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LPR0_ECTSI1.060e-17556.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LGA3_ECTSI1.070e-17156.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSQ0_9PHAE1.960e-17156.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG96_9PHAE5.460e-11658.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A9Z0V7_ROSDA4.770e-9641.72Carotenoid cleavage dioxygenase 1 n=6 Tax=Rosoidea... [more]
A9RJA4_PHYPA5.550e-9440.32Predicted protein n=4 Tax=Physcomitrium patens Tax... [more]
B8LMX1_PICSI5.870e-9440.67Uncharacterized protein n=2 Tax=Picea sitchensis T... [more]
A0A8J9RH61_9CHLO7.610e-9440.94Carotenoid 9,10(9',10')-cleavage dioxygenase 1 n=1... [more]
W1PVR9_AMBTC2.410e-9239.96Uncharacterized protein n=1 Tax=Amborella trichopo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9697contigA-nodosum_M_contig9697:6218..14246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LGA2
Preferred nameCCD1
PFAMsRPE65
Model size1460
Max annot lvl2759|Eukaryota
KEGG koko:K00465,ko:K11159
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0005911,GO:0006629,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008300,GO:0009056,GO:0009506,GO:0009987,GO:0010436,GO:0012505,GO:0016020,GO:0016042,GO:0016108,GO:0016110,GO:0016115,GO:0016116,GO:0016118,GO:0016119,GO:0016121,GO:0016122,GO:0016124,GO:0016491,GO:0016701,GO:0016702,GO:0030054,GO:0031090,GO:0042214,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045549,GO:0046247,GO:0051213,GO:0055044,GO:0055114,GO:0071704,GO:0071944,GO:0098588,GO:0098805,GO:1901575
Exons10
Evalue1.92e-143
EggNOG OGsCOG3670@1|root,KOG1285@2759|Eukaryota
Descriptionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
Cds size1074
COG categoryQ
BRITEko00000,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9697.1.2prot_A-nodosum_M_contig9697.1.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9697 6311..13781 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870489.0758169-UTR-A-nodosum_M_contig9697:6217..63101680870489.0758169-UTR-A-nodosum_M_contig9697:6217..6310Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9697 6218..6310 +
1680870489.3517354-UTR-A-nodosum_M_contig9697:13781..138981680870489.3517354-UTR-A-nodosum_M_contig9697:13781..13898Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9697 13782..13898 +
