mRNA_A-nodosum_M_contig966.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig966.3.1
Unique NamemRNA_A-nodosum_M_contig966.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig966.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig966contigA-nodosum_M_contig966:98591..103261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size264
Hectar predicted targeting categoryother localisation
Exons4
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870482.5570922-CDS-A-nodosum_M_contig966:98592..986391680870482.5570922-CDS-A-nodosum_M_contig966:98592..98639Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig966 98593..98639 -
1680870482.5677335-CDS-A-nodosum_M_contig966:100626..1006981680870482.5677335-CDS-A-nodosum_M_contig966:100626..100698Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig966 100627..100698 -
1680870482.5780418-CDS-A-nodosum_M_contig966:101152..1012241680870482.5780418-CDS-A-nodosum_M_contig966:101152..101224Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig966 101153..101224 -
1680870482.588297-CDS-A-nodosum_M_contig966:103191..1032611680870482.588297-CDS-A-nodosum_M_contig966:103191..103261Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig966 103192..103261 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig966.3.1prot_A-nodosum_M_contig966.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig966 98593..103261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig966.3.1

>prot_A-nodosum_M_contig966.3.1 ID=prot_A-nodosum_M_contig966.3.1|Name=mRNA_A-nodosum_M_contig966.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=87bp
PIPRELGNPTALQHIFLSGNKLTGSIPSELGNLTALQKLILHDNELTGSI
PRELGRMTVLDSLKLYRNELTGPLPRELGNLNALQHL
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mRNA from alignment at A-nodosum_M_contig966:98591..103261-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig966.3.1 ID=mRNA_A-nodosum_M_contig966.3.1|Name=mRNA_A-nodosum_M_contig966.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4671bp|location=Sequence derived from alignment at A-nodosum_M_contig966:98591..103261- (Ascophyllum nodosum dioecious)
CCGATACCGAGGGAACTGGGAAACCCGACAGCTTTGCAGCATATATTCCT
TTCCGGCAACAAATTGACCGGTGAGACTTATGTATGTTGCGGTATACATC
TGGATGTTTATCGTGATGTACGTCATTCAATTGGCTGGGTGGTCCATGAT
GACAGAATGAAGAATAATATCGAATGTCCGGTTTTTCTTACAAGCTACAT
TCGTCGAACCCTTATTTCTTTCTTATGATATTCTTGTAAACGTAGTGATA
AACGCTCCCCACACCCCCCGCCCGAATCTGGAAATGCTGTCTTAAAAGCC
TCTAGATATGCGGACAGCCATTGCTATCGAATTTATCGTGGCTTTGAAAG
AGAGTCAAGAGAGTTTTAACGGGAAAATAATATATTTTCCCTCATCATGG
