mRNA_A-nodosum_M_contig969.16.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig969.16.1
Unique NamemRNA_A-nodosum_M_contig969.16.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig969.16.1 vs. uniprot
Match: D8LCN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN7_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 6.420e-13
Identity = 54/142 (38.03%), Postives = 72/142 (50.70%), Query Frame = 3 
Query:  108 AIALVSTMFLHTASAC------SCEAGRGLCDFYEDASVVVRGTVLSRADGSSINDYATYTINSATTYKAEPDVVYAQVISFVTGGNSAACGVTLTIGEEYLFPLFRISN----SFEPEVDGDLSANLCSPPQVWSSVDQTE 503
            A+ L++  F  +A  C       CE  +G+   +   +VV RGT LS++  + IN+  T+T+     Y    DV     ISFVTGGNSA CGV LTIGEEYL  L+   +    S      G L+  LC   +VWS V   E
Sbjct:   16 ALLLLNQAFHASACTCLAQYITPCEYAQGI---FTTTTVVFRGTALSKSAQTDINEDVTFTVQVNAVYSG--DVDGQDEISFVTGGNSAICGVDLTIGEEYLLGLYPAGDDPFDSTGGGTAGQLTVGLCDLARVWSDVPDDE 152
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig969.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCN7_ECTSI6.420e-1338.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig969contigA-nodosum_M_contig969:267948..271457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LCN7
Model size1443
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons4
Evalue2e-15
EggNOG OGs2D2W6@1|root,2SP8K@2759|Eukaryota
Cds size441
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig969.16.1prot_A-nodosum_M_contig969.16.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig969 269116..270971 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870488.676274-UTR-A-nodosum_M_contig969:267947..2688421680870488.676274-UTR-A-nodosum_M_contig969:267947..268842Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig969 267948..268842 -
1680870488.8184187-UTR-A-nodosum_M_contig969:269088..2691151680870488.8184187-UTR-A-nodosum_M_contig969:269088..269115Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig969 269089..269115 -
1680870488.8610978-UTR-A-nodosum_M_contig969:270971..2710081680870488.8610978-UTR-A-nodosum_M_contig969:270971..271008Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig969 270972..271008 -
1680870488.8723454-UTR-A-nodosum_M_contig969:271414..2714571680870488.8723454-UTR-A-nodosum_M_contig969:271414..271457Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig969 271415..271457 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870488.834039-CDS-A-nodosum_M_contig969:269115..2694041680870488.834039-CDS-A-nodosum_M_contig969:269115..269404Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig969 269116..269404 -