1680870489.3660243-UTR-A-nodosum_M_contig9697:14070..142461680870489.3660243-UTR-A-nodosum_M_contig9697:14070..14246Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9697 14071..14246 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870489.0902212-CDS-A-nodosum_M_contig9697:6310..63941680870489.0902212-CDS-A-nodosum_M_contig9697:6310..6394Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9697 6311..6394 +
1680870489.1041467-CDS-A-nodosum_M_contig9697:6815..69251680870489.1041467-CDS-A-nodosum_M_contig9697:6815..6925Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9697 6816..6925 +
1680870489.1185417-CDS-A-nodosum_M_contig9697:7488..76221680870489.1185417-CDS-A-nodosum_M_contig9697:7488..7622Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9697 7489..7622 +
1680870489.1344714-CDS-A-nodosum_M_contig9697:7889..80661680870489.1344714-CDS-A-nodosum_M_contig9697:7889..8066Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9697 7890..8066 +
1680870489.2141328-CDS-A-nodosum_M_contig9697:8432..85301680870489.2141328-CDS-A-nodosum_M_contig9697:8432..8530Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9697 8433..8530 +
1680870489.2256794-CDS-A-nodosum_M_contig9697:8713..88651680870489.2256794-CDS-A-nodosum_M_contig9697:8713..8865Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9697 8714..8865 +
1680870489.2426105-CDS-A-nodosum_M_contig9697:12204..122681680870489.2426105-CDS-A-nodosum_M_contig9697:12204..12268Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9697 12205..12268 +
1680870489.2609305-CDS-A-nodosum_M_contig9697:12491..126571680870489.2609305-CDS-A-nodosum_M_contig9697:12491..12657Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9697 12492..12657 +
1680870489.3347776-CDS-A-nodosum_M_contig9697:13692..137811680870489.3347776-CDS-A-nodosum_M_contig9697:13692..13781Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9697 13693..13781 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9697.1.2

>prot_A-nodosum_M_contig9697.1.2 ID=prot_A-nodosum_M_contig9697.1.2|Name=mRNA_A-nodosum_M_contig9697.1.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=358bp
MNGEFARNGPNPRFRPSGGYHWFDGDGMVHGVRITAGSEAIYSNRYVRTK
KLAVEEEAGKPVQMKIGDFCSRLALAKIWLHSLKKKLGVIPDLSAELEGT
ANTSLVYHAGRLMALVENALPYALRVMCDGVIETMGKATFEGEMKNPFTA
HPKKDPATGKLYAFGYQVRHAQVEKPPYVTFYVLDADGKLERQARESQSN
TFPVDVPRAIMMHDFHITENYAIFMDLPLLFNKERVLSGDMPFVFDKSQG
ARMGVLPLDATDASGMRWFDLPEVFFAFHVLNAWEEQVEAKSSAGGAAPA
YHSAVKIITSDMFELELDSTKVERDLPDGQRTDPHVTTLNLDTGEALRAK
LSAQAND*
back to top