GGTCGAGTTGTTTCGGCCAGCGAATTTGCTTTTAATCGCAACCACACAGT
AACAATGTATGTTCACCCGTCGGGCCGCCGGCAGCTTGAAGAGGAATGAA
CAAAGTTTTAGATACTCGACAAAATATGTACACTCAAGGAAACTATTACA
CAAGTGTAAGGTTTAATGTGACGCTTCTCCTTGCGCTGAGTCGATACCGG
GCGCGTTTAGATCGCAATTTTTCCTAAATGTGTTTCATCGGATCACCTAC
AAGCTGACTTGATACGGTAAACTTATTTAGTCTCGGTGTGTCCTTCGGAA
GCATGAATCGTGATGGTTACAGTAGCGCCAAAGCACTTTCGGAGGCCCAT
AACATTGCAAAACGTTCTATGAGAAGCGCTGGAGGTGTTGATTTTGTTTT
ATCGACGCTTTCCGTGGAACGCGGTTCATATCCAGTGTTTTTAGTCGTTA
TTTAACTCTATGTAAATTTTTTTGGGAGTCCCCGTCTTTTCCTTGGTCAT
GGAGTTTCCTACTTAAGTCCCAAAAGGAAAACCCTTACGGCAGGTGTGTT
CTGCTGTAGGTATGCAACGTGGGTGGACATGTTGGCCGAACAGCATGAAA
CGACGAAAGCATGGATTGCAATTGCGAGAGAAATTCGCCTACACGCTATG
CTTGGTGCGTGTGCCACGGTTCTTACTCCTCTCAAAATACTACTCCCACC
TAGTTCCCACTGATGGCCATGCCGATTTAACATTTCTGTGAATGTCAGAG
CGGGGTCCTATTTGGCCCTAACAGATTCCACTAGACGAGAAACACTCAAG
TATCTGCACGACACTACTTTACAGTATCGTAGCGATTTTGGGTCTCGTAC
GGTTGATAGAAATACGGTTGATAGAAATAATAGTCGTGGCATGAAAAAAA
GGAGTCGTCCCGGTCGTTACATCTCGAAGGGACATTCCTGAAGAGCTGGA
TTAAGTTCAGGCTGCTCCATGCTTGGAAAGTATACAGCTTATAAGTAAAA
TATTTTCATGCAAGAAACAATAGAACAGATAACGTGACCATCTGTATTAA
TGTTATAATTAGGGATCATGACATCGTGAAAATCCTGCTATAGCTTCTCT
CGAATAACACTCTTGGAAAAGAATAACAATAACAGAGTGTCAGAGGGAGG
ACTACCTCGTGTCGGGGATGTACTCTGTGTCAACGCTTTGATTGGTGTGT
AGCATTTTTTTATGAGGCACCTAGTAAGGTACAGGCTACGGATGCCCTCG
ACCGTTGGGAGACTTATGCTTTGACGAAGAGGGGTCACCAAACGGGTGTT
CCAATATCTTAAATAGCCGTATTTTTCAGCATGCGGTGGAATTGGAGCGA
TAGCGATCTCGTGTAGAATTCGATTTCCAGACTGTACATAGATAACATAA
ATCTTCACGATGGAAAGGCGACAATATTACTTTGAAAAATGGAGAGAATG
ACCCGCCCCGGTGACGTGAGCACGGTCTTCTCGACTTTTTCTAAAGTAGA
TTTTGCATGGTAGCCTAAGGTTGTTATCACCTGTCTCGTTGGCAAGTAGG
GCACTGACATCGAATCGCCAGTACAAGAGCATTCACGGGTGAAGTAAGGA
CAGTAAGATCGTCTTTTTGGCGTCACTCTACGCACAGGGTCGATACCGAG
CGAACTGGGAAACCTGACAGCTCTACAAAAGCTAATCCTTCACGACAACG
AACTGACCGGTGAGACTTATGTATGTTGCGGTATATTTCTGGATGTTTAT
CGTGATGTACGTCATTCAATTGGCTGCGTGATCCATGGTGACAGAATCGC
ATCAAGAATAATATTGAATGTATGGGGGGGGTTTCTTACAAGTTACATTC
GTCGAATCCTCATTTCTTTCTTAGAACATTCCATATCGCTTCCATAGCGC
ACAAGATTTAAAAAAACGGATATAATATATATATATATATATATATATAT
ATATATATATTCATTATACTTCAGTTGCGGCTTACCATTGAATTATGCAT
ATATGCTCCCCGGGTCATTCAGAAGAACAGATAGCGTCGTAATCTAGGTT
AGTACCGATTACCACGTAGCTCAACGAAAACATGTTTATTAATGTTTCGA
TTGAGAATCATCGCGTCGTGAAAATCCTGCTGTTCCGTCTTTCGGACGCC
ACTTTTTCCGTAGGATCGATACCGCGTGAGCTCGGAAGAATGACCGTCTT
GGATTCTCTAAAACTATATCGGAATGAACTGACCGGTGAGGCTTTCACGT
GTGGAGATGCATCCGTGATAGATTTAATCGTGGATAATGCCCGTGTGACG
GTGGGATTTGTCCATTAATAGTGGGTAAATAAATGAGGATCGTATCCAGA
ACTCTAGTTTTTTAGTTCCTTGGGACGATATTCGACGAACGGAACCATAT
CCTGTCAGGCGAAAACGTTTGGCATCGATAGTCTTGTAACCGTAGTGATA