1680870488.8502438-CDS-A-nodosum_M_contig969:270819..2709711680870488.8502438-CDS-A-nodosum_M_contig969:270819..270971Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig969 270820..270971 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig969.16.1

>prot_A-nodosum_M_contig969.16.1 ID=prot_A-nodosum_M_contig969.16.1|Name=mRNA_A-nodosum_M_contig969.16.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=147bp
MAFRRLILVAIALVSTMFLHTASACSCEAGRGLCDFYEDASVVVRGTVLS
RADGSSINDYATYTINSATTYKAEPDVVYAQVISFVTGGNSAACGVTLTI
GEEYLFPLFRISNSFEPEVDGDLSANLCSPPQVWSSVDQTELNGCC*
back to top

mRNA from alignment at A-nodosum_M_contig969:267948..271457-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig969.16.1 ID=mRNA_A-nodosum_M_contig969.16.1|Name=mRNA_A-nodosum_M_contig969.16.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3510bp|location=Sequence derived from alignment at A-nodosum_M_contig969:267948..271457- (Ascophyllum nodosum dioecious)
CCAGCTTGACAATTTTCAAGAAACTGGTCGAGTAGCACGAGAGGTGAGTT
AGAGCTCGTAGTCTATTATAGTCAAATGCAGAGTACAACACAAAGAAGTG
TCTGCGATTCTTCGAGCGTGGTAGGTAATGACTGTTCAACGGTCTGGTGG
GGGAAACATTATGGGTTTTTAATCTCATCCGATAACCGCCCCGAGACATG
ACACGTGTTGTTTTCTGTTCCCAGATTCTGCATGAATGTTTCGTCGTCTG
TCGTACGTACTGCTATAATACCCCGGCCGGTAGTGTTCTGCACGGCAGCG
GTAAGCGACGGAGAGCAAAACCACAAGACCTCAATATTTTACTTGAGTGA
ATTTGCGGAAAGCGCACTGATACTGACAAGATACCTTACCCTCCCCCACC
CCCCCCTTGTGTTTGAAATGATATCTTTCATTCCGTCGGCTTCGTGCAGG
CGCTTCCATTCTCCACAACACCAGCAGTAACCGACCATGGCATTCCGAAG
GCTGATCCTTGTAGCTATCGCCCTCGTCTCAACTATGTTCCTCCACACGG
CTAGCGCTTGTTCGTGCGAGGCTGGTAGAGGGCTATGTGACTTCTACGAA
GATGCCTCCGTCGTGGTGCGAGGCACCGTACTCTCCCGGTATGTCGATCG
CATTTCTTTGTAATCTGTATAAATACCTCAGCAACGGTAATCGGTAACCG
TATGTGCGGGCATTTTGCTACAGAGCTGCATCAAGCTCTCGCCCGTTGAC
GAGACTGCGGACTCAGTCGTTCAACTCTCTATCGCAATAATATACCCATA
ATAGCTCATAGATAGCATGTCGGTCGAGAGGAAGAAAAACGTGTAAAATA
TAAGGTTCATAGAGACGGTCAAAGCAGCTGCGTCGAACGCACGCATATCC
TGTGCTTTGAAAACGATGGTTAACCAGCTTGGCCCACCACGAATTTCTGA
CGCACGCACATTTTCCCTTCACTTCAGACCGGCTAGAGTTACTGTCACAG
GTGTAATGACGTTTTTTTTTCTGAGGAATCCACGCCATGCTCATTTTGTC
GGTCCCCACAAAACGCACACATAGCCCAACATTACTCCACTTAAAGAGGT
AAAATATAGGTCTCTGGAGGAACAAAAGCAGATGGTACTGTTGCAGATAT
CGTGTACTGTATATACTGTTGTAGCGCCGGTGATATTTCGAGAGTTTGTC
AACCAGGTGTTTGATATAATAGGGCCTCTAACCATTCTAGCCAAGTCAGT
TTTTGGAGTCAGTAAACCACAACATTTCCCTTGCCGGGCTGTGCTTGTGT
TCATCTACCAACGATGACCCTAGAGTAAAACCTCCACATACGTTGGTGTC
TGCCGTTCGCGCCGGGTGTTAAAAAGCGATATTTTGTTCCCAATGTGGTC
TCTGGAGGACAGCACCTGATTTTGCCGCCGCGCCGTTCGCGCCGGGTGTT
AAAAAAGCGATGGTGGCCAGGATTTTGCTTGACGTGACACACTTGAACTT
GCGGAGCAACAAAATAATCCGCCGTCCCTCAAAGATCTAGGCACAAAAAT
AAAGCCCGTAAGATTCGTCAGGAAGCCTCTCCTTGCCTGCCTTGTGGCAG
CTCAAACGCCGTGCACGCACCTAATATAAGCCCTCTTATCCCCTTGAACT
CGCCAATACAGCTATATTTCTCTATGTAAAGATATCATAGACTCAGCGCC
CTCCCCCTTCCGCCCGTCCTTCTCGACGGGTAATAGGGAAAAAGGCTAAC