mRNA from alignment at A-nodosum_M_contig9697:6218..14246+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9697.1.2 ID=mRNA_A-nodosum_M_contig9697.1.2|Name=mRNA_A-nodosum_M_contig9697.1.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=8029bp|location=Sequence derived from alignment at A-nodosum_M_contig9697:6218..14246+ (Ascophyllum nodosum dioecious)
GACAAGAAGAACAACTCTCTGGAGGGGGTGTACGGGCCCGTGGACCACGA GTTCTCTCAAGAGTGTGAAGTCGTGGGCGAGCTACCGGAAGCCATGAACG GGGAATTCGCTCGTAATGGGCCTAACCCTCGATTCCGCCCTTCAGGAGGG TATCACTGGTTCGACGGCGACGGTATGGTGAGCCGAAAAAGATTTCCGCC TTCCCTCCGCACCCCCCTGCCCTCTGCCGCGGGTGTGCGTCACGGGATCG GTGGCAAGACCGCGTGTGGCCCGTATTCGGTAGTGTTCCGTAAGCACGGC ATCATCCAGATTATGACCAAGTTCTTCAGGGTAGATGATGGTTGACAGCT GGCGGCCTATGCACGTACGATGCTCGCTCTTGAGTAATTTTACCAGCGTA TGTTTAAGTCGACTATATTTTAATTGAGGAATAATGTTGTACTTGGGCAG GAGTTGGCCGCAAAATCGTACGTGCAACCCCTGTTTCAACGGATTTGACC CTACTTCGAGTACGTCCCATCGTCAGCAAACGACATGCCAACTCTTGACG GGAACGGGTGATATGCTACAACCTCCCTATTGCTGCTTCCGTCTTCAGGT CCATGGCGTACGCATCACAGCGGGCAGTGAGGCAATCTACTCGAACCGCT ACGTAAGGACCAAAAAGCTCGCGGTTGAAGAAGAGGCCGGCAAGCCCGTG CAGATGAAGTGAGATATTCAAAGGTGTCGCAGCGTGCGGTTTGGGAGTGT TCCTGTAGGTTAATTTCTGGGGGGGTTTTCATTTTGTTTTCATCTCCATT CACCCCCGGGTGGCGTTGCTTTGCTAGCCAGGCGGAGGCAGCACCCGTCT CGCTCCCCCAAAACAATCGAGCTAGCGGTCAAACGACGGATATTTGAGAC CCGTCTGCCGAGTGACCGTTGTCGTACAAGCAGGTATTAAACACGATTGG AGTGATTGGTTAGCGCGGGCTCAATTTGTGGGTAGATGTATTTCTGTCGA CTACGGCGTGGGTTGCTCAGAGATCCTTGATTTGTCTTCATCAGCTCTTA GTACTTATTTGAAGACGCGCCGCTGTACTCTACCTACCGCGGTCTCTCCC GCATATTCAGATCACCTGCACTACTAGAAGAGCACACTACCCACTCTAGA AATCGCGCATGGTTGGGACGATTGTGGGAAAAGGCATCGGTTGACGAGCA ACCCCGCACTCTCGACCACGTTAACCATTGTCTACTAAAACCCATCCCTG TATCCGCCCGCTTCTCTCAAGGATTGGTGACTTTTGCTCGAGACTCGCGC TCGCCAAGATTTGGCTTCATTCTCTCAAGAAGAAGTTGGGCGTCATCCCC GACTTGAGCGCTGAATTAGAGGGTACAGCCAACACCTcCCTCGTGTACCA CGCAGGTGCGGGAAGAGTCGAtcTCTCGGCTACGGTCTACATCTATACGG GGTTCCAGAGCCTACGGCGTTTTCTACTCTCCTAAAGCTGCCAGAGTCAA CCAGGGTGTCAGCTCCTCGATTTACCCCGAAGGATCATCGTGATGTTAGG AGAATTGCTTCGATTCCGAGGAGCGCACAAAGTATCTAATTTTATAAGGG GCCTGGCTTGCGGAATGTTCTCGTCGATATATCTGGTGCTGATTTTTCCG TCTCGGTTTTGCTTTCCGACAGGACGTCTGATGGCTTTGGTAGAAAATGC CTTGCCGTATGCGCTGCGCGTAATGTGCGATGGCGTGATCGAGACGATGG GCAAGGCGACGTTCGAGGGTGAGATGAAGAACCCCTTCACCGCGCACCCG AAGAAGGACCCCGCTACCGGCAAGCTCTACGCATTTGGCTACCAGGTCAG TAGACGGTGTGAATGCTACGAACGGTGAGTGAGGCGTAAAGGTCGCGGAT AAATAGAGCCAGCGGCAACTCGATGCGATGCTGTTATTATATAACTGCCG CGGGCCAGCTAGGGTGACAAATCAGCTTTGTGTGTTATCCTGTCGTAGTT CAACGCGCTATGATGATGTCATGCATTATCGGGAAACAAATGTCCGCGCA TCTTGGCGTGCTCGATACACTGCGGAATGTATACCACGGCCCACACCATG GCCTGCGCCATGGCCCACGGTGCACGCGATTGGCGCGAACGTCACGTTTG