AACGCTCCCCCATCCCCCGCCCGAATCTGGAAATGCTGTCTTCAAAACCT
CTAGATATGCCGCCAGACATTTTTATCGAATTTATCGTGGCTTTGAAAGG
GAATCAAGAGAGTTTTGACGGGAAAATAGTATATTTTCCCTCATGGGGTC
GAGTTGTTTCGGCCAGCGAATTTGCTTTTAATCGTAACTACACAGTGCCA
ATGTATGTTCACCCGTCGGGCCGCCGGCAACTTCAAGAGGAATGCACAAA
GCTTTAGACCCTCGACGTAATCTGTACACCCAAGGGAAAAACAATACAAG
TGTGAGATTTTATGTGACGCTTCTCCTTGCGCTGAGTCGATACCGGGCGC
GTTTAGATTGCAAATTGTCCTAAATGTCTTTCGTCGGATCACCTACAAGC
TGACTTGATACTGTAAACTTATTTGGTCTCGGTGTGTCCTTCGGAAGCAT
GAATCGTCATGGTTACAGTAGCGCCAAGGCGCTTTAGGAGGTCTAAAGCG
TTGCAAAACGTGCTATGAGAGGCCCTGGAAGTGTTGGTTTTGTTTTATCG
ACGCTTTCCGTGGAACGCGGTTCATAACCAGTTTTCTTAGTCTTCTTTAC
TCTATGTAAACGTATTTGGGAGTCCCTGATTTTTCCTCGGTCGTGAAGTT
TCCTCCTTAAGTCCCAAAAGGAAAACCCTTACGGCTCAGGTGTGTTCTTC
TGTAGGTATGCAACGTGGGTGGACATGCTGGCCGAACAGCATGAGACGAC
GAAAGCATGGATTGCAATTCCGAGAGAAATTCGCCTACACACTATGCTTG
GTGCGTGTGCCACGGTTCTTATTGTTCTCAAAATAGTAGTCCCACCTAGT
TCCCACTGATGGCCACGCCGATTTAACATTTCTGCGAATGTCAGAGCGGG
GTCCTATTTGGCCCTAACAGATTCCGCTAGGCGAGGAACACTGAAGTATC
TGCACCACACTACTTAACAGTATCGTAGCAGTTTTGGGTCTCATACGGTT
GATAGAAACATTTGTGGCATGAAAAAAAAGAGTCGTCCCCGTCGTCACAC
CTCGAAGGGACATTCCTGAAGAGCTGGGTATTTTCAGGCTGCTCCATGCT
TGGAAAGTATACAGCTTATAGGTAAAGTATTTTAATGCAAGAAACAAAAG
GACAGAGGACGTGACCTTCTGTATAAATGTTACAATTAAGGATTATGGCA
TCGTGAATATTCTGCTATTCCTTCTCTCGAACACCACTCTTGGTAAAGGA
TCATAGTAACAATAACAGAGTGTCGGAGGGAGGAATACCTCGTGTCGTGG
ATGTACTCTGTGTCAACGCTTTGAGTGGTGTAGCATTTTTTTATAGGGCA
CCTAGTAAGGTACATACCACGGATGCCCTCGAACGTTGGGAGACTTATCC
TTTGACGGAGAGAGGTCACCAAACGGGTGTTCCAATCTCTTAAATAGCCG
TATGCCTCAGCATGCGGTGGAATTGGAGCGATAGCGATCTCGTGTAGAAC
TTCGATCTTCCGACTATACATAGATAATATAAATCTTCACGATCAAAAGG
CGGCAATATTACTTTGAAAAAAAATGGAGAGAACGACCCGCCATGGTGAC
GTGAGCACGGTTTTCTCGACTTCTTCTGAAGTAGATTTCGCATCGTACCC
TAAGGTCATTATCACCTGCCTCGTTGACAAATAGAGCACTGACATCAAAT
CCACAGTACATGGGCATTCTCGAGTGAAGTAAAGACAGTAAGTTCGTCTT
TTTGGCGTCACTCTACGCACAGGGCCGCTACCGAGGGAACTGGGAAACCT
TAATGCTCTGCAACATCTAGT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig966:98591..103261-

>mRNA_A-nodosum_M_contig966.3.1 ID=mRNA_A-nodosum_M_contig966.3.1|Name=mRNA_A-nodosum_M_contig966.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=261bp|location=Sequence derived from alignment at A-nodosum_M_contig966:98591..103261- (Ascophyllum nodosum dioecious)
CCGATACCGAGGGAACTGGGAAACCCGACAGCTTTGCAGCATATATTCCT
TTCCGGCAACAAATTGACCGGGTCGATACCGAGCGAACTGGGAAACCTGA
CAGCTCTACAAAAGCTAATCCTTCACGACAACGAACTGACCGGATCGATA
CCGCGTGAGCTCGGAAGAATGACCGTCTTGGATTCTCTAAAACTATATCG
GAATGAACTGACCGGGCCGCTACCGAGGGAACTGGGAAACCTTAATGCTC
TGCAACATCTA
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