mRNA_A-nodosum_M_contig967.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig967.2.1
Unique NamemRNA_A-nodosum_M_contig967.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig967.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig967contigA-nodosum_M_contig967:14985..15277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size261
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size132
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870482.9598339-UTR-A-nodosum_M_contig967:14984..150511680870482.9598339-UTR-A-nodosum_M_contig967:14984..15051Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig967 14985..15051 -
1680870482.9952033-UTR-A-nodosum_M_contig967:15215..152771680870482.9952033-UTR-A-nodosum_M_contig967:15215..15277Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig967 15216..15277 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870482.9725637-CDS-A-nodosum_M_contig967:15051..150581680870482.9725637-CDS-A-nodosum_M_contig967:15051..15058Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig967 15052..15058 -
1680870482.9833007-CDS-A-nodosum_M_contig967:15090..152151680870482.9833007-CDS-A-nodosum_M_contig967:15090..15215Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig967 15091..15215 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig967.2.1prot_A-nodosum_M_contig967.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig967 15052..15215 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig967.2.1

>prot_A-nodosum_M_contig967.2.1 ID=prot_A-nodosum_M_contig967.2.1|Name=mRNA_A-nodosum_M_contig967.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=44bp
MCQVLFRSTNCPGRLSFMFTVVPFSMFSTEKSVRHSDIVCAMG*
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mRNA from alignment at A-nodosum_M_contig967:14985..15277-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig967.2.1 ID=mRNA_A-nodosum_M_contig967.2.1|Name=mRNA_A-nodosum_M_contig967.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=293bp|location=Sequence derived from alignment at A-nodosum_M_contig967:14985..15277- (Ascophyllum nodosum dioecious)
GAGGGTTCGCAGAATCGGTCTAGTAGGCTACATGGAACCCAGAGGTATGA
GGAGTAAGCGACATGTGTCAAGTCCTCTTCCGGTCGACCAACTGCCCAGG
ACGGTTGTCTTTTATGTTTACAGTAGTTCCGTTCAGTATGTTTAGTACAG
AAAAGTCCGTTCGACATAGCGACATAGTCTGCGCTATCTTGCAAAAGTGG
ACAAGGTTCTCATCGCGACGGGGTGATCCGCAACACGACTAGATTGGAAC
CTAGAGTTATAAGGAGTGGACTCAATGTGTCAAGTTGTCTTCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig967:14985..15277-

>mRNA_A-nodosum_M_contig967.2.1 ID=mRNA_A-nodosum_M_contig967.2.1|Name=mRNA_A-nodosum_M_contig967.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=132bp|location=Sequence derived from alignment at A-nodosum_M_contig967:14985..15277- (Ascophyllum nodosum dioecious)
ATGTGTCAAGTCCTCTTCCGGTCGACCAACTGCCCAGGACGGTTGTCTTT
TATGTTTACAGTAGTTCCGTTCAGTATGTTTAGTACAGAAAAGTCCGTTC
GACATAGCGACATAGTCTGCGCTATGGGGTGA
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