CGGATAGGAATTCTCCGTTTGTGAGCTTACGCGCCACAATTGATGTTCCG TGTTTGTTGGTGGAGGGCACGCGCAGGTGGAAAAGCCGCCGTACGTGACA TTTTACGTCCTGGATGCCGACGGCAAGCTCGAGCGCCAGGCAAGAGAATC CCAGAGTAACACAGTGACAATTACAAATCCCGATTATGTCCTCGTATCTT ATGTCCGATACTCGATGCATCTAAAGCGCAAGTCCGACGCCTTCGCTTTT TTCCATCTTAACCTTCTGATCCCGCAGTCTCTTTTGCACACTTCCCGCCC ACTTGAATTGTTTGTCCGCACGTATTAAACAACTTGATATTTACAGTTCC CTGTGGACGTGCCACGGGCGATCATGATGCACGACTTCCACATCACGGAG AACTACGCCATCTTCATGGATCTCCCTCTACTGTTCAACAAGGAGCGCGT CTTGTCTGGTGACATGCCATTCGTATTCGATAAGAGTCAGGGAGCAAGGT GACAAAGCGCCGCGCGATCACCCTACCCGTCACCACATCAAAGATGTTCA GATGACCTTAAGCCGGATGATTGATAAGATGGTCGTAGATGAGGGACGGG CACTTCAGCCCTGCAGGTATAGATGAAACAAAAAGAAGCCTTGTATTATT CTCTACCCATACAGCACATAACCGTGCCGTGGGTACACACACGTGATACA CAACTACCAGGTACAACCACACGTAGGCAAAGTAACTTAGCTAATATAAG GGGTTGCGAACTCCATCCCCCTATGAGTAGCGCGTACCTACTGGTGTCAA CTCCACGTGGGTGAAACGGTTATTAAGTCGTTAAGTCGTTCACTCGAACA TCCCCTCGAGGAGATCACCGTTTCTTGCTTGTCTCCACGTTTAATTTCCT GGGTTCGTGAAGCTCGTTTCACACTCATTTCAATCAGTACATCCCCCTAG CTACCGAGACTTCAAATATCAAACAGTACATCCCCTAGCTACGAAGGATT TCTAATTTCAGACAAGACATCCCCTAGATAACTGCATATGCTCTACAGAG ACATGGCTAGACTTGGGATATTGTCATCCAAACTGCATGTAAATGCTATT CAAAGTCCAGTACATTATTACCAGATTAAAAAAACTTTATTGTCACCGCG GGAATCGAACTCATGACGTACGTTCGTTCTGAGCCGCAATACTTCAGTTT CTCTTCCATGATTTATTCCACTTACGTAAGTCACTTGAATTGAATCCAAA CGGATAAATATTTTATACTACTGTCGTAAGTTGCTCTAACTCAACGGTAG GGTTTTTACTGACGAACGATCCTACAACTGATCCATATTTTGTAGAGTCA GTTACTGCTGAAACATATTCGCATTCAGAACAACAGTTCAGACTTTTCTT CAAACAGCAGTAGGATCATCACCTCAAGTCAGTCGGCTACAGTTGGCGCG CAAATTGTTTTTAGATTCTTGTGTCAACCACAAGGCGGGCATGTAATGCT CAGCCCGTTCTCCAGGCTCTCTACAGTACCGTACCAATGTTAGAATCTAC TGGCCTGCTTCCAATTTTATTCAGACATGCGGCGTTCAATTACTCGGTGT TACAGCATCTATCTACAGAAATGAGGATTCCAATTATACTGTTGTAGCTC TAGGCTCTAGTACAACAGTGTACATTCTTCTTAATTCTTGCGCTCAACTG CATTGTATTTGAGTTTAATGTGCCGCGCACTAAGTCCAATATAAAAACAG TTACCGTCACATATCACAAGGCTTACAGTACTAGATCAGCTCTATCTTAG ACCATTTGCGCTACGATCAAACCGGGCGTTGCTTGTCATCGCCATCTTCA GATAGGGTAGTAGGCGAGACAACGCTTGTCCTCCGGTTGCGTACATCAGC GACTTGATTGGCGTCCAAGACCCGCGTCTCTCAGCTTGCTGATAAGTTTC ACCTGGATAGATCGATAATTTGGGAAAACAGAAAAAAAAAGAGAGCATAG ACGAAACAAAAAAGAAGCCTCGCAGCTCCGCCCAGACAGGCAGACAAGAA GCCTTCCAGCATCGCTCCCGGAAAAGAAAGGTAGAGGTACAGCCGCTTTC CAAGGCGTGGCTTGCTCTCCTCTTCCACCGGGTCGAACTGCTTGTTTTCT TCGCTGGATGTCTTTAGTCTGCGTTTTGACGGGGTGGCAGCTATCGATGA GGTTCCTGCAACCGTTGTCGTCGTACTCTCTTGACTGGCTCGCGTGTCCA CACTTTCCATCGGTGACGAACCTTCTTTGCTCGAATCCACGCCCGCGGTC AAAATGCTGTCGGCGGTGATTCGTTCAGATCTCCCCATACCCCCTCGTTC GGGGACTTTCCTGCTGTCCGGGCGTGTTGAGACCCGTACCAGCTAATGAT