AAAGATTTCCGATCTCCCGTCGCTTGGCAAGAACTTGAATGGGCCTGTGT
GGTTTGTGTTCGGTCAGATCCACCCAGAGCTCGCAGTCCCACAGACTCAA
GCCAAGAACACGCGTCTTATACTAGCGAATGGCATACTTTGTGGCTGACG
ACCCCTGCGATCCTGAACATCTAAAATCTCGAGGCCTCTCTCTAAAATTG
ACCCTCGCCATGCAATGTTACCTCGTTTGGGTCATATTTTCTGCGACCAC
CGTGTAGACGGCTGAACTGGATTTCCTCGTTCCGCGATTGCTCTACACAA
CAGGGCGGACGGCTCGAGCATCAACGACTACGCCACTTACACTATCAACA
GCGCCACTACGTACAAGGCTGAGCCAGATGTCGTCTACGCGCAGGTCATC
AGCTTCGTCACCGGCGGAAACAGCGCCGCCTGCGGGGTGACACTTACCAT
CGGCGAGGAATATCTTTTCCCTCTGTTCCGCATTTCAAACTCGTTCGAGC
CAGAAGTTGATGGCGACCTCTCGGCGAATCTGTGCTCACCCCCTCAAGTT
TGGTCCTCTGTCGACCAGACGGAACTGAACGGTTGTTGCTAGGTCCGCCC
TTAAGGAGACGGATTCAAGGTGAGGACCTCCACCCGAAAAGTAGGTACAA
CCGCGTGGCGCCCAATATTAAGAATGATCCTTGGCTTTTTTCACTGTTTG
CGCTGATCTGTGGGGCGTGGGGGCCCAGGACGGAAGCGCCGAGAAGTGTG
AAATGGAGTTTGCAGTGGGAAACGCGCCCCTAGGAGTTGCCTGAGATGAG
TTCCACTACTAATCCAAGCAGCTCACCCAAACGCGTTTCTTTCGCATTCG
TTCTCACACGCGCAGGTCGGAAAACAGGGAAATTGTCGCCCCTGTCGTTG
CCGCCAACGAACACTCAAAAACTGACCCGGGATACATTCGACGAGATAAT
ATATGATATCAGGACACCACCGTTGTCGCTGTTACTGTAGACCACGGCAG
ACGCGTGCGAACGATCAACGATTACCTACCGTGATCCCGTGTATAATACT
GAAGTTCGTGGAGGGTTGGACGCGTTTCCAAGGTCAATGCATCAACATTT
CGTCGTCGGATCTTCGACGCCAGGTGTTCGCGATCGCTTCCGTAACGGCT
ATAATATGTAAAGGGCACGCAGAGTAGGCATCGTCAAACGCAGAGTTCAC
ATAATAAAACGTCGGAAGTCGTTCATGTAGTAGGCGATTGAAGCCGAGAT
ACCCATCACTTCAAAAATCCTCCAGGAGCAGACGAGTATCTTTGCTTTAA
GTACGGTCTTCAAGATTGAACAGGGGAGGTAACAAATTCGTCAAGTACGG
GGGGGTCAAGTAGTTAAGGAGACAGGCAGGAGACTACCATTCGTGTTTGG
AGGCAATGTGATAGAGCGCTGCAGTTGCACGTCAGCCGGGGGTACGACCG
CCTTCGCGCTTGGTAGGGGGGCAAGAATTCCAACGTGTGGGGGGTATCCT
TTCCAGCTGAAGGAATATATTGCATTGTTAATGACCGATTGCGCAAACTA
CTTGTAGTATGGGTCCTGCGTGAAAACGAAGACGTCCTTCGAGGTGATTA
TCTCTCTTGATTCGTAGGCATTCGTATGGTTCGGAAGATGGATCTTGCGG
GCGCTAGGTTCTTGGCGCAAGCTCGACGTCTGAGCAGGCTGTTGCAGCGA
GTGTGGGTACGGGATATCCGAGTTGTATAATGTAATTTCCAAATTGGAGT
AACATTCGGT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig969:267948..271457-

>mRNA_A-nodosum_M_contig969.16.1 ID=mRNA_A-nodosum_M_contig969.16.1|Name=mRNA_A-nodosum_M_contig969.16.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=441bp|location=Sequence derived from alignment at A-nodosum_M_contig969:267948..271457- (Ascophyllum nodosum dioecious)
ATGGCATTCCGAAGGCTGATCCTTGTAGCTATCGCCCTCGTCTCAACTAT
GTTCCTCCACACGGCTAGCGCTTGTTCGTGCGAGGCTGGTAGAGGGCTAT
GTGACTTCTACGAAGATGCCTCCGTCGTGGTGCGAGGCACCGTACTCTCC
CGGGCGGACGGCTCGAGCATCAACGACTACGCCACTTACACTATCAACAG
CGCCACTACGTACAAGGCTGAGCCAGATGTCGTCTACGCGCAGGTCATCA
GCTTCGTCACCGGCGGAAACAGCGCCGCCTGCGGGGTGACACTTACCATC
GGCGAGGAATATCTTTTCCCTCTGTTCCGCATTTCAAACTCGTTCGAGCC
AGAAGTTGATGGCGACCTCTCGGCGAATCTGTGCTCACCCCCTCAAGTTT
GGTCCTCTGTCGACCAGACGGAACTGAACGGTTGTTGCTAG
back to top