GATGAGTTCCTCCAACTCCTGGCTCATCGTGCCTCGTTGTTCTCCAACTT GACAAATGCATTTGACGGCATGTCGGGGTTAGGCGAGATGGGGCTACAGT GCTGTACGGAATCATCTCGTGTAACAGCGGTCATCTGTGCCTGTGCCTGC GCCTCCTTGCGACATCGCTTTTCCACGTACCGCTTGATCTCGGCAAGTTC CCAGTCCGGAAGTTTTCCTTGAGCCCGTCAACAAATTCTGCCGTCTTCTG CCAAGGTGTCCTGGCAGGCTTCGAGATTGCCTCCTTCAACGCGTCTACTT CTGCCCACAAGCTGGCATAGTATTGCTCCGGGGTGGGCGGAAGCGAGCGG TGGTCACAAGCCGATTTTTCTCGACAGCTTCAACTCGATCAAAGCCGTTC TCTCCTCCAGATTGCTAGCTCATTGTATAAAAGGAAATCTTTCACCTGCT TGAGATGATGATCGCATACAATCGCCTGCAACCTTCGGCGGTTCCGTTTC TCGCTCCGATTCGAAACAAATTCCCAATACTTCCTCTTGGGTCCAGCCTT TTTGTACCATGTCAGGAGAAATGACATTTTCACTTAGCTGTCAGAGGAGC TCGCCACCGGCGTCGCTTCCACTCCTGCGCTCGTTCTCCGACGGGCCACC CTGTGCCCGATCTCGTCGATCCCGCTCTCCTTCCGGCGGAGACGCTTCGC TCTTCGTGGCGGTGTCTTCAATCCTTCATCCAATACAAAAACGACACTGT CTCATCCAGGGTCCCAGACTTGAAGGCCGAAGACCTTTGCAGGCCTTCAA GGATTCCTTTCTTTTCCGCTTAGCATGTTCAGATGACCTTAAGCCGGATG ATTGATAAGATGGTCGTAGATGAGGGACGGGCACTTCAGCCCTGCAGGTA TAGATGAAACAAAAAGAAGCCTTGTATTATTCTCTACCCATACAGCACAT AACCGTGCCGTGGGTACACACACGTGATACACAACTACCAGGTACAACCA CACGTAGGCAAAGTAACTTAGCTAATATAAGGGGGGTATGAACTCCATCT CCCTATGAGTAGCGCGTACCTACTGGTGTCAACTCCCACGTGGGTGAAAC GGTTATTAAGTCGTTAAGTCGTTCACTCGAACAAAATATATCGGACCCTC GCTCCCACCTAGACACACAACACGCACCGTTACATTATATTGTAAGCTTG AGACTATACGTGTTTGCCTTGCAATATCGCACCTCGTGTCAGCATACTGT AAACGATTGTAGGTTGCATGTATGTGTCTATGCTGTGAGTCTATCACCTT AGACTCACCACAACCAGGGACAGGTCCTTCGATCACGCCTGCACTGACGA CGAGAGGTCTGAAGATTAACTTGATCCTTCTTCCCAACCGACGAACGCTG CTCATCACACTTGCCCCTCATGTACGATGTGTCCCAGGATGGGCGTGCTA CCGCTGGACGCCACGGACGCCTCTGGTATGCgatGGTTTGACCTGCCCGA GGTGCGGAGAAGCCTCCATTTCTGTGCGCTGCCCTTGTTCTTGCGCGAGA TGTTTCATCTGGCAGTAGTTAATCTGTACAAAACTGTTAATTATGTTATT GCCATCGTCTGACTCCACCGACAACGACTTAGTACCTTAATAATATTGCC GGAGTAGGAGTCAACCCCCCCCCTCCCCCCCTCCTGCGCCATCTTCCCAC CGAACGCCGGGGAGGAGCTAACAGGTGTTCTTCGCGTTTCACGTGCTGAA CGCTTGGGAGGAGCAAGTCGAGGCGAAGAGTTCGGCCGGCGGGGCGGCCC CGGCGTACCACTCTGCAGTGAAAATAATCACCAGCGACATGTTCGAGCTT GAATTGGACTCCACCAAGGTTGAACGAGATTTGCCCGACGGTGAGCGAGT CAGAACCGACGTGCAGGTGGTTTCACGTCTTTCCGATGTTCTCTGCGGCG AACATTTGTCCGTGGCGTGAAGTCCTTGGAGTTTCGTTACTGCGCTCAGC CTACCCTCCCACCCCCATGTATGGTCATCACATATATAGCAGAGTATGGA TTAACCGGGTAAGGTTGCCAATCCTCCTCGTGGTCAGCTGAACAGGGAAA ATTAATATTCCCCTGTCCCCGTACGCACCTAAGAATTTGGCCTCGCGAGA CGGATTCAGCCGTCCCGTCCCGCGTCAGCCTAATCATTCTCCATACTCAG GCTGAATCTGGTGCTTACTCACGAAATTCCTCCCGACTTCCGCGGCGGCG TCCATTTACTTATTATTCAAACCACCATACGACAGTGAGTCAGAAGTCCC GAGTTTATCGGGTCACGCAATTGCGTACCAATGGCGTTCACAGCCGAGAG TCCGTCGCCACAGGGCCAGTAGCCCTCAAGGTAGTTGCAGTAACGGGTGC TGCCATTTTGCAGATCACCATGGACCAATTAATGCGCGCCTCTATTTTCC CACGCCCGCTACTGGTACGAAGTGGGCGTGTCGATAGAATCCGAAATGTT ACTTTCGATGTTACGCGCACAGTGTATTAATAGTTGACGCTAGAAATCGC TATGCATTTGTCTATGTGCTGCCTAGGAATGGTGCACAATCGAAAGGAGT ACCTTAAAATGCTGAAGCTGGAATGGAATAGGGATGAATGTAAAAGAGGT GTGATTAGGCGGTCACGATGAACGATGAAGTTCACTCAACACAAGTGCTA AGACGCCAGTTGTTTCACCAAAACTTCAAGTCAATCAATAAATTTAGTTG AAATCGATCGAGCAGCATTCCCAATGTTTTTTTTTCCTCCACGCGTACGG CTCATTCATTCGGTCGAAAGACGTTTTCTACTAAAATTCTTTGATTTCGT GTAATAAACGTTTCTCTTTCTATTCTCTTCTCTTCCCCCCCAACTTCTAC CTTCCTGGTGGGGTTCCGATGACAGGCCAACGCACCGACCCGCATGTGAC CACTCTCAACCTGGACACCGGAGAAGCTTTACGGGCGAAGCTTTCGGCCC AGGCTAATGACTGAGGCTACGATTTcCCGCAAGTCCGCCATTCCTTACTG GGTAGAAAGGCCAGGTTCGGCTACTACGCGGGCTTTGACAACAAGCACTA TCCGAACGCGGTGGTCAAGGTCGACCTTCAGGTGGGAGGAACGCCTCGAG TAAGGAGTTGTAAAAATGTATTACGAGACTAccCCCCCACCCCATGCTCC CCATCAcaccCCCCCCCGGTTCAGCTCGAAATGAAAGTGATTTGGGCTGC TTAGAGCTACACATTCAAACATTGCTGTGCACGCCATTCCCTGCGTGTCG CAGGCGGCGACGCCCGAAGAGATTGTCGTCGGGCGCATTGACCTTGGGGA CTAGGTTGGCGGTAGTTCTTCTTCATCCCCTCGAAGCCCGACGATGACGT GCTTGCCGGGGTGGGAGAGGAGGACGATGGCTACCTGGCGACCTTCGTCT CCCCACGGGATGGCAGTAATTCAGGCAAG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig9697:6218..14246+

>mRNA_A-nodosum_M_contig9697.1.2 ID=mRNA_A-nodosum_M_contig9697.1.2|Name=mRNA_A-nodosum_M_contig9697.1.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at A-nodosum_M_contig9697:6218..14246+ (Ascophyllum nodosum dioecious)
ATGAACGGGGAATTCGCTCGTAATGGGCCTAACCCTCGATTCCGCCCTTC
AGGAGGGTATCACTGGTTCGACGGCGACGGTATGGTCCATGGCGTACGCA
TCACAGCGGGCAGTGAGGCAATCTACTCGAACCGCTACGTAAGGACCAAA
AAGCTCGCGGTTGAAGAAGAGGCCGGCAAGCCCGTGCAGATGAAGATTGG
TGACTTTTGCTCGAGACTCGCGCTCGCCAAGATTTGGCTTCATTCTCTCA
AGAAGAAGTTGGGCGTCATCCCCGACTTGAGCGCTGAATTAGAGGGTACA
GCCAACACCTcCCTCGTGTACCACGCAGGACGTCTGATGGCTTTGGTAGA
AAATGCCTTGCCGTATGCGCTGCGCGTAATGTGCGATGGCGTGATCGAGA
CGATGGGCAAGGCGACGTTCGAGGGTGAGATGAAGAACCCCTTCACCGCG
CACCCGAAGAAGGACCCCGCTACCGGCAAGCTCTACGCATTTGGCTACCA
GGTCAGGCACGCGCAGGTGGAAAAGCCGCCGTACGTGACATTTTACGTCC
TGGATGCCGACGGCAAGCTCGAGCGCCAGGCAAGAGAATCCCAGAGTAAC
ACATTCCCTGTGGACGTGCCACGGGCGATCATGATGCACGACTTCCACAT
CACGGAGAACTACGCCATCTTCATGGATCTCCCTCTACTGTTCAACAAGG
AGCGCGTCTTGTCTGGTGACATGCCATTCGTATTCGATAAGAGTCAGGGA
GCAAGGATGGGCGTGCTACCGCTGGACGCCACGGACGCCTCTGGTATGCg
atGGTTTGACCTGCCCGAGGTGTTCTTCGCGTTTCACGTGCTGAACGCTT
GGGAGGAGCAAGTCGAGGCGAAGAGTTCGGCCGGCGGGGCGGCCCCGGCG
TACCACTCTGCAGTGAAAATAATCACCAGCGACATGTTCGAGCTTGAATT
GGACTCCACCAAGGTTGAACGAGATTTGCCCGACGGCCAACGCACCGACC
CGCATGTGACCACTCTCAACCTGGACACCGGAGAAGCTTTACGGGCGAAG
CTTTCGGCCCAGGCTAATGACTGA